1905:
1248:
426:; tYNA, which helps analyze molecular networks; PubNet, which analyzes publication networks; PeakSeq, which identifies regions in the genome bound by particular transcription factors; and CNVnator, which categorizes block variants in the genome. Gerstein has also written extensively on how general issues in data science impact on genomics—in particular, in relation to privacy and to structuring scientific communication.
815:; Altshuler, R. M.; Auton, G. A. R.; Brooks, D. R.; Durbin, A.; Gibbs, A. G.; Hurles, F. S.; McVean, F. M.; Donnelly, P.; Egholm, M.; Flicek, P.; Gabriel, S. B.; Gibbs, R. A.; Knoppers, B. M.; Lander, E. S.; Lehrach, H.; Mardis, E. R.; McVean, G. A.; Nickerson, D. A.; Peltonen, L.; Schafer, A. J.; Sherry, S. T.; Wang, J.; Wilson, R. K.; Gibbs, R. A.; Deiros, D.; Metzker, M.; Muzny, D.; et al. (2010).
1840:
1275:
Giaever, G.; Chu, A. M.; Ni, L.; Connelly, C.; Riles, L.; Véronneau, S.; Dow, S.; Lucau-Danila, A.; Anderson, K.; André, B.; Arkin, A. P.; Astromoff, A.; El-Bakkoury, M.; Bangham, R.; Benito, R.; Brachat, S.; Campanaro, S.; Curtiss, M.; Davis, K.; Deutschbauer, A.; Entian, K. D.; Flaherty, P.; Foury,
1607:
Landt, S. G.; Marinov, G. K.; Kundaje, A.; Kheradpour, P.; Pauli, F.; Batzoglou, S.; Bernstein, B. E.; Bickel, P.; Brown, J. B.; Cayting, P.; Chen, Y.; Desalvo, G.; Epstein, C.; Fisher-Aylor, K. I.; Euskirchen, G.; Gerstein, M.; Gertz, J.; Hartemink, A. J.; Hoffman, M. M.; Iyer, V. R.; Jung, Y. L.;
2712:
2722:
415:, building tools in support of genome technologies (such as next-generation sequencing), analyzing molecular networks, and simulating macromolecular motions. Notable databases and tools that the group has developed include the
2707:
1949:
89:
1769:
Li, Mingfeng; Santpere, Gabriel; Kawasawa, Yuka
Imamura; Evgrafov, Oleg V.; Gulden, Forrest O.; Pochareddy, Sirisha; Sunkin, Susan M.; Li, Zhen; Shin, Yurae; Zhu, Ying; Sousa, André M. M. (2018-12-14).
436:
and non-scientific publications in more popular forums. His work has been highly cited, with an H greater than 100. He serves on a number of editorial and advisory boards, including those of
1468:
481:
1276:
F.; Garfinkel, D. J.; Gerstein, M.; Gotte, D.; GĂĽldener, U.; Hegemann, J. H.; Hempel, S.; Herman, Z. (2002). "Functional profiling of the
Saccharomyces cerevisiae genome".
407:, including data mining and machine learning, molecular simulation, and database design. His research group has a number of foci including annotating the human genome,
1945:
568:
564:
525:
106:
2717:
1514:
2677:
501:
671:
The database of macromolecular motions : a standardized system for analyzing and visualizing macromolecular motions in a database framework
1932:
924:
2692:
2682:
149:
1084:"CNVnator: An approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing"
416:
1910:
1029:
Rozowsky, J; Euskirchen, G; Auerbach, R. K.; Zhang, Z. D.; Gibson, T; Bjornson, R; Carriero, N; Snyder, M; Gerstein, M. B. (2009).
2702:
2687:
2183:
372:
764:
1712:
Gerstein MB, Lu ZJ, Van
Nostrand EL, Cheng C, Arshinoff BI, Liu T, Yip KY, Robilotto R, Rechtsteiner A, et al. (2010).
2234:
1608:
Karmakar, S.; Kellis, M.; Kharchenko, P. V.; Li, Q.; Liu, T.; Liu, X. S.; Ma, L.; Milosavljevic, A.; Myers, R. M. (2012).
654:
388:
213:
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572:
334:
2494:
2407:
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1327:
497:
1663:"A statistical framework for modeling gene expression using chromatin features and application to modENCODE datasets"
1346:
2656:
2631:
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2417:
438:
939:"The tYNA platform for comparative interactomics: A web tool for managing, comparing and mining multiple networks"
547:
456:
2606:
1925:
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2351:
2024:
412:
613:(1991). "Analysis of protein loop closure. Two types of hinges produce one motion in lactate dehydrogenase".
2570:
1543:
380:
364:
144:
72:
2651:
2697:
2412:
2086:
1552:"Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project"
2641:
1918:
469:
460:. He has been quoted in the New York Times, including on the front page, and in other major newspapers.
423:
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292:
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2224:
1890:
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1309:
489:
433:
299:
139:
66:
1849:
743:
1772:"Integrative functional genomic analysis of human brain development and neuropsychiatric risks"
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1629:
1621:
1579:
1571:
1550:; GuigĂł R; Gingeras TR; Margulies EH; Weng Z; Snyder M; Dermitzakis ET; et al. (2007).
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622:
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175:
504:
Postdoctoral
Fellowship. He is a contributor to a number of scientific consortia including
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2014:
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626:
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493:
368:
195:
100:
1714:"Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project"
1500:
1133:"Genomics and privacy: Implications of the new reality of closed data for the field"
955:
938:
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2514:
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2479:
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2331:
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2019:
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2009:
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430:
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2101:
318:
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712:
403:. This involves applying a range of computational approaches to problems in
17:
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858:
1657:
Cheng, C.; Yan, K. K.; Yip, K. Y.; Rozowsky, J.; Alexander, R.; Shou, C.;
1625:
1099:
730:
634:
472:
Distinguished Young
Scholars award, Gerstein has received awards from the
1610:"ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia"
1575:
1297:
1035:
enables systematic scoring of ChIP-seq experiments relative to controls"
840:
2565:
980:"PubNet: A flexible system for visualizing literature derived networks"
473:
356:
345:
1515:"Donaghue Foundation selects five investigators for long-term support"
1050:
747:
505:
169:
1216:
1191:
889:
2723:
Yale
Department of Molecular Biophysics & Biochemistry faculty
2713:
Fellows of the
American Association for the Advancement of Science
817:"A map of human genome variation from population-scale sequencing"
1899:
1242:
1914:
1895:
1444:"Scientists Unveil New Blueprint Of How The Human Genome Works"
1238:
937:
Yip, K. Y.; Yu, H; Kim, P. M.; Schultz, M; Gerstein, M (2006).
2708:
477:
1863:
242:
1131:
Greenbaum, D; Sboner, A; Mu, X. J.; Gerstein, M (2011).
1082:
Abyzov, A; Urban, A. E.; Snyder, M; Gerstein, M (2011).
978:
Douglas, S. M.; Montelione, G. T.; Gerstein, M. (2005).
485:
794:
Protein recognition: surfaces and conformational change
517:
176:
Protein recognition: surfaces and conformational change
925:
Bits of
Mystery DNA, Far From Junk, Play Crucial Role
379:
in proteins, graduating in 1993. He then went on to
1192:"Structured digital abstract makes text mining easy"
482:
Pharmaceutical
Research and Manufacturers of America
2599:
2528:
2457:
2426:
2375:
2324:
2248:
2197:
2161:
2120:
2074:
2043:
2002:
1956:
874:"RNA-Seq: A revolutionary tool for transcriptomics"
234:
220:
209:
186:
168:
132:
122:
82:
59:
51:
39:
32:
521:
1469:"Keck Helps Five Careers With $ 1 Million Grants"
765:"Yale establishes biomedical data science center"
333:. In 2018, Gerstein was named co-director of the
1328:"List of Non-technical Writing by Mark Gerstein"
1946:International Society for Computational Biology
919:
917:
586:
584:
582:
569:International Society for Computational Biology
526:International Society for Computational Biology
387:from 1993 to 1996 supervised by Nobel-laureate
1190:Gerstein, M; Seringhaus, M; Fields, S (2007).
1926:
559:
557:
359:in 1989, Gerstein did a PhD co-supervised by
8:
496:Scholarship supporting his doctoral work at
872:Wang, Z.; Gerstein, M.; Snyder, M. (2009).
1933:
1919:
1911:
1903:
1891:Mark Gerstein publications on ResearchGate
1246:
690:
688:
664:
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644:
29:
1811:
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1633:
1583:
1215:
1166:
1156:
1107:
1058:
1005:
995:
954:
897:
848:
720:
548:"Yale Scientists Awarded AAAS Fellowship"
335:Yale Center for Biomedical Data Science.
288:. As of 2009, he is co-director of the
536:
502:Damon Runyon Cancer Research Foundation
399:Gerstein does research in the field of
797:(PhD thesis). University of Cambridge.
697:"A database of macromolecular motions"
542:
540:
429:Gerstein's work has been published in
2718:Alumni of Emmanuel College, Cambridge
565:"Meet the ISCB Fellows Class of 2015"
7:
280:is an American scientist working in
1380:"Tiny, Vast Windows Into Human DNA"
150:MRC Laboratory of Molecular Biology
417:Database of Macromolecular Motions
25:
1347:"Poking Holes in Genetic Privacy"
1330:. gersteinlab.org. Archived from
2678:21st-century American biologists
1838:
763:Xiong, Amy (February 9, 2018).
744:Mark B. Gerstein's publications
673:(PhD thesis). Yale University.
373:Laboratory of Molecular Biology
1467:Mervis, Jeffrey (1999-07-16).
923:Gina Kolata, (Sept. 5, 2012) '
695:Gerstein, M; Krebs, W (1998).
524:. He was made a Fellow of the
1:
1485:10.1126/science.285.5426.312b
956:10.1093/bioinformatics/btl488
655:Mathematics Genealogy Project
1158:10.1371/journal.pcbi.1002278
627:10.1016/0022-2836(91)90387-L
615:Journal of Molecular Biology
295:and Bioinformatics program.
210:Other academic advisors
1538:ENCODE Project Consortium;
1378:Zimmer, Carl (2014-09-01).
1345:Kolata, Gina (2013-06-16).
498:Emmanuel College, Cambridge
97:Distinguished Young Scholar
2739:
2693:Stanford University alumni
2683:American bioinformaticians
1878:at Yale School of Medicine
1137:PLOS Computational Biology
439:PLoS Computational Biology
669:Krebs, Werner G. (2002).
492:. Other awards include a
457:Molecular Systems Biology
230:
115:
27:American bioinformatician
1884:publications indexed by
1872:at Yale Computer Science
1864:Mark Gerstein Laboratory
1680:10.1186/gb-2011-12-2-r15
1262:publications indexed by
750:bibliographic database.
593:publications indexed by
2703:Yale University faculty
1796:10.1126/science.aat7615
1738:10.1126/science.1196914
997:10.1186/gb-2005-6-9-r80
878:Nature Reviews Genetics
752:(subscription required)
365:University of Cambridge
145:University of Cambridge
73:University of Cambridge
2688:Harvard College alumni
713:10.1093/nar/26.18.4280
701:Nucleic Acids Research
344:After graduating from
307:Biomedical Informatics
1851:Mark Bender Gerstein
1626:10.1101/gr.136184.111
1544:Stamatoyannopoulos JA
1100:10.1101/gr.114876.110
470:W. M. Keck Foundation
424:conformational change
383:in bioinformatics at
381:postdoctoral research
377:conformational change
293:Computational Biology
95:W. M. Keck Foundation
1902:Bibliography Server
1245:Bibliography Server
1039:Nature Biotechnology
514:1000 Genomes Project
419:, which categorizes
311:Molecular Biophysics
278:Mark Bender Gerstein
44:Mark Bender Gerstein
2591:Gustavo Stolovitzky
2215:Julio Collado-Vides
1788:2018Sci...362.7615L
1730:2010Sci...330.1775G
1724:(6012): 1775–1787.
1576:10.1038/nature05874
1568:2007Natur.447..799B
1412:"Thoughts on Genes"
1298:10.1038/nature00935
1290:2002Natur.418..387G
1208:2007Natur.447..142G
1149:2011PLSCB...7E2278G
841:10.1038/nature09534
833:2010Natur.467.1061T
827:(7319): 1061–1073.
486:Donaghue Foundation
434:scientific journals
385:Stanford University
325:, and Professor of
155:Stanford University
2657:Reinhard Schneider
2449:Marie-France Sagot
2444:Xiaole Shirley Liu
1848:has a profile for
1782:(6420): eaat7615.
1416:The New York Times
1384:The New York Times
1351:The New York Times
1264:Microsoft Academic
490:Fellow of the AAAS
300:Albert L. Williams
140:Harvard University
67:Harvard University
2665:
2664:
2571:NĂşria LĂłpez Bigas
2505:Katherine Pollard
2465:Serafim Batzoglou
2388:Terry Gaasterland
2112:Gunnar von Heijne
2051:Michael Ashburner
1854:
1562:(7146): 799–816.
1519:medicine.yale.edu
1284:(6896): 387–391.
769:yaledailynews.com
468:In addition to a
464:Awards and honors
409:personal genomics
405:molecular biology
298:Mark Gerstein is
275:
274:
221:Doctoral students
117:Scientific career
16:(Redirected from
2730:
2622:Takashi Gojobori
2581:Teresa Przytycka
2561:Christina Leslie
2383:Patricia Babbitt
2362:Olga Troyanskaya
2286:Christine Orengo
2184:Robert Gentleman
2035:Alfonso Valencia
1994:Michael Waterman
1950:year of election
1935:
1928:
1921:
1912:
1907:
1852:
1842:
1841:
1826:
1825:
1815:
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1760:
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1749:
1709:
1703:
1702:
1692:
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1647:
1637:
1620:(9): 1813–1831.
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1511:
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1368:
1366:
1365:
1342:
1336:
1335:
1324:
1318:
1317:
1272:
1266:
1260:Mark B. Gerstein
1257:
1251:
1250:
1236:
1230:
1229:
1219:
1187:
1181:
1180:
1170:
1160:
1143:(12): e1002278.
1128:
1122:
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1111:
1079:
1073:
1072:
1062:
1051:10.1038/nbt.1518
1026:
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753:
741:
735:
734:
724:
692:
683:
682:
666:
657:
651:Mark B. Gerstein
648:
639:
638:
603:
597:
591:Mark B. Gerstein
588:
577:
576:
571:. Archived from
561:
552:
551:
544:
361:Ruth Lynden-Bell
353:Bachelor of Arts
327:Computer Science
268:
265:
263:
261:
259:
257:
255:
249:
246:
244:
201:Ruth Lynden-Bell
188:Doctoral advisor
182:
30:
21:
2738:
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2733:
2732:
2731:
2729:
2728:
2727:
2668:
2667:
2666:
2661:
2617:Mikhail Gelfand
2595:
2541:A. Keith Dunker
2524:
2495:Rafael Irizarry
2475:Mark Borodovsky
2453:
2422:
2408:William Pearson
2371:
2337:Andrea Califano
2320:
2306:Anna Tramontano
2301:Sarah Teichmann
2256:Helen M. Berman
2244:
2230:Thomas Lengauer
2193:
2157:
2153:Steven Salzberg
2138:Minoru Kanehisa
2133:David Eisenberg
2116:
2070:
2039:
2015:Lawrence Hunter
1998:
1952:
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1614:Genome Research
1606:
1605:
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1523:
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1513:
1512:
1508:
1479:(5426): 312–3.
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1217:10.1038/447142a
1189:
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1130:
1129:
1125:
1088:Genome Research
1081:
1080:
1076:
1028:
1027:
1023:
977:
976:
972:
949:(23): 2968–70.
936:
935:
931:
922:
915:
890:10.1038/nrg2484
871:
870:
866:
813:Abecasis, G. R.
807:
806:
802:
787:
786:
782:
773:
771:
762:
761:
757:
751:
746:indexed by the
742:
738:
707:(18): 4280–90.
694:
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649:
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605:
604:
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589:
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563:
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466:
445:Genome Research
413:cancer genomics
397:
349:summa cum laude
346:Harvard College
342:
331:Yale University
317:, Professor of
309:, Professor of
271:
252:
241:
205:
180:
164:
160:Yale University
111:
78:
60:Alma mater
46:
45:
35:
28:
23:
22:
15:
12:
11:
5:
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2639:
2634:
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2614:
2609:
2607:Barbara Bryant
2603:
2601:
2597:
2596:
2594:
2593:
2588:
2583:
2578:
2573:
2568:
2563:
2558:
2553:
2551:Wolfgang Huber
2548:
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2393:Hanah Margalit
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315:Biochemistry
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2225:Des Higgins
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2056:Phil Bourne
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2010:Russ Altman
1974:Webb Miller
1448:courant.com
927:,' NY Times
611:Chothia, C.
107:ISCB Fellow
103:Scholarship
90:AAAS Fellow
52:Citizenship
47:February 23
2672:Categories
2576:Dana Pe'er
2536:Atul Butte
2418:Mike Steel
2413:Mona Singh
2291:Aviv Regev
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