Knowledge (XXG)

ORF3d

Source đź“ť

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The function of the ORF3d protein is not known, and it is possible that the gene does not code for a protein with any functional role in the viral life cycle. When expressed under experimental conditions in
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and raises the possibility that the gene does not encode a functional protein, despite experimental evidence of protein expression.
2427: 2361: 1588: 843: 2055: 1723: 894: 667:"SARS-CoV-2 ORF3b Is a Potent Interferon Antagonist Whose Activity Is Increased by a Naturally Occurring Elongation Variant" 312:
long and one 33 residues long, the latter of which is known as ORF3d-2. There is experimental evidence from studies such as
2828: 2574: 618:"Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding" 2048: 2043: 1149: 1113: 888: 882: 836: 2676: 2611: 2283: 2259: 2066: 1951: 1857: 1783: 1708: 1603: 1487: 1422: 1342: 1308: 1259: 914: 434: 1352: 1279: 1244: 433:
Finkel Y, Mizrahi O, Nachshon A, Weingarten-Gabbay S, Morgenstern D, Yahalom-Ronen Y, et al. (January 2021).
2234: 2038: 1239: 876: 2733: 2621: 2547: 2485: 2437: 2389: 2341: 2293: 2172: 2021: 1916: 1677: 1583: 1563: 1546: 1396: 1284: 1219: 1123: 868: 36: 1005: 1000: 995: 990: 985: 980: 975: 970: 965: 960: 955: 944: 933: 928: 1142: 1015: 1386: 1096: 1091: 556:"Conflicting and ambiguous names of overlapping ORFs in the SARS-CoV-2 genome: A homology-based resolution" 2796: 2632: 2517: 1357: 2766: 2657: 2537: 2409: 2269: 293: 189:
There has been significant confusion in the scientific literature around the nomenclature used for the
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analysis of the ORF3d region suggests that the sequence of the predicted protein product is not well
2239: 1633: 1623: 1542: 496:"ORF8 and ORF3b antibodies are accurate serological markers of early and late SARS-CoV-2 infection" 2761: 2638: 525: 473: 313: 309: 279: 247: 166: 135: 2213: 1961: 1900: 1665: 815: 745: 696: 647: 595: 517: 465: 412: 275: 190: 2475: 2081: 1818: 1813: 1808: 1803: 1798: 1793: 1772: 949: 805: 795: 787: 735: 727: 686: 678: 637: 629: 585: 575: 567: 507: 457: 402: 392: 243: 198: 768:"SARS-CoV-2 gene content and COVID-19 mutation impact by comparing 44 Sarbecovirus genomes" 2705: 2162: 2152: 1905: 150: 76: 783: 665:
Konno Y, Kimura I, Uriu K, Fukushi M, Irie T, Koyanagi Y, et al. (September 2020).
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Nelson CW, Ardern Z, Goldberg TL, Meng C, Kuo CH, Ludwig C, et al. (October 2020).
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Jungreis I, Nelson CW, Ardern Z, Finkel Y, Krogan NJ, Sato K, et al. (June 2021).
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for expression of at least ORF3d-2, without clear evidence for the full-length ORF3d.
2822: 2728: 2379: 1840: 1477: 1194: 1169: 1165: 529: 477: 263: 381:"Dynamically evolving novel overlapping gene as a factor in the SARS-CoV-2 pandemic" 2448: 2400: 2352: 2304: 2225: 2010: 1846: 1523: 1332: 1199: 1173: 494:
Hachim A, Kavian N, Cohen CA, Chin AW, Chu DK, Mok CK, et al. (October 2020).
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of the same sequence region encoding functional proteins. ORF3d is not present in
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Lam JY, Yuen CK, Ip JD, Wong WM, To KK, Yuen KY, Kok KH (December 2020).
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genome. This potentially represents a rare example of all three possible
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Lu R, Zhao X, Li J, Niu P, Yang B, Wu H, et al. (February 2020).
2558: 2496: 2244: 2183: 2076: 1574: 1230: 919: 170: 121:, though it is not found in other closely related viruses within the 2129: 2119: 2114: 2099: 2094: 2089: 1696: 1691: 1686: 1073: 1068: 1063: 1053: 1048: 1033: 1028: 1023: 270:
or other related coronaviruses, except for a coronavirus found in
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have been described, of which the shorter 33-residue form,
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The recommended nomenclature for SARS-CoV-2 uses the term
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from ORF3d have been reported in patients recovered from
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with truncations in ORF3d due to the introduction of a
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have been identified with relatively high prevalence.
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to the ORF3d protein occur in patients recovered from
716:"Loss of orf3b in the circulating SARS-CoV-2 strains" 2787: 2778: 2755: 2692: 2619: 2610: 2601: 2557: 2545: 2536: 2495: 2483: 2474: 2447: 2435: 2426: 2399: 2387: 2378: 2351: 2339: 2330: 2303: 2291: 2282: 2257: 2224: 2182: 2170: 2161: 2146: 2064: 2019: 2004: 1949: 1914: 1899: 1884: 1855: 1831: 1781: 1766: 1753: 1744: 1706: 1675: 1664: 1613: 1601: 1573: 1561: 1532: 1514: 1485: 1476: 1451: 1420: 1394: 1385: 1374: 1340: 1331: 1306: 1297: 1257: 1229: 1217: 1208: 1190: 1181: 1082: 1014: 913: 867: 82: 72: 67: 51: 43: 31: 26: 21: 549: 547: 545: 543: 541: 539: 1150: 1119:Coronavirus frameshifting stimulation element 844: 489: 487: 428: 426: 374: 372: 370: 368: 366: 364: 362: 360: 8: 1107:Coronavirus 3′ stem-loop II-like motif (s2m) 766:Jungreis I, Sealfon R, Kellis M (May 2021). 230:end of ORF3b in SARS-CoV, and uses the term 2784: 2775: 2616: 2607: 2554: 2542: 2492: 2480: 2444: 2432: 2396: 2384: 2348: 2336: 2300: 2288: 2179: 2167: 2158: 2016: 1911: 1896: 1852: 1778: 1763: 1750: 1672: 1610: 1570: 1558: 1529: 1482: 1391: 1382: 1337: 1303: 1226: 1214: 1205: 1187: 1157: 1143: 1135: 851: 837: 829: 64: 2314:Parainfluenza hemagglutinin-neuraminidase 809: 799: 739: 690: 641: 611: 609: 589: 579: 511: 406: 396: 226:for the 22-codon gene homologous to the 356: 18: 2458:Respiratory syncytial virus G protein 329:, the ORF3d protein appears to be an 7: 435:"The coding capacity of SARS-CoV-2" 113:) and at least one closely related 720:Emerging Microbes & Infections 141:of unknown function. At least two 14: 2362:Mumps hemagglutinin-neuraminidase 173:of the otherwise closely related 1724:Hepatitis B virus DNA polymerase 904: 1555:(non-enveloped circular ds-DNA) 1: 2575:Vesiculovirus matrix proteins 1102:Coronavirus 3′ UTR pseudoknot 732:10.1080/22221751.2020.1852892 634:10.1016/S0140-6736(20)30251-8 2834:Viral nonstructural proteins 1114:Coronavirus packaging signal 683:10.1016/j.celrep.2020.108185 134:long and encodes a novel 57 2612:Structure and genome of HIV 1669:(circular partially ds-DNA) 915:Viral nonstructural protein 572:10.1016/j.virol.2021.02.013 2850: 1245:Herpesvirus glycoprotein B 792:10.1038/s41467-021-22905-7 304:The ORF3d protein has two 177:(which causes the disease 1240:HHV capsid portal protein 902: 513:10.1038/s41590-020-0773-7 462:10.1038/s41586-020-2739-1 63: 1124:Human identical sequence 1006:nonstructural protein 16 1001:nonstructural protein 15 996:nonstructural protein 14 991:nonstructural protein 13 986:nonstructural protein 12 981:nonstructural protein 11 976:nonstructural protein 10 869:Viral structural protein 16:Gene found in SARS-CoV-2 2235:Influenza hemagglutinin 1016:Viral accessory protein 971:nonstructural protein 9 966:nonstructural protein 8 961:nonstructural protein 7 956:nonstructural protein 6 945:nonstructural protein 4 934:nonstructural protein 2 929:nonstructural protein 1 234:for the 57-codon gene. 209:in SARS-CoV (about 155 109:(the virus that causes 2797:Gag-onc fusion protein 2767:murine leukemia virus 2658:Reverse transcriptase 2538:Indiana vesiculovirus 2410:Measles hemagglutinin 772:Nature Communications 197:, especially several 149:, may be more highly 2829:Coronavirus proteins 1498:Early 35 kDa protein 939:papain-like protease 895:nucleocapsid protein 238:Comparative genomics 784:2021NatCo..12.2642J 454:2021Natur.589..125F 398:10.7554/eLife.59633 310:amino acid residues 280:SARS-CoV-2 variants 2762:Rous sarcoma virus 1097:Coronavirus 3′ UTR 1092:Coronavirus 5′ UTR 628:(10224): 565–574. 314:ribosome profiling 278:, and examples of 248:open reading frame 191:accessory proteins 136:amino acid residue 2816: 2815: 2812: 2811: 2808: 2807: 2804: 2803: 2751: 2750: 2597: 2596: 2593: 2592: 2589: 2588: 2585: 2584: 2532: 2531: 2528: 2527: 2470: 2469: 2466: 2465: 2422: 2421: 2418: 2417: 2374: 2373: 2370: 2369: 2326: 2325: 2322: 2321: 2278: 2277: 2253: 2252: 2142: 2141: 2138: 2137: 2000: 1999: 1880: 1879: 1876: 1875: 1827: 1826: 1740: 1739: 1736: 1735: 1732: 1731: 1660: 1659: 1647: 1646: 1597: 1596: 1510: 1509: 1506: 1505: 1472: 1471: 1370: 1369: 1366: 1365: 1327: 1326: 1293: 1292: 1253: 1252: 1132: 1131: 506:(10): 1293–1301. 500:Nature Immunology 448:(7840): 125–130. 276:COVID-19 pandemic 199:overlapping genes 96: 95: 92: 91: 2841: 2785: 2776: 2617: 2608: 2555: 2543: 2493: 2481: 2476:Zaire ebolavirus 2445: 2433: 2397: 2385: 2349: 2337: 2301: 2289: 2180: 2168: 2159: 2082:3C-like protease 2017: 1912: 1897: 1853: 1779: 1773:Duplornaviricota 1764: 1751: 1673: 1611: 1571: 1559: 1530: 1483: 1392: 1383: 1338: 1304: 1227: 1215: 1206: 1188: 1159: 1152: 1145: 1136: 950:3C-like protease 918:(expressed from 908: 889:membrane protein 883:envelope protein 853: 846: 839: 830: 824: 823: 813: 803: 763: 754: 753: 743: 726:(1): 2685–2696. 711: 705: 704: 694: 662: 656: 655: 645: 613: 604: 603: 593: 583: 551: 534: 533: 515: 491: 482: 481: 439: 430: 421: 420: 410: 400: 376: 244:overlapping gene 65: 39: 19: 2849: 2848: 2844: 2843: 2842: 2840: 2839: 2838: 2819: 2818: 2817: 2800: 2747: 2706:transactivators 2688: 2581: 2524: 2462: 2414: 2366: 2318: 2274: 2249: 2220: 2163:Influenza virus 2153:Negarnaviricota 2150: 2148: 2134: 2060: 2008: 1996: 1945: 1906:Kitrinoviricota 1903: 1888: 1886: 1872: 1844: 1823: 1770: 1755: 1728: 1702: 1668: 1656: 1643: 1593: 1554: 1536: 1522: 1516: 1502: 1468: 1447: 1416: 1378: 1377:(Duplodnaviria, 1376: 1375:circular ds-DNA 1362: 1323: 1289: 1249: 1198: 1192: 1177: 1163: 1133: 1128: 1078: 1010: 917: 909: 900: 863: 857: 827: 765: 764: 757: 713: 712: 708: 664: 663: 659: 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2320: 2319: 2317: 2316: 2310: 2308: 2298: 2286: 2280: 2279: 2276: 2275: 2273: 2272: 2266: 2264: 2255: 2254: 2251: 2250: 2248: 2247: 2242: 2237: 2231: 2229: 2222: 2221: 2219: 2218: 2217: 2216: 2208:viral envelope 2204: 2203: 2202: 2194:matrix protein 2189: 2187: 2177: 2165: 2156: 2149:negative-sense 2144: 2143: 2140: 2139: 2136: 2135: 2133: 2132: 2127: 2122: 2117: 2112: 2107: 2102: 2097: 2092: 2087: 2086: 2085: 2073: 2071: 2062: 2061: 2059: 2058: 2053: 2052: 2051: 2046: 2041: 2033:viral envelope 2028: 2026: 2014: 2002: 2001: 1998: 1997: 1995: 1994: 1989: 1984: 1979: 1974: 1969: 1964: 1958: 1956: 1947: 1946: 1944: 1943: 1942: 1941: 1936: 1928:viral envelope 1923: 1921: 1909: 1894: 1887:positive-sense 1882: 1881: 1878: 1877: 1874: 1873: 1871: 1870: 1864: 1862: 1850: 1829: 1828: 1825: 1824: 1822: 1821: 1816: 1811: 1806: 1801: 1796: 1790: 1788: 1776: 1761: 1748: 1742: 1741: 1738: 1737: 1734: 1733: 1730: 1729: 1727: 1726: 1721: 1715: 1713: 1704: 1703: 1701: 1700: 1699: 1689: 1684: 1682: 1670: 1662: 1661: 1658: 1657: 1655: 1654: 1648: 1645: 1644: 1642: 1641: 1631: 1626: 1620: 1618: 1608: 1599: 1598: 1595: 1594: 1592: 1591: 1586: 1580: 1578: 1568: 1556: 1534:Polyomaviridae 1527: 1512: 1511: 1508: 1507: 1504: 1503: 1501: 1500: 1494: 1492: 1480: 1474: 1473: 1470: 1469: 1467: 1466: 1460: 1458: 1449: 1448: 1446: 1445: 1440: 1435: 1429: 1427: 1418: 1417: 1415: 1414: 1409: 1403: 1401: 1389: 1380: 1379:Varidnaviria?) 1372: 1371: 1368: 1367: 1364: 1363: 1361: 1360: 1355: 1349: 1347: 1335: 1329: 1328: 1325: 1324: 1322: 1321: 1315: 1313: 1301: 1295: 1294: 1291: 1290: 1288: 1287: 1282: 1277: 1272: 1266: 1264: 1255: 1254: 1251: 1250: 1248: 1247: 1242: 1236: 1234: 1224: 1212: 1210:Herpes simplex 1203: 1185: 1179: 1178: 1166:Viral proteins 1164: 1162: 1161: 1154: 1147: 1139: 1130: 1129: 1127: 1126: 1121: 1116: 1111: 1110: 1109: 1104: 1094: 1088: 1086: 1080: 1079: 1077: 1076: 1071: 1066: 1061: 1056: 1051: 1046: 1041: 1036: 1031: 1026: 1020: 1018: 1012: 1011: 1009: 1008: 1003: 998: 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There is no 94: 93: 90: 89: 84: 80: 79: 74: 70: 69: 61: 60: 55: 49: 48: 45: 41: 40: 33: 29: 28: 24: 23: 15: 13: 10: 9: 6: 4: 3: 2: 2846: 2835: 2832: 2830: 2827: 2826: 2824: 2798: 2795: 2793: 2790: 2786: 2783: 2781: 2777: 2774: 2768: 2765: 2763: 2760: 2759: 2758: 2757: 2754: 2744: 2740: 2737: 2735: 2732: 2730: 2727: 2723: 2720: 2718: 2715: 2713: 2710: 2709: 2708: 2707: 2703: 2702: 2700: 2698: 2696: 2691: 2683: 2680: 2678: 2675: 2674: 2673: 2672: 2668: 2664: 2661: 2659: 2656: 2654: 2651: 2650: 2649: 2648: 2644: 2640: 2637: 2636: 2635: 2634: 2630: 2629: 2627: 2625: 2623: 2618: 2615: 2613: 2609: 2606: 2604: 2600: 2576: 2573: 2572: 2571: 2570: 2566: 2565: 2563: 2560: 2556: 2553: 2551: 2549: 2544: 2541: 2539: 2535: 2519: 2516: 2514: 2511: 2510: 2509: 2508: 2504: 2503: 2501: 2498: 2494: 2491: 2489: 2487: 2482: 2479: 2477: 2473: 2459: 2456: 2455: 2453: 2450: 2446: 2443: 2441: 2439: 2434: 2431: 2429: 2425: 2411: 2408: 2407: 2405: 2402: 2398: 2395: 2393: 2391: 2386: 2383: 2381: 2377: 2363: 2360: 2359: 2357: 2354: 2350: 2347: 2345: 2343: 2338: 2335: 2333: 2329: 2315: 2312: 2311: 2309: 2306: 2302: 2299: 2297: 2295: 2290: 2287: 2285: 2284:Parainfluenza 2281: 2271: 2268: 2267: 2265: 2263: 2261: 2256: 2246: 2243: 2241: 2240:Neuraminidase 2238: 2236: 2233: 2232: 2230: 2227: 2223: 2215: 2212: 2211: 2210: 2209: 2205: 2201: 2198: 2197: 2196: 2195: 2191: 2190: 2188: 2185: 2181: 2178: 2176: 2174: 2169: 2166: 2164: 2160: 2157: 2154: 2145: 2131: 2128: 2126: 2123: 2121: 2118: 2116: 2113: 2111: 2108: 2106: 2103: 2101: 2098: 2096: 2093: 2091: 2088: 2083: 2080: 2079: 2078: 2075: 2074: 2072: 2070: 2068: 2063: 2057: 2054: 2050: 2047: 2045: 2042: 2040: 2037: 2036: 2035: 2034: 2030: 2029: 2027: 2025: 2023: 2018: 2015: 2012: 2007: 2003: 1993: 1990: 1988: 1985: 1983: 1980: 1978: 1975: 1973: 1970: 1968: 1965: 1963: 1960: 1959: 1957: 1955: 1953: 1948: 1940: 1937: 1935: 1932: 1931: 1930: 1929: 1925: 1924: 1922: 1920: 1918: 1913: 1910: 1907: 1902: 1898: 1895: 1892: 1883: 1869: 1866: 1865: 1863: 1861: 1859: 1854: 1851: 1848: 1842: 1838: 1834: 1830: 1820: 1817: 1815: 1812: 1810: 1807: 1805: 1802: 1800: 1797: 1795: 1792: 1791: 1789: 1787: 1785: 1780: 1777: 1774: 1769: 1765: 1762: 1759: 1752: 1749: 1747: 1743: 1725: 1722: 1720: 1717: 1716: 1714: 1712: 1710: 1705: 1698: 1695: 1694: 1693: 1690: 1688: 1685: 1683: 1681: 1679: 1674: 1671: 1667: 1663: 1653: 1650: 1649: 1639: 1635: 1632: 1630: 1627: 1625: 1622: 1621: 1619: 1616: 1612: 1609: 1607: 1605: 1600: 1590: 1587: 1585: 1582: 1581: 1579: 1576: 1572: 1569: 1567: 1565: 1560: 1557: 1552: 1548: 1544: 1540: 1535: 1531: 1528: 1525: 1520: 1513: 1499: 1496: 1495: 1493: 1491: 1489: 1484: 1481: 1479: 1478:Baculoviridae 1475: 1465: 1462: 1461: 1459: 1457: 1455: 1450: 1444: 1441: 1439: 1436: 1434: 1431: 1430: 1428: 1426: 1424: 1419: 1413: 1410: 1408: 1405: 1404: 1402: 1400: 1398: 1393: 1390: 1388: 1384: 1381: 1373: 1359: 1356: 1354: 1351: 1350: 1348: 1346: 1344: 1339: 1336: 1334: 1330: 1320: 1317: 1316: 1314: 1312: 1310: 1305: 1302: 1300: 1296: 1286: 1283: 1281: 1278: 1276: 1273: 1271: 1268: 1267: 1265: 1263: 1261: 1256: 1246: 1243: 1241: 1238: 1237: 1235: 1232: 1228: 1225: 1223: 1221: 1216: 1213: 1211: 1207: 1204: 1201: 1196: 1195:Duplodnaviria 1191:linear ds-DNA 1189: 1186: 1184: 1180: 1175: 1171: 1167: 1160: 1155: 1153: 1148: 1146: 1141: 1140: 1137: 1125: 1122: 1120: 1117: 1115: 1112: 1108: 1105: 1103: 1100: 1099: 1098: 1095: 1093: 1090: 1089: 1087: 1085: 1081: 1075: 1072: 1070: 1067: 1065: 1062: 1060: 1057: 1055: 1052: 1050: 1047: 1045: 1042: 1040: 1037: 1035: 1032: 1030: 1027: 1025: 1022: 1021: 1019: 1017: 1013: 1007: 1004: 1002: 999: 997: 994: 992: 989: 987: 984: 982: 979: 977: 974: 972: 969: 967: 964: 962: 959: 957: 954: 951: 948: 946: 943: 940: 937: 935: 932: 930: 927: 926: 924: 921: 916: 912: 907: 896: 893: 890: 887: 884: 881: 878: 877:spike protein 875: 874: 872: 870: 866: 861: 854: 849: 847: 842: 840: 835: 834: 831: 821: 817: 812: 807: 802: 801:1721.1/130581 797: 793: 789: 785: 781: 777: 773: 769: 762: 760: 756: 751: 747: 742: 737: 733: 729: 725: 721: 717: 710: 707: 702: 698: 693: 688: 684: 680: 676: 672: 668: 661: 658: 653: 649: 644: 639: 635: 631: 627: 623: 619: 612: 610: 606: 601: 597: 592: 587: 582: 581:1721.1/130363 577: 573: 569: 565: 561: 557: 550: 548: 546: 544: 542: 540: 536: 531: 527: 523: 519: 514: 509: 505: 501: 497: 490: 488: 484: 479: 475: 471: 467: 463: 459: 455: 451: 447: 443: 436: 429: 427: 423: 418: 414: 409: 404: 399: 394: 390: 386: 382: 375: 373: 371: 369: 367: 365: 363: 361: 357: 351: 349: 347: 343: 340:responses to 339: 334: 333:antagonist. 332: 328: 319: 317: 315: 311: 307: 299: 297: 295: 291: 287: 285: 281: 277: 273: 269: 265: 261: 257: 253: 249: 245: 237: 235: 233: 229: 225: 224: 218: 217:antagonists. 216: 212: 208: 204: 200: 196: 192: 184: 182: 180: 176: 172: 168: 164: 160: 156: 152: 148: 144: 140: 137: 133: 129: 126: 125: 120: 116: 112: 108: 104: 100: 88: 85: 81: 78: 75: 71: 66: 62: 59: 56: 54: 50: 46: 42: 38: 34: 30: 25: 20: 2704: 2693: 2669: 2645: 2631: 2620: 2567: 2546: 2505: 2484: 2449:glycoprotein 2436: 2401:glycoprotein 2388: 2353:glycoprotein 2340: 2305:glycoprotein 2292: 2258: 2226:glycoprotein 2206: 2192: 2171: 2104: 2065: 2056:Nucleocapsid 2031: 2020: 2011:Pisuviricota 1950: 1926: 1915: 1856: 1847:Pisuviricota 1782: 1707: 1676: 1602: 1562: 1524:Monodnaviria 1486: 1452: 1421: 1395: 1387:Epstein–Barr 1341: 1333:Adenoviridae 1307: 1258: 1218: 1200:Varidnaviria 1038: 775: 771: 723: 719: 709: 674: 671:Cell Reports 670: 660: 625: 621: 563: 559: 503: 499: 445: 441: 388: 384: 335: 327:cell culture 323: 303: 288: 242:ORF3d is an 241: 231: 221: 219: 188: 185:Nomenclature 146: 124:Sarbecovirus 122: 98: 97: 2789:oncoprotein 1901:Hepatitis C 1666:Hepatitis B 1652:Agnoprotein 1615:oncoprotein 1589:VP2 and VP3 860:Coronavirus 778:(1): 2642. 566:: 145–151. 130:. It is 57 115:coronavirus 77:Swiss-model 27:Identifiers 2823:Categories 2214:M2 protein 2200:M1 protein 2006:SARS-CoV-2 391:: e59633. 352:References 331:interferon 300:Expression 284:stop codon 260:SARS-CoV-2 215:interferon 195:SARS-CoV-2 159:antibodies 107:SARS-CoV-2 73:Structures 68:Search for 37:SARS-CoV-2 2756:Multiple 2653:Integrase 1891:Riboviria 1768:Rotavirus 1758:Riboviria 1519:Riboviria 530:221136730 478:218582461 308:, one 57 294:conserved 272:pangolins 155:antigenic 151:expressed 119:pangolins 117:found in 105:found in 2049:Membrane 2044:Envelope 1638:SV40 Tag 1299:Vaccinia 820:33976134 750:33205709 701:32941788 652:32007145 600:33774510 560:Virology 522:32807944 470:32906143 417:33001029 346:COVID-19 342:peptides 338:antibody 320:Function 306:isoforms 268:SARS-CoV 175:SARS-CoV 163:COVID-19 143:isoforms 128:subgenus 111:COVID-19 87:InterPro 32:Organism 2380:Measles 1833:Rhinov. 1280:ICP34.5 862:genomes 811:8113528 780:Bibcode 741:7782295 692:7473339 643:7159086 591:7967279 450:Bibcode 408:7655111 336:Robust 258:in the 169:in the 167:homolog 147:ORF3d-2 139:protein 83:Domains 53:UniProt 2559:capsid 2497:capsid 2245:HA-tag 2184:capsid 2147:ss-RNA 2077:ORF1ab 1885:ss-RNA 1845:etc. ( 1754:ds-RNA 1575:capsid 1443:EBNA-3 1438:EBNA-2 1433:EBNA-1 1231:capsid 952:(nsp5) 941:(nsp3) 920:ORF1ab 818:  808:  748:  738:  699:  689:  650:  640:  622:Lancet 598:  588:  528:  520:  476:  468:  442:Nature 415:  405:  246:whose 211:codons 171:genome 132:codons 58:P0DTG0 44:Symbol 2695:VRAPs 2677:gp120 2332:Mumps 2130:ORF9b 2120:ORF7b 2115:ORF7a 2105:ORF3d 2100:ORF3c 2095:ORF3b 2090:ORF3a 2084:(NS5) 2039:Spike 1841:Hep A 1837:Polio 1697:HBeAg 1692:HBcAg 1687:HBsAg 1551:HaPyV 1547:MCPyV 1515:other 1454:ncRNA 1412:LMP-2 1407:LMP-1 1285:ICP47 1270:vmw65 1170:early 1074:ORF10 1069:ORF9c 1064:ORF9b 1054:ORF7b 1049:ORF7a 1039:ORF3d 1034:ORF3c 1029:ORF3b 1024:ORF3a 526:S2CID 474:S2CID 438:(PDF) 385:eLife 256:ORF3c 252:ORF3a 232:ORF3d 223:ORF3b 207:ORF3b 203:ORF3a 201:with 101:is a 99:ORF3d 47:ORF3d 22:ORF3d 2682:gp41 2622:VSPs 2548:VSPs 2518:VP24 2513:VP40 2486:VSPs 2438:VSPs 2390:VSPs 2342:VSPs 2294:VSPs 2260:VNPs 2173:VSPs 2125:ORF8 2110:ORF6 2067:VNPs 2022:VSPs 1992:NS5B 1987:NS5A 1982:NS4B 1977:NS4A 1952:VNPs 1917:VSPs 1858:VNPs 1819:NSP6 1814:NSP5 1809:NSP4 1804:NSP3 1799:NSP2 1794:NSP1 1784:VNPs 1709:VNPs 1678:VSPs 1634:LTag 1629:MTag 1624:STag 1604:VNPs 1564:VSPs 1543:MPyV 1539:SV40 1488:VNPs 1464:EBER 1423:VNPs 1397:VSPs 1343:VNPs 1319:B13R 1309:VNPs 1275:ICP8 1260:VNPs 1220:VSPs 1174:late 1172:and 1059:ORF8 1044:ORF6 816:PMID 746:PMID 697:PMID 648:PMID 596:PMID 518:PMID 466:PMID 413:PMID 254:and 179:SARS 157:and 103:gene 2743:Vpx 2741:or 2739:Vpu 2734:Vif 2729:Nef 2722:Vpr 2717:Rev 2712:Tat 2671:env 2647:pol 2639:p24 2633:gag 2428:RSV 2270:NS1 1972:NS3 1967:NS2 1868:VPg 1746:RNA 1719:HBx 1584:VP1 1358:E1B 1353:E1A 1183:DNA 1084:RNA 897:(N) 891:(M) 885:(E) 879:(S) 806:PMC 796:hdl 788:doi 736:PMC 728:doi 687:PMC 679:doi 638:PMC 630:doi 626:395 586:PMC 576:hdl 568:doi 564:558 508:doi 458:doi 446:589 403:PMC 393:doi 348:. 193:of 181:). 2825:: 2603:RT 1962:P7 1939:E2 1934:E1 1839:, 1835:, 1549:, 1545:, 1541:, 814:. 804:. 794:. 786:. 776:12 774:. 770:. 758:^ 744:. 734:. 722:. 718:. 695:. 685:. 675:32 673:. 669:. 646:. 636:. 624:. 620:. 608:^ 594:. 584:. 574:. 562:. 558:. 538:^ 524:. 516:. 504:21 502:. 498:. 486:^ 472:. 464:. 456:. 444:. 440:. 425:^ 411:. 401:. 387:. 383:. 359:^ 228:5' 2791:: 2697:: 2624:: 2561:: 2550:: 2499:: 2488:: 2451:: 2440:: 2403:: 2392:: 2355:: 2344:: 2307:: 2296:: 2262:: 2228:: 2186:: 2175:: 2155:) 2151:( 2069:: 2024:: 2013:) 2009:( 1954:: 1919:: 1908:) 1904:( 1893:) 1889:( 1860:: 1849:) 1843:, 1786:: 1775:) 1771:( 1760:) 1756:( 1711:: 1680:: 1640:) 1636:( 1617:: 1606:: 1577:: 1566:: 1553:) 1537:( 1526:) 1521:, 1517:( 1490:: 1456:: 1425:: 1399:: 1345:: 1311:: 1262:: 1233:: 1222:: 1202:) 1197:, 1193:( 1176:) 1168:( 1158:e 1151:t 1144:v 922:) 852:e 845:t 838:v 822:. 798:: 790:: 782:: 752:. 730:: 724:9 703:. 681:: 654:. 632:: 602:. 578:: 570:: 532:. 510:: 480:. 460:: 452:: 419:. 395:: 389:9

Index

SARS-CoV-2
UniProt
P0DTG0
Swiss-model
InterPro
gene
SARS-CoV-2
COVID-19
coronavirus
pangolins
Sarbecovirus
subgenus
codons
amino acid residue
protein
isoforms
expressed
antigenic
antibodies
COVID-19
homolog
genome
SARS-CoV
SARS
accessory proteins
SARS-CoV-2
overlapping genes
ORF3a
ORF3b
codons

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