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Adenylate kinase

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720: 743: 778:) can fold and unfold in a "non-cooperative manner." Binding of the substrates causes preference for 'closed' conformations amongst those that are sampled by ADK. These 'closed' conformations are hypothesized to help with removal of water from the active site to avoid wasteful hydrolysis of ATP in addition to helping optimize alignment of substrates for phosphoryl-transfer. Furthermore, it has been shown that the apoenzyme will still sample the 'closed' conformations of the ATP 29: 635:
are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Some residues are conserved across these isoforms, indicating how essential they are for catalysis. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.
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the cellular level. As energy levels change under different metabolic stresses adenylate kinase is then able to generate AMP; which itself acts as a signaling molecule in further signaling cascades. This generated AMP can, for example, stimulate various AMP-dependent receptors such as those involved in glycolytic pathways, K-ATP channels, and 5' AMP-activated protein kinase (
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Arg119, which lies in the adenosine binding region of the ADK, and acts to sandwich the adenine in the active site. It has been suggested that the promiscuity of these enzymes in accepting other NTP's is due to this relatively inconsequential interactions of the base in the ATP binding pocket. A network of positive,
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Phosphoryl transfer only occurs on closing of the 'open lid'. This causes an exclusion of water molecules that brings the substrates in proximity to each other, lowering the energy barrier for the nucleophilic attack by the α-phosphoryl of AMP on the γ-phosphoryl group of ATP resulting in formation
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of cells; and ADK7 is found in skeletal muscle whereas ADK8 is not. Not only do the locations of the various isoforms within the cell vary, but the binding of substrate to the enzyme and kinetics of the phosphoryl transfer are different as well. ADK1, the most abundant cytosolic ADK isozyme, has a
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A 2007 study by Whitford et al. shows the conformations of ADK when binding with ATP or AMP. The study shows that there are three relevant conformations or structures of ADK—CORE, Open, and Closed. In ADK, there are two small domains called the LID and NMP. ATP binds in the pocket formed by the LID
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Some of these isoforms prefer other NTP's entirely. There is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, that can only use GTP or ITP as the phosphoryl donor. ADK has also been identified in different bacterial species and in yeast. Two further enzymes
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The ability for a cell to dynamically measure energetic levels provides it with a method to monitor metabolic processes. By continually monitoring and altering the levels of ATP and the other adenyl phosphates (ADP and AMP levels) adenylate kinase is an important regulator of energy expenditure at
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with inhibitor Ap5A, the Arg88 residue binds the Ap5A at the α-phosphate group. It has been shown that the mutation R88G results in 99% loss of catalytic activity of this enzyme, suggesting that this residue is intimately involved in the phosphoryl transfer. Another highly conserved residue is
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Lagresle-Peyrou C, Six EM, Picard C, Rieux-Laucat F, Michel V, Ditadi A, Demerens-de Chappedelaine C, Morillon E, Valensi F, Simon-Stoos KL, Mullikin JC, Noroski LM, Besse C, Wulffraat NM, Ferster A, Abecasis MM, Calvo F, Petit C, Candotti F, Abel L, Fischer A, Cavazzana-Calvo M (January 2009).
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Adenylate kinase is present in mitochondrial and myofibrillar compartments in the cell, and it makes two high-energy phosphoryls (β and γ) of ATP available to be transferred between adenine nucleotide molecules. In essence, adenylate kinase shuttles ATP to sites of high energy consumption and
805:). Common factors that influence adenine nucleotide levels, and therefore ADK activity are exercise, stress, changes in hormone levels, and diet. It facilitates decoding of cellular information by catalyzing nucleotide exchange in the intimate “sensing zone” of metabolic sensors. 883:. It is also characterized by an impaired lymphoid maturation and early differentiation arrest in the myeloid lineage. AK2 deficiency results in absent or a large decrease in the expression of proteins. AK2 is specifically expressed in the stria vascularis of the 751:
and CORE domains. AMP binds in the pocket formed by the NMP and CORE domains. The Whitford study also reported findings that show that localized regions of a protein unfold during conformational transitions. This mechanism reduces the
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Knock out of AK1 disrupts the synchrony between inorganic phosphate and turnover at ATP-consuming sites and ATP synthesis sites. This reduces the energetic signal communication in the post-ischemic heart and precipitates inadequate
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removes the AMP generated over the course of those reactions. These sequential phosphotransfer relays ultimately result in propagation of the phosphoryl groups along collections of ADK molecules. This process can be thought of as a
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domains in the absence of substrates. When comparing the rate of opening of the enzyme (which allows for product release) and the rate of closing that accompanies substrate binding, closing was found to be the slower process.
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of ADK molecules that results in changes in local intracellular metabolic flux without apparent global changes in metabolite concentrations. This process is extremely important for overall homeostasis of the cell.
706:) stabilize the buildup of negative charge on phosphoryl group during the transfer. Two distal aspartate residues bind to the arginine network, causing the enzyme to fold and reduces its flexibility. A magnesium 197:
that catalyzes the interconversion of the various adenosine phosphates (ATP, ADP, and AMP). By constantly monitoring phosphate nucleotide levels inside the cell, ADK plays an important role in cellular energy
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The equilibrium constant varies with condition, but it is close to 1. Thus, ΔG for this reaction is close to zero. In muscle from a variety of species of vertebrates and invertebrates, the concentration of
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Henzler-Wildman KA, Thai V, Lei M, Ott M, Wolf-Watz M, Fenn T, Pozharski E, Wilson MA, Petsko GA, Karplus M, HĂĽbner CG, Kern D (December 2007). "Intrinsic motions along an enzymatic reaction trajectory".
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is also required, essential for increasing the electrophilicity of the phosphate on AMP, though this magnesium ion is only held in the active pocket by electrostatic interactions and dissociates easily.
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in the protein. Each isoform also has different preference for NTP's. Some will only use ATP, whereas others will accept GTP, UTP, and CTP as the phosphoryl carrier.
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identified. While some of these are ubiquitous throughout the body, some are localized into specific tissues. For example, ADK7 and ADK8 are both only found in the
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AK1 genetic ablation decreases tolerance to metabolic stress. AK1 deficiency induces fiber-type specific variation in groups of transcripts in
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Rundqvist L, Adén J, Sparrman T, Wallgren M, Olsson U, Wolf-Watz M (March 2009). "Noncooperative folding of subdomains in adenylate kinase".
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PDB image 3HPQ showing the ADK enzyme skeleton in cartoon and the key residues as sticks and labeled according to their placement in
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of ADK7 and 8, indicating a much weaker binding of ADK1 to AMP. Sub-cellular localization of the ADK enzymes is done by including a
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Cooper AJ, Friedberg EC (May 1992). "A putative second adenylate kinase-encoding gene from the yeast Saccharomyces cerevisiae".
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Enhanced growth and elevated photosynthetic amino acid is associated with plastidial adenylate kinase deficiency in
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Carrari F, Coll-Garcia D, Schauer N, Lytovchenko A, Palacios-Rojas N, Balbo I, Rosso M, Fernie AR (January 2005).
846:, adenylate kinase performed dual enzymatic functions. ADK complements nucleoside diphosphate kinase deficiency. 4053: 4040: 4027: 4014: 4001: 3988: 3975: 3740: 3718: 3693: 3668: 3588: 3196: 3156: 3101: 3078: 3050: 3018: 2884: 2168: 1607:"Adenylate kinase and AMP signaling networks: metabolic monitoring, signal communication and body energy sensing" 672: 644: 596: 588: 3947: 2971: 1883:"Adenylate kinase 1 deficiency induces molecular and structural adaptations to support muscle energy metabolism" 3901: 3844: 3205: 3186: 3117: 2851: 2359: 2237: 1987: 478: 371: 176: 755:
and enhances catalytic efficiency. Local unfolding is the result of competing strain energies in the protein.
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Reinstein J, Gilles AM, Rose T, Wittinghofer A, Saint Girons I, Bârzu O, Surewicz WK, Mantsch HH (May 1989).
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of ADP by transfer of the Îł-phosphoryl group to AMP. In the crystal structure of the ADK enzyme from
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Panayiotou C, Solaroli N, Karlsson A (April 2014). "The many isoforms of human adenylate kinases".
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3D ribbon/surface model of adenylate kinase in complex with bis(adenosine)tetraphosphate (ADP-ADP)
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and the inhibitor Ap5A refined at 1.9 A resolution. A model for a catalytic transition state".
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MĂĽller CW, Schulz GE (March 1992). "Structure of the complex between adenylate kinase from
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Nucleoside diphosphate (NDP) kinase catalyzes in vivo ATP-dependent synthesis of ribo- and
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Describes the generic kinetic cycle of the ADK enzyme family. Ternary complex is labeled.
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Janssen E, de Groof A, Wijers M, Fransen J, Dzeja PP, Terzic A, Wieringa B (April 2003).
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which indicates why individuals with an AK2 deficiency will have sensorineural deafness.
1735: 1676: 1558: 1456:"Many local motions cooperate to produce the adenylate kinase conformational transition" 1412: 1216: 946:"Thermodynamics of enzyme-catalyzed reactions--a database for quantitative biochemistry" 932: 417: 4081: 3970: 3911: 3650: 3489: 3396: 3388: 3265: 3228: 1858: 1833: 1805: 1778: 1695: 1660: 1633: 1606: 1480: 1455: 1431: 1396: 1372: 1347: 1141: 1125:"Mitochondrial GTP-AMP phosphotransferase. 2. Kinetic and equilibrium dialysis studies" 1124: 1012: 987: 815: 500: 376: 1958: 1933: 1276: 1255: 28: 4091: 3875: 3834: 2919: 2038: 1754: 1719: 1260:
adenylate kinase as evidenced by chemical modification and site-directed mutagenesis"
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is controlled by the availability of ADP. Thus, the mitochondrion attempts to keep
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has been shown to be significantly lower when compared with the CORE domain in ADK
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Proceedings of the National Academy of Sciences of the United States of America
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Proceedings of the National Academy of Sciences of the United States of America
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levels high due to the combined action of adenylate kinase and the controls on
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Panayiotou C, Solaroli N, Xu Y, Johansson M, Karlsson A (February 2011).
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The local (thermodynamic) stability of the substrate-binding domains ATP
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and mitochondrial metabolism. This supports muscle energy metabolism.
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CDP-diacylglycerol—glycerol-3-phosphate 3-phosphatidyltransferase
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Dzeja PP, Chung S, Faustino RS, Behfar A, Terzic A (April 2011).
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Dzeja PP, Bast P, Pucar D, Wieringa B, Terzic A (October 2007).
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The NIST Thermodynamics of Enzyme-Catalyzed Reactions database,
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The International Journal of Biochemistry & Cell Biology
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Whitford PC, Miyashita O, Levy Y, Onuchic JN (March 2007).
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residues (Lys13, Arg123, Arg156, and Arg167 in ADK from
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This article incorporates text from the public domain
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CDP-diacylglycerol—inositol 3-phosphatidyltransferase
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http://xpdb.nist.gov/enzyme_thermodynamics/enzyme1.pl
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Flexibility and plasticity allow proteins to bind to
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CDP-diacylglycerol—choline O-phosphatidyltransferase
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CDP-diacylglycerol—serine O-phosphatidyltransferase
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In mutated 673:Adenylate kinase, isozyme 1 645:Adenylate kinase, subfamily 558:The reaction catalyzed is: 4119: 3721:: protein-dual-specificity 2444:N-Acetylglutamate synthase 2439:Ornithine transcarbamylase 2243:Glycerol phosphate shuttle 2109:monoamine neurotransmitter 1993: 3953:Michaelis–Menten kinetics 2798: 2496: 2472: 2169:oxidative phosphorylation 1472:10.1016/j.jmb.2010.05.015 1364:10.1016/j.jmb.2006.11.085 597:oxidative phosphorylation 589:oxidative phosphorylation 490: 293: 212: 107: 26: 3845:Diffusion-limited enzyme 3698:protein-serine/threonine 3598:Phosphatidyltransferases 3187:Thiamine diphosphokinase 2360:Isocitrate dehydrogenase 2238:Malate-aspartate shuttle 1988:Medical Subject Headings 2407:Glutamate dehydrogenase 2194:Succinate dehydrogenase 1745:10.1073/pnas.93.12.5720 1422:10.1073/pnas.0906510106 1082:The Biochemical Journal 992:The Biochemical Journal 3518:Nucleotidyltransferase 3201:nucleotidyltransferase 3128:Nucleoside-diphosphate 2803:mitochondrial diseases 2402:Aspartate transaminase 2059:fatty acid degradation 1900:10.1074/jbc.M211465200 1796:10.1074/jbc.M705268200 891:Structural adaptations 873:sensorineural deafness 747: 728: 554:Substrate and products 550: 3938:Eadie–Hofstee diagram 3871:Allosteric regulation 3372:Reverse transcriptase 2516:Mitochondrial carrier 2392:anaplerotic reactions 2228:mitochondrial shuttle 2206:pyrimidine metabolism 1950:10.1104/pp.104.056143 1547:Nature Communications 842:that had a disrupted 745: 722: 544: 4098:Cellular respiration 3948:Lineweaver–Burk plot 3161:diphosphotransferase 3143:Thiamine-diphosphate 2850:-containing groups ( 2523:Translocator protein 2380:Malate dehydrogenase 2275:Aldosterone synthase 1624:10.3390/ijms10041729 913:Arabidopsis thaliana 905:Arabidopsis thaliana 877:Reticular dysgenesis 867:Adenylate Kinase 2 ( 796:Metabolic monitoring 3743:: protein-histidine 3661:; protein acceptor) 3549:mRNA capping enzyme 3541:Guanylyltransferase 2135:Intermembrane space 1736:1996PNAS...93.5720L 1677:2011PLoSO...619300D 1559:2010NatCo...1..111O 1413:2009PNAS..10616984S 1320:10.2210/pdb1ake/pdb 1225:10.1038/nature06410 1217:2007Natur.450..838H 834:deoxyribonucleoside 3907:Enzyme superfamily 3840:Enzyme promiscuity 3019:Phosphoinositide 3 2863:phosphotransferase 2490:Other/to be sorted 2455:alcohol metabolism 2315:Uncoupling protein 2189:NADH dehydrogenase 1568:10.1038/ncomms1106 1094:10.1042/BJ20101443 938:2016-11-09 at the 748: 729: 629:targeting sequence 551: 192:phosphotransferase 4063: 4062: 3772: 3771: 3768: 3767: 3644: 3643: 3583: 3582: 3484: 3483: 3397:Template-directed 3151: 3150: 3118:Phosphomevalonate 2810: 2809: 2794: 2793: 2537:Mitochondrial DNA 2531: 2530: 2485: 2484: 2340:citric acid cycle 2323: 2322: 2129: 2128: 2121:Monoamine oxidase 1520:10.1021/bi8018042 1004:10.1042/bj1520023 823:Disease relevance 626: 621: 539: 538: 535: 534: 454:metabolic pathway 356: 355: 352: 351: 347:structure summary 182:) (also known as 170: 169: 166: 165: 161:structure summary 4110: 4080: 4079: 4071: 3943:Hanes–Woolf plot 3886:Enzyme activator 3881:Enzyme inhibitor 3855:Enzyme catalysis 3799: 3792: 3785: 3776: 3760:Histidine kinase 3683:tyrosine kinases 3673:protein-tyrosine 3665: 3595: 3402:RNA polymerase I 3225: 3216: 3069:Aspartate kinase 3064:Phosphoglycerate 2881: 2837: 2830: 2823: 2814: 2674: 2649: 2619: 2599: 2549: 2542: 2494: 2457: 2427: 2395: 2350:Citrate synthase 2343: 2334: 2288: 2258: 2231: 2209: 2172: 2163: 2143:Adenylate kinase 2114: 2090: 2062: 2053: 2032: 2025: 2018: 2009: 1984:Adenylate+kinase 1972: 1971: 1961: 1938:Plant Physiology 1929: 1923: 1922: 1912: 1902: 1893:(15): 12937–45. 1878: 1872: 1871: 1861: 1828: 1819: 1818: 1808: 1798: 1789:(43): 31366–72. 1774: 1768: 1767: 1757: 1747: 1715: 1709: 1708: 1698: 1688: 1656: 1647: 1646: 1636: 1626: 1602: 1581: 1580: 1570: 1538: 1532: 1531: 1503: 1494: 1493: 1483: 1451: 1445: 1444: 1434: 1424: 1392: 1386: 1385: 1375: 1343: 1332: 1331: 1304:Escherichia coli 1299: 1290: 1289: 1279: 1258:Escherichia coli 1251: 1245: 1244: 1211:(7171): 838–44. 1199: 1190: 1189: 1161: 1155: 1154: 1144: 1120: 1114: 1113: 1079: 1070: 1064: 1063: 1035: 1026: 1025: 1015: 983: 977: 975: 965: 929: 881:immunodeficiency 839:Escherichia coli 624: 619: 609:protein isoforms 492: 361:Adenylate kinase 358: 295: 217: 205: 173:Adenylate kinase 109: 31: 22:Adenylate kinase 19: 16:Class of enzymes 4118: 4117: 4113: 4112: 4111: 4109: 4108: 4107: 4088: 4087: 4086: 4074: 4066: 4064: 4059: 3971:Oxidoreductases 3957: 3933:Enzyme kinetics 3921: 3917:List of enzymes 3890: 3859: 3830:Catalytic triad 3808: 3803: 3773: 3764: 3735: 3713: 3688: 3659: 3653: 3649:2.7.10-2.7.13: 3640: 3624: 3591:: miscellaneous 3579: 3553: 3535: 3512: 3495:exoribonuclease 3492: 3480: 3466:Polyadenylation 3383: 3209: 3203: 3191: 3173: 3169: 3163: 3147: 3109: 3096: 3073: 3045: 2875: 2869: 2861: 2855: 2841: 2811: 2806: 2790: 2670: 2665: 2645: 2640: 2615: 2610: 2595: 2590: 2545: 2527: 2481: 2468: 2453: 2448: 2421: 2416: 2389: 2384: 2337: 2319: 2284: 2279: 2255:steroidogenesis 2252: 2247: 2225: 2220: 2203: 2198: 2166: 2152: 2148:Creatine kinase 2125: 2111: 2106: 2101: 2083: 2078: 2056: 2042: 2036: 2006: 1980: 1975: 1931: 1930: 1926: 1880: 1879: 1875: 1838:Nature Genetics 1830: 1829: 1822: 1776: 1775: 1771: 1717: 1716: 1712: 1658: 1657: 1650: 1604: 1603: 1584: 1540: 1539: 1535: 1505: 1504: 1497: 1453: 1452: 1448: 1407:(40): 16984–9. 1394: 1393: 1389: 1345: 1344: 1335: 1301: 1300: 1293: 1270:(14): 8107–12. 1253: 1252: 1248: 1201: 1200: 1193: 1163: 1162: 1158: 1122: 1121: 1117: 1077: 1072: 1071: 1067: 1037: 1036: 1029: 985: 984: 980: 943: 940:Wayback Machine 930: 926: 922: 908: 893: 865: 863:ADK2 deficiency 852: 830: 825: 811: 798: 793: 785: 781: 777: 773: 769: 765: 761: 726: 723:Residues of ADK 717: 690: 641: 605: 556: 220: 34: 17: 12: 11: 5: 4116: 4114: 4106: 4105: 4100: 4090: 4089: 4085: 4084: 4061: 4060: 4058: 4057: 4044: 4031: 4018: 4005: 3992: 3979: 3965: 3963: 3959: 3958: 3956: 3955: 3950: 3945: 3940: 3935: 3929: 3927: 3923: 3922: 3920: 3919: 3914: 3909: 3904: 3898: 3896: 3895:Classification 3892: 3891: 3889: 3888: 3883: 3878: 3873: 3867: 3865: 3861: 3860: 3858: 3857: 3852: 3847: 3842: 3837: 3832: 3827: 3822: 3816: 3814: 3810: 3809: 3804: 3802: 3801: 3794: 3787: 3779: 3770: 3769: 3766: 3765: 3763: 3762: 3757: 3752: 3746: 3744: 3737: 3736: 3734: 3733: 3724: 3722: 3715: 3714: 3712: 3711: 3702: 3700: 3690: 3689: 3687: 3686: 3677: 3675: 3662: 3657: 3651:protein kinase 3646: 3645: 3642: 3641: 3639: 3638: 3632: 3630: 3626: 3625: 3623: 3622: 3617: 3612: 3607: 3601: 3599: 3592: 3585: 3584: 3581: 3580: 3578: 3577: 3572: 3561: 3559: 3555: 3554: 3552: 3551: 3545: 3543: 3537: 3536: 3534: 3533: 3528: 3522: 3520: 3514: 3513: 3511: 3510: 3505: 3499: 3497: 3490:Phosphorolytic 3486: 3485: 3482: 3481: 3479: 3478: 3473: 3468: 3463: 3458: 3457: 3456: 3451: 3446: 3436: 3435: 3434: 3424: 3419: 3414: 3409: 3404: 3399: 3393: 3391: 3389:RNA polymerase 3385: 3384: 3382: 3381: 3380: 3379: 3369: 3365: 3364: 3363: 3362: 3357: 3352: 3341: 3340: 3339: 3334: 3329: 3324: 3313: 3307: 3306: 3305: 3298: 3293: 3288: 3283: 3272: 3271: 3270: 3263: 3258: 3253: 3248: 3237: 3233: 3231: 3229:DNA polymerase 3222: 3213: 3207: 3193: 3192: 3190: 3189: 3184: 3178: 3176: 3171: 3167: 3153: 3152: 3149: 3148: 3146: 3145: 3140: 3135: 3130: 3125: 3120: 3114: 3112: 3107: 3098: 3097: 3095: 3094: 3088: 3086: 3075: 3074: 3072: 3071: 3066: 3060: 3058: 3047: 3046: 3044: 3043: 3038: 3033: 3032: 3031: 3026: 3016: 3014:Diacylglycerol 3011: 3006: 3001: 2996: 2991: 2986: 2981: 2976: 2975: 2974: 2964: 2959: 2954: 2953: 2952: 2947: 2942: 2937: 2932: 2925:Phosphofructo- 2922: 2917: 2916: 2915: 2905: 2900: 2894: 2892: 2878: 2873: 2857: 2856: 2842: 2840: 2839: 2832: 2825: 2817: 2808: 2807: 2799: 2796: 2795: 2792: 2791: 2789: 2788: 2783: 2778: 2773: 2768: 2763: 2758: 2753: 2748: 2743: 2738: 2733: 2728: 2723: 2718: 2713: 2708: 2703: 2698: 2693: 2688: 2683: 2677: 2675: 2667: 2666: 2664: 2663: 2658: 2652: 2650: 2642: 2641: 2639: 2638: 2633: 2628: 2622: 2620: 2612: 2611: 2609: 2608: 2602: 2600: 2592: 2591: 2589: 2588: 2583: 2578: 2573: 2568: 2563: 2558: 2552: 2550: 2539: 2533: 2532: 2529: 2528: 2526: 2525: 2520: 2519: 2518: 2513: 2503: 2497: 2491: 2487: 2486: 2483: 2482: 2480: 2479: 2473: 2470: 2469: 2467: 2466: 2460: 2458: 2450: 2449: 2447: 2446: 2441: 2436: 2430: 2428: 2418: 2417: 2415: 2414: 2409: 2404: 2398: 2396: 2386: 2385: 2383: 2382: 2377: 2372: 2367: 2362: 2357: 2352: 2346: 2344: 2331: 2325: 2324: 2321: 2320: 2318: 2317: 2312: 2307: 2302: 2297: 2291: 2289: 2281: 2280: 2278: 2277: 2272: 2267: 2261: 2259: 2249: 2248: 2246: 2245: 2240: 2234: 2232: 2222: 2221: 2219: 2218: 2212: 2210: 2200: 2199: 2197: 2196: 2191: 2186: 2181: 2175: 2173: 2160: 2158:Inner membrane 2154: 2153: 2151: 2150: 2145: 2139: 2137: 2131: 2130: 2127: 2126: 2124: 2123: 2117: 2115: 2103: 2102: 2100: 2099: 2093: 2091: 2080: 2079: 2077: 2076: 2071: 2065: 2063: 2050: 2048:Outer membrane 2044: 2043: 2037: 2035: 2034: 2027: 2020: 2012: 1992: 1991: 1979: 1978:External links 1976: 1974: 1973: 1924: 1873: 1850:10.1038/ng.278 1820: 1769: 1730:(12): 5720–5. 1710: 1648: 1617:(4): 1729–72. 1582: 1533: 1514:(9): 1911–27. 1495: 1446: 1387: 1358:(5): 1661–71. 1333: 1291: 1246: 1191: 1156: 1115: 1065: 1027: 978: 956:(16): 2874–7. 950:Bioinformatics 923: 921: 918: 907: 901: 892: 889: 864: 861: 851: 848: 829: 826: 824: 821: 816:bucket brigade 810: 807: 797: 794: 792: 789: 783: 779: 775: 771: 767: 763: 759: 724: 716: 713: 689: 686: 685: 684: 670: 659:UMP-CMP kinase 656: 640: 637: 604: 601: 587:. The rate of 555: 552: 537: 536: 533: 532: 527: 521: 520: 515: 509: 508: 503: 497: 496: 488: 487: 476: 469: 468: 463: 457: 456: 451: 445: 444: 439: 433: 432: 427: 421: 420: 415: 409: 408: 403: 397: 396: 392: 391: 386: 380: 379: 374: 368: 367: 363: 362: 354: 353: 350: 349: 344: 338: 337: 324: 318: 317: 307: 300: 299: 291: 290: 277: 271: 270: 265: 259: 258: 253: 247: 246: 241: 235: 234: 231: 227: 226: 222: 221: 218: 210: 209: 168: 167: 164: 163: 158: 152: 151: 138: 132: 131: 121: 114: 113: 105: 104: 91: 85: 84: 79: 73: 72: 67: 61: 60: 55: 49: 48: 45: 41: 40: 36: 35: 32: 24: 23: 15: 13: 10: 9: 6: 4: 3: 2: 4115: 4104: 4101: 4099: 4096: 4095: 4093: 4083: 4078: 4073: 4069: 4055: 4051: 4050: 4045: 4042: 4038: 4037: 4032: 4029: 4025: 4024: 4019: 4016: 4012: 4011: 4006: 4003: 3999: 3998: 3993: 3990: 3986: 3985: 3980: 3977: 3973: 3972: 3967: 3966: 3964: 3960: 3954: 3951: 3949: 3946: 3944: 3941: 3939: 3936: 3934: 3931: 3930: 3928: 3924: 3918: 3915: 3913: 3912:Enzyme family 3910: 3908: 3905: 3903: 3900: 3899: 3897: 3893: 3887: 3884: 3882: 3879: 3877: 3876:Cooperativity 3874: 3872: 3869: 3868: 3866: 3862: 3856: 3853: 3851: 3848: 3846: 3843: 3841: 3838: 3836: 3835:Oxyanion hole 3833: 3831: 3828: 3826: 3823: 3821: 3818: 3817: 3815: 3811: 3807: 3800: 3795: 3793: 3788: 3786: 3781: 3780: 3777: 3761: 3758: 3756: 3753: 3751: 3748: 3747: 3745: 3742: 3738: 3732: 3731: 3726: 3725: 3723: 3720: 3716: 3710: 3709: 3704: 3703: 3701: 3699: 3695: 3691: 3685: 3684: 3679: 3678: 3676: 3674: 3670: 3666: 3663: 3660: 3652: 3647: 3637: 3634: 3633: 3631: 3627: 3621: 3618: 3616: 3613: 3611: 3608: 3606: 3603: 3602: 3600: 3596: 3593: 3590: 3586: 3576: 3573: 3570: 3566: 3563: 3562: 3560: 3556: 3550: 3547: 3546: 3544: 3542: 3538: 3532: 3529: 3527: 3524: 3523: 3521: 3519: 3515: 3509: 3506: 3504: 3501: 3500: 3498: 3496: 3491: 3487: 3477: 3474: 3472: 3469: 3467: 3464: 3462: 3459: 3455: 3452: 3450: 3447: 3445: 3442: 3441: 3440: 3437: 3433: 3430: 3429: 3428: 3425: 3423: 3420: 3418: 3415: 3413: 3410: 3408: 3405: 3403: 3400: 3398: 3395: 3394: 3392: 3390: 3386: 3378: 3375: 3374: 3373: 3370: 3367: 3366: 3361: 3358: 3356: 3353: 3351: 3348: 3347: 3345: 3342: 3338: 3335: 3333: 3330: 3328: 3325: 3323: 3320: 3319: 3317: 3314: 3311: 3308: 3304: 3303: 3299: 3297: 3294: 3292: 3289: 3287: 3284: 3282: 3279: 3278: 3276: 3273: 3269: 3268: 3264: 3262: 3259: 3257: 3254: 3252: 3249: 3247: 3244: 3243: 3241: 3238: 3235: 3234: 3232: 3230: 3226: 3223: 3221: 3217: 3214: 3211: 3202: 3198: 3194: 3188: 3185: 3183: 3180: 3179: 3177: 3174: 3162: 3158: 3154: 3144: 3141: 3139: 3136: 3134: 3131: 3129: 3126: 3124: 3121: 3119: 3116: 3115: 3113: 3110: 3103: 3099: 3093: 3090: 3089: 3087: 3084: 3080: 3076: 3070: 3067: 3065: 3062: 3061: 3059: 3056: 3052: 3048: 3042: 3039: 3037: 3034: 3030: 3029:Class II PI 3 3027: 3025: 3022: 3021: 3020: 3017: 3015: 3012: 3010: 3007: 3005: 3004:Deoxycytidine 3002: 3000: 2997: 2995: 2992: 2990: 2987: 2985: 2982: 2980: 2977: 2973: 2972:ADP-thymidine 2970: 2969: 2968: 2965: 2963: 2960: 2958: 2955: 2951: 2948: 2946: 2943: 2941: 2938: 2936: 2933: 2931: 2928: 2927: 2926: 2923: 2921: 2918: 2914: 2911: 2910: 2909: 2906: 2904: 2901: 2899: 2896: 2895: 2893: 2890: 2886: 2882: 2879: 2876: 2868: 2864: 2858: 2853: 2849: 2845: 2838: 2833: 2831: 2826: 2824: 2819: 2818: 2815: 2805: 2804: 2797: 2787: 2784: 2782: 2779: 2777: 2774: 2772: 2769: 2767: 2764: 2762: 2759: 2757: 2754: 2752: 2749: 2747: 2744: 2742: 2739: 2737: 2734: 2732: 2729: 2727: 2724: 2722: 2719: 2717: 2714: 2712: 2709: 2707: 2704: 2702: 2699: 2697: 2694: 2692: 2689: 2687: 2684: 2682: 2679: 2678: 2676: 2673: 2668: 2662: 2659: 2657: 2654: 2653: 2651: 2648: 2643: 2637: 2634: 2632: 2629: 2627: 2624: 2623: 2621: 2618: 2613: 2607: 2604: 2603: 2601: 2598: 2593: 2587: 2584: 2582: 2579: 2577: 2574: 2572: 2569: 2567: 2564: 2562: 2559: 2557: 2554: 2553: 2551: 2548: 2543: 2540: 2538: 2534: 2524: 2521: 2517: 2514: 2512: 2509: 2508: 2507: 2504: 2502: 2499: 2498: 2495: 2492: 2488: 2478: 2475: 2474: 2471: 2465: 2462: 2461: 2459: 2456: 2451: 2445: 2442: 2440: 2437: 2435: 2432: 2431: 2429: 2426: 2425: 2419: 2413: 2410: 2408: 2405: 2403: 2400: 2399: 2397: 2394: 2393: 2387: 2381: 2378: 2376: 2373: 2371: 2368: 2366: 2363: 2361: 2358: 2356: 2353: 2351: 2348: 2347: 2345: 2342: 2341: 2335: 2332: 2330: 2326: 2316: 2313: 2311: 2308: 2306: 2303: 2301: 2298: 2296: 2293: 2292: 2290: 2287: 2282: 2276: 2273: 2271: 2268: 2266: 2263: 2262: 2260: 2257: 2256: 2250: 2244: 2241: 2239: 2236: 2235: 2233: 2230: 2229: 2223: 2217: 2214: 2213: 2211: 2208: 2207: 2201: 2195: 2192: 2190: 2187: 2185: 2182: 2180: 2177: 2176: 2174: 2171: 2170: 2164: 2161: 2159: 2155: 2149: 2146: 2144: 2141: 2140: 2138: 2136: 2132: 2122: 2119: 2118: 2116: 2113: 2110: 2104: 2098: 2095: 2094: 2092: 2089: 2087: 2081: 2075: 2072: 2070: 2067: 2066: 2064: 2061: 2060: 2054: 2051: 2049: 2045: 2040: 2039:Mitochondrial 2033: 2028: 2026: 2021: 2019: 2014: 2013: 2010: 2005: 2001: 1997: 1989: 1985: 1982: 1981: 1977: 1969: 1965: 1960: 1955: 1951: 1947: 1943: 1939: 1935: 1928: 1925: 1920: 1916: 1911: 1906: 1901: 1896: 1892: 1888: 1884: 1877: 1874: 1869: 1865: 1860: 1855: 1851: 1847: 1844:(1): 106–11. 1843: 1839: 1835: 1827: 1825: 1821: 1816: 1812: 1807: 1802: 1797: 1792: 1788: 1784: 1780: 1773: 1770: 1765: 1761: 1756: 1751: 1746: 1741: 1737: 1733: 1729: 1725: 1721: 1714: 1711: 1706: 1702: 1697: 1692: 1687: 1682: 1678: 1674: 1671:(4): e19300. 1670: 1666: 1662: 1655: 1653: 1649: 1644: 1640: 1635: 1630: 1625: 1620: 1616: 1612: 1608: 1601: 1599: 1597: 1595: 1593: 1591: 1589: 1587: 1583: 1578: 1574: 1569: 1564: 1560: 1556: 1552: 1548: 1544: 1537: 1534: 1529: 1525: 1521: 1517: 1513: 1509: 1502: 1500: 1496: 1491: 1487: 1482: 1477: 1473: 1469: 1466:(3): 618–31. 1465: 1461: 1457: 1450: 1447: 1442: 1438: 1433: 1428: 1423: 1418: 1414: 1410: 1406: 1402: 1398: 1391: 1388: 1383: 1379: 1374: 1369: 1365: 1361: 1357: 1353: 1349: 1342: 1340: 1338: 1334: 1329: 1325: 1321: 1317: 1314:(1): 159–77. 1313: 1309: 1305: 1298: 1296: 1292: 1287: 1283: 1278: 1273: 1269: 1265: 1261: 1259: 1250: 1247: 1242: 1238: 1234: 1230: 1226: 1222: 1218: 1214: 1210: 1206: 1198: 1196: 1192: 1187: 1183: 1179: 1175: 1171: 1167: 1160: 1157: 1152: 1148: 1143: 1138: 1134: 1130: 1126: 1119: 1116: 1111: 1107: 1103: 1099: 1095: 1091: 1088:(3): 527–34. 1087: 1083: 1076: 1069: 1066: 1061: 1057: 1053: 1049: 1045: 1041: 1034: 1032: 1028: 1023: 1019: 1014: 1009: 1005: 1001: 997: 993: 989: 982: 979: 973: 969: 964: 959: 955: 951: 947: 941: 937: 934: 928: 925: 919: 917: 915: 914: 906: 902: 900: 898: 890: 888: 886: 882: 878: 874: 870: 862: 860: 858: 849: 847: 845: 841: 840: 835: 827: 822: 820: 817: 808: 806: 804: 795: 790: 788: 756: 754: 744: 740: 738: 734: 721: 714: 712: 709: 705: 701: 696: 687: 683: 682: 677: 674: 671: 669: 668: 663: 660: 657: 655: 654: 649: 646: 643: 642: 638: 636: 632: 630: 622: 614: 610: 602: 600: 598: 594: 590: 586: 582: 578: 572: 571: 567: 563: 559: 553: 548: 543: 531: 528: 526: 522: 519: 516: 514: 510: 507: 504: 502: 498: 493: 489: 486: 483: 480: 477: 474: 470: 467: 464: 462: 458: 455: 452: 450: 446: 443: 440: 438: 434: 431: 430:NiceZyme view 428: 426: 422: 419: 416: 414: 410: 407: 404: 402: 398: 393: 390: 387: 385: 381: 378: 375: 373: 369: 364: 359: 348: 345: 343: 339: 336: 332: 328: 325: 323: 319: 315: 311: 308: 305: 301: 296: 292: 289: 285: 281: 278: 276: 272: 269: 266: 264: 260: 257: 254: 252: 248: 245: 242: 240: 236: 232: 228: 223: 216: 211: 206: 203: 201: 196: 193: 189: 185: 181: 178: 174: 162: 159: 157: 153: 150: 146: 142: 139: 137: 133: 129: 125: 122: 119: 115: 110: 106: 103: 99: 95: 92: 90: 86: 83: 80: 78: 74: 71: 68: 66: 62: 59: 56: 54: 50: 46: 42: 37: 30: 25: 20: 4049:Translocases 4046: 4033: 4020: 4007: 3994: 3984:Transferases 3981: 3968: 3825:Binding site 3727: 3705: 3680: 3301: 3266: 3122: 3024:Class I PI 3 2989:Pantothenate 2860:2.7.1-2.7.4: 2844:Transferases 2800: 2647:ATP synthase 2454: 2422: 2390: 2338: 2305:ATP synthase 2285: 2253: 2226: 2204: 2184:Cytochrome c 2167: 2142: 2107: 2097:Kynureninase 2084: 2057: 1944:(1): 70–82. 1941: 1937: 1927: 1890: 1886: 1876: 1841: 1837: 1786: 1782: 1772: 1727: 1723: 1713: 1668: 1664: 1614: 1610: 1550: 1546: 1536: 1511: 1508:Biochemistry 1507: 1463: 1459: 1449: 1404: 1400: 1390: 1355: 1351: 1311: 1307: 1303: 1267: 1263: 1257: 1249: 1208: 1204: 1172:(1): 145–8. 1169: 1165: 1159: 1135:(2): 263–7. 1132: 1128: 1118: 1085: 1081: 1068: 1043: 1039: 998:(1): 23–32. 995: 991: 981: 953: 949: 927: 911: 909: 904: 894: 866: 853: 837: 831: 812: 799: 757: 749: 730: 703: 694: 691: 679: 665: 651: 633: 606: 573: 560: 557: 546: 418:BRENDA entry 187: 183: 172: 171: 3820:Active site 3575:Transposase 3565:Recombinase 3210:-nucleoside 3036:Sphingosine 2597:Complex III 1910:2066/186091 809:ADK shuttle 639:Subfamilies 406:IntEnz view 366:Identifiers 225:Identifiers 200:homeostasis 39:Identifiers 4092:Categories 4023:Isomerases 3997:Hydrolases 3864:Regulation 3377:Telomerase 3220:Polymerase 2994:Mevalonate 2957:Riboflavin 2848:phosphorus 2617:Complex IV 2424:urea cycle 2112:metabolism 2088:metabolism 2086:tryptophan 1553:(8): 111. 920:References 897:glycolysis 475:structures 442:KEGG entry 310:structures 124:structures 3902:EC number 3569:Integrase 3493:3' to 5' 3138:Guanylate 3133:Uridylate 3123:Adenylate 2967:Thymidine 2962:Shikimate 2801:see also 2547:Complex I 2355:Aconitase 2004:IPR000850 1046:: 75–83. 885:inner ear 737:oligomers 715:Structure 700:conserved 688:Mechanism 681:IPR006267 667:IPR006266 653:IPR006259 395:Databases 268:PDOC00104 256:IPR007862 188:myokinase 82:PDOC00104 70:IPR000850 4103:EC 2.7.4 3926:Kinetics 3850:Cofactor 3813:Activity 3503:RNase PH 3111:acceptor 3092:Creatine 3085:acceptor 3057:acceptor 2999:Pyruvate 2984:Glycerol 2945:Platelet 2920:Galacto- 2891:acceptor 2501:Frataxin 2375:Fumarase 2041:proteins 2000:InterPro 1968:15618410 1919:12562761 1868:19043416 1815:17704060 1705:21556322 1665:PLOS ONE 1643:19468337 1577:21081909 1528:19219996 1490:20471396 1441:19805185 1382:17217965 1233:18026086 1110:33249169 1102:21080915 1060:24495878 972:15145806 936:Archived 857:coronary 791:Function 708:cofactor 676:InterPro 662:InterPro 648:InterPro 603:Isozymes 530:proteins 518:articles 506:articles 479:RCSB PDB 389:2598011 327:RCSB PDB 251:InterPro 141:RCSB PDB 65:InterPro 4082:Biology 4036:Ligases 3806:Enzymes 3454:PrimPol 3439:Primase 2913:Hepatic 2908:Fructo- 2661:MT-ATP8 2656:MT-ATP6 2576:MT-ND4L 1859:2612090 1806:3232003 1764:8650159 1732:Bibcode 1696:3083437 1673:Bibcode 1634:2680645 1555:Bibcode 1481:2902635 1432:2761315 1409:Bibcode 1373:2561047 1328:1548697 1286:2542263 1241:4406037 1213:Bibcode 1186:1587477 1022:1212224 1013:1172435 782:and AMP 774:and AMP 768:E. coli 762:and AMP 735:, form 733:ligands 725:E. coli 704:E. coli 695:E. coli 678::  664::  650::  613:cytosol 547:E. coli 466:profile 449:MetaCyc 384:CAS no. 377:2.7.4.3 263:PROSITE 244:PF05191 233:ADK_lid 208:ADK_lid 190:) is a 180:2.7.4.3 77:PROSITE 58:PF00406 4068:Portal 4010:Lyases 3741:2.7.13 3719:2.7.12 3694:2.7.11 3669:2.7.10 3508:PNPase 3476:PNPase 3432:POLRMT 3427:ssRNAP 2940:Muscle 2903:Gluco- 2867:kinase 2766:MT-TS2 2761:MT-TS1 2731:MT-TL2 2726:MT-TL1 2636:MT-CO3 2631:MT-CO2 2626:MT-CO1 2606:MT-CYB 2586:MT-ND6 2581:MT-ND5 2571:MT-ND4 2566:MT-ND3 2561:MT-ND2 2556:MT-ND1 2329:Matrix 1990:(MeSH) 1966:  1959:548839 1956:  1917:  1866:  1856:  1813:  1803:  1762:  1752:  1703:  1693:  1641:  1631:  1575:  1526:  1488:  1478:  1439:  1429:  1380:  1370:  1326:  1284:  1239:  1231:  1205:Nature 1184:  1151:218813 1149:  1108:  1100:  1058:  1020:  1010:  970:  753:strain 513:PubMed 495:Search 485:PDBsum 425:ExPASy 413:BRENDA 401:IntEnz 372:EC no. 342:PDBsum 316:  306:  288:SUPFAM 230:Symbol 195:enzyme 156:PDBsum 130:  120:  102:SUPFAM 44:Symbol 3962:Types 3589:2.7.8 3558:Other 3197:2.7.7 3157:2.7.6 3102:2.7.4 3079:2.7.3 3051:2.7.2 2935:Liver 2898:Hexo- 2885:2.7.1 2786:MT-TY 2781:MT-TW 2776:MT-TV 2771:MT-TT 2756:MT-TR 2751:MT-TQ 2746:MT-TP 2741:MT-TN 2736:MT-TM 2721:MT-TK 2716:MT-TI 2711:MT-TH 2706:MT-TG 2701:MT-TF 2696:MT-TE 2691:MT-TD 2686:MT-TC 2681:MT-TA 2477:PMPCB 2464:ALDH2 2286:other 1755:39127 1237:S2CID 1106:S2CID 1078:(PDF) 461:PRIAM 284:SCOPe 275:SCOP2 98:SCOPe 89:SCOP2 4054:list 4047:EC7 4041:list 4034:EC6 4028:list 4021:EC5 4015:list 4008:EC4 4002:list 3995:EC3 3989:list 3982:EC2 3976:list 3969:EC1 3728:see 3706:see 3681:see 3055:COOH 2854:2.7) 2672:tRNA 1998:and 1996:Pfam 1964:PMID 1915:PMID 1864:PMID 1811:PMID 1760:PMID 1701:PMID 1639:PMID 1573:PMID 1524:PMID 1486:PMID 1437:PMID 1378:PMID 1324:PMID 1282:PMID 1229:PMID 1182:PMID 1166:Gene 1147:PMID 1098:PMID 1056:PMID 1018:PMID 968:PMID 803:AMPK 568:⇔ 2 525:NCBI 482:PDBe 437:KEGG 335:PDBj 331:PDBe 314:ECOD 304:Pfam 280:1ake 239:Pfam 149:PDBj 145:PDBe 128:ECOD 118:Pfam 94:1ake 53:Pfam 3471:PAP 3412:III 3346:/Y 3337:TDT 3318:/X 3310:III 3302:Pfu 3277:/B 3267:Taq 3242:/A 3009:PFP 2979:NAD 1954:PMC 1946:doi 1942:137 1905:hdl 1895:doi 1891:278 1854:PMC 1846:doi 1801:PMC 1791:doi 1787:282 1750:PMC 1740:doi 1691:PMC 1681:doi 1629:PMC 1619:doi 1563:doi 1516:doi 1476:PMC 1468:doi 1464:400 1427:PMC 1417:doi 1405:106 1368:PMC 1360:doi 1356:366 1316:doi 1312:224 1272:doi 1268:264 1221:doi 1209:450 1174:doi 1170:114 1137:doi 1090:doi 1086:433 1048:doi 1008:PMC 1000:doi 996:152 958:doi 875:. 869:AK2 784:lid 780:lid 776:lid 772:lid 764:lid 760:lid 593:ATP 585:AMP 581:ADP 577:ATP 570:ADP 566:AMP 562:ATP 501:PMC 473:PDB 322:PDB 186:or 184:ADK 136:PDB 47:ADK 4094:: 3696:: 3671:: 3656:PO 3417:IV 3407:II 3316:IV 3312:/C 3275:II 3261:T7 3206:PO 3199:: 3159:: 3106:PO 3104:: 3081:: 3053:: 2889:OH 2887:: 2872:PO 2852:EC 2846:: 2002:: 1962:. 1952:. 1940:. 1936:. 1913:. 1903:. 1889:. 1885:. 1862:. 1852:. 1842:41 1840:. 1836:. 1823:^ 1809:. 1799:. 1785:. 1781:. 1758:. 1748:. 1738:. 1728:93 1726:. 1722:. 1699:. 1689:. 1679:. 1667:. 1663:. 1651:^ 1637:. 1627:. 1615:10 1613:. 1609:. 1585:^ 1571:. 1561:. 1549:. 1545:. 1522:. 1512:48 1510:. 1498:^ 1484:. 1474:. 1462:. 1458:. 1435:. 1425:. 1415:. 1403:. 1399:. 1376:. 1366:. 1354:. 1350:. 1336:^ 1322:. 1310:. 1294:^ 1280:. 1266:. 1262:. 1235:. 1227:. 1219:. 1207:. 1194:^ 1180:. 1168:. 1145:. 1133:93 1131:. 1127:. 1104:. 1096:. 1084:. 1080:. 1054:. 1044:49 1042:. 1030:^ 1016:. 1006:. 994:. 990:. 966:. 954:20 952:. 948:. 942:, 916:. 599:. 564:+ 333:; 329:; 312:/ 286:/ 282:/ 177:EC 147:; 143:; 126:/ 100:/ 96:/ 4070:: 4056:) 4052:( 4043:) 4039:( 4030:) 4026:( 4017:) 4013:( 4004:) 4000:( 3991:) 3987:( 3978:) 3974:( 3798:e 3791:t 3784:v 3658:4 3654:( 3571:) 3567:( 3449:2 3444:1 3422:V 3360:Îş 3355:Îą 3350:η 3344:V 3332:ÎĽ 3327:λ 3322:β 3296:ζ 3291:ε 3286:δ 3281:α 3256:ν 3251:θ 3246:Îł 3240:I 3212:) 3208:4 3204:( 3175:) 3172:7 3170:O 3168:2 3166:P 3164:( 3108:4 3083:N 2950:2 2930:1 2877:) 2874:4 2870:( 2865:/ 2836:e 2829:t 2822:v 2031:e 2024:t 2017:v 1970:. 1948:: 1921:. 1907:: 1897:: 1870:. 1848:: 1817:. 1793:: 1766:. 1742:: 1734:: 1707:. 1683:: 1675:: 1669:6 1645:. 1621:: 1579:. 1565:: 1557:: 1551:1 1530:. 1518:: 1492:. 1470:: 1443:. 1419:: 1411:: 1384:. 1362:: 1330:. 1318:: 1288:. 1274:: 1243:. 1223:: 1215:: 1188:. 1176:: 1153:. 1139:: 1112:. 1092:: 1062:. 1050:: 1024:. 1002:: 974:. 960:: 625:m 620:m 618:K 202:. 175:(

Index


Pfam
PF00406
InterPro
IPR000850
PROSITE
PDOC00104
SCOP2
1ake
SCOPe
SUPFAM
Pfam
structures
ECOD
PDB
RCSB PDB
PDBe
PDBj
PDBsum
structure summary
EC
2.7.4.3
phosphotransferase
enzyme
homeostasis

Pfam
PF05191
InterPro
IPR007862

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