31:
54:
314:
flexible virions with an envelope, and they contain an additional protein sheath layer between the nucleoprotein complex and the envelope. Rudviruses have stiff, rod-like virions about 600β900 by 23 nm. At both ends of the virion, lipothrixviruses have mop- or claw-like structures connected to a collar, whereas rudiviruses and tristromaviruses have plugs at each end from which bundles of thin filaments emanate.
1339:
496:
466:
began to be discovered in the 1980s by
Wolfram Zillig and his colleagues. To discover these viruses, Zillig developed the methods used to culture their hosts. The first of these to be described were TTV1, TTV2, and TTV3 in 1983. TTV1 was classified as the first lipothrixvirus but is now classified as
270:
infect hyperthermophilic archaea and have linear, double-stranded DNA (dsDNA) genomes ranging from about 16 to 56 kilobase pairs in length. The ends of their genomes contain inverted terminal repeats. Notably, their genomes exist in A-form, also called A-DNA. A-form is proposed to be an adaptation
313:
Adnaviruses have filamentous virions, i.e. they are long, thin, and cylindrical. Lipothrixviruses have flexible virions about 900 nanometers (nm) in length and 24 nm in width in which the nucleoprotein helix is surrounded by a lipid envelope. Tristromaviruses, about 400 by 32 nm, likewise have
326:
have potentially existed for a long time, as it is thought that they may have infected the last archaeal common ancestor. In general, they show no genetic relation to viruses outside the realm. The only genes that are shared with other viruses are
1371:
479:
in 2012 based on evidence of their relation. Cryogenic electron microscopy would later show in 2020 that the MCPs of tristromaviruses contained a SIRV2-like fold like ligamenviruses, providing justification for establishing
286:
The creation of genomic A-DNA is caused by an interaction with major capsid protein (MCP) dimers, which, during virion assembly, cover pre-genomic B-DNA to form a helical nucleoprotein complex containing genomic A-DNA.
1364:
197:
have potentially existed for a long time, as it is thought that they may have infected the last archaeal common ancestor. In general, they show no genetic relation to any viruses outside the realm.
1357:
733:
Krupovic, Mart; Kuhn, Jens H.; Wang, Fengbin; Baquero, Diana P.; Dolja, Valerian V.; Egelman, Edward H.; Prangishvili, David; Koonin, Eugene V. (2021-07-12). Sandri-Goldin, Rozanne M. (ed.).
1130:
Janekovic D, Wunderl S, Holz I, Zillig W, Gierl A, Neumann H (1983). "TTV1, TTV2 and TTV3, a family of viruses of the extremely thermophilic, anaerobic, sulfur reducing archaebacterium
175:. Some contain an additional protein layer between the nucleoprotein helix and the envelope. Complete virions are long and thin and may be flexible or a stiff like a rod.
193:, i.e. archaea that inhabit very high temperature environments such as hot springs. Their A-DNA genome may be an adaptation to this extreme environment. Viruses in
306:
contain a folded structure consisting of a type of alpha-helix bundle that contains four helices called the SIRV2 fold, named after the virus of the same name,
339:
proteins. Adnaviruses are morphologically similar to non-archaeal filamentous viruses but their virions are built from different capsid proteins. Viruses of
1927:
345:, a family of filamentous archaeal viruses morphologically similar to adnaviruses, likewise possess MCPs that show no relation to the MCPs of viruses in
307:
629:
993:
656:
1197:"A novel virus family, the Rudiviridae: Structure, virus-host interactions and genome variability of the sulfolobus viruses SIRV1 and SIRV2"
1860:
1917:
467:
a tristromavirus. SIRV2, a rudivirus, became a model for studying virus-host interactions after its discovery in 1998. The families
283:
domain. Furthermore, Adnaviria viruses have high genome redundancy, an adaptation mechanism to survive such extreme environments.
30:
1922:
1845:
1833:
182:
39:
53:
185:
showed that the viruses in the realm were related due to a shared MCP, A-DNA, and general virion structure. Viruses in
684:
155:
that have a filamentous virion (i.e. body) and a linear, double-stranded DNA genome. The genome exists in A-form (
1989:
532:
Krupovic, M; Kuhn, JH; Wang, F; Baquero, DP; Dolja, VV; Egelman, EH; Prangishvili, D; Koonin, EV (12 July 2021).
509:
310:(SIRV2). Variations in the protein structure exist, but the same base structure is retained in all adnaviruses.
1850:
735:"Adnaviria : a New Realm for Archaeal Filamentous Viruses with Linear A-Form Double-Stranded DNA Genomes"
1939:
900:
1271:
1994:
1494:
1343:
1949:
1349:
423:
332:
48:
221:
1524:
328:
239:, meaning "rod", referring to the morphology of viruses in the realm, and the virus phylum suffix -
212:-, from A-DNA, referring to the A-form genomic DNA of all viruses in the realm. The second part, -
167:
proteins to form a helical nucleoprotein complex. For some viruses, this helix is surrounded by a
1818:
1740:
1308:
1244:
1169:
1151:
1024:
715:
595:
594:
Krupovic M, Kuhn JH, Wang F, Baquero DP, Egelman EH, Koonin EV, Prangishvili D (31 July 2020).
1796:
1712:
1614:
1384:
1226:
1086:
1016:
974:
881:
829:
811:
772:
754:
707:
567:
538:: a new realm for archaeal filamentous viruses with linear A-form double-stranded DNA genomes"
248:
1195:
Prangishvili D, Arnold HP, Gotz D, Ziese U, Holz I, Kristjansson JK, Zillig W (August 1999).
850:
Wang F, Baquero DP, Su Z, Osinski T, Prangishvili D, Egelman EH, Krupovic M (29 April 2020).
1216:
1208:
1143:
1076:
1008:
964:
954:
871:
863:
819:
803:
762:
746:
699:
557:
549:
299:
295:
272:
144:
159:) and encodes a dimeric major capsid protein (MCP) that contains the SIRV2 fold, a type of
1656:
439:
224:(1925β2005) for his research on hyperthermophilic archaea, with the virus kingdom suffix -
941:
Lawrence CM, Menon S, Eilers BJ, Bothner B, Khayat R, Douglas T, Young MJ (8 May 2009).
852:"Structure of a filamentous virus uncovers familial ties within the archaeal virosphere"
1705:
1670:
1663:
1642:
1621:
1598:
1478:
1221:
1196:
969:
942:
876:
851:
824:
791:
767:
734:
562:
533:
501:
414:
394:
172:
152:
1983:
1944:
1904:
1872:
1765:
1733:
1719:
1698:
1684:
1635:
1628:
1547:
1420:
1028:
1155:
1105:
719:
1961:
1894:
1758:
1726:
1691:
1677:
1649:
1575:
1554:
434:
399:
341:
1212:
807:
1823:
1568:
1081:
1068:
790:
Silva, Jorge Miguel; Pratas, Diogo; Caetano, TΓ’nia; Matos, SΓ©rgio (2022-08-11).
291:
160:
600:) for classification of filamentous archaeal viruses with linear dsDNA genomes"
1954:
1901:
1488:
1401:
1012:
491:
276:
815:
758:
163:
bundle containing four helices. The virion consists of the genome encased in
1561:
1442:
1230:
1090:
1020:
978:
959:
885:
833:
776:
711:
571:
1338:
1934:
1879:
1466:
1450:
1415:
867:
750:
703:
553:
290:
The nucleoprotein helix is composed of asymmetric units of two MCPs. For
1966:
1884:
1865:
1425:
1410:
1147:
280:
190:
495:
1912:
1855:
1840:
1790:
1520:
336:
271:
allowing DNA survival under extreme conditions since their hosts are
164:
216:
is the suffix used for virus realms. The sole kingdom in the realm,
1045:. International Committee on Taxonomy of Viruses (ICTV). March 2021
683:
Prangishvili D, Rensen E, Mochizuki T, Krupovic M (February 2019).
1889:
1516:
1460:
1455:
254:(αααα), meaning "thread", and the suffix used for virus classes, -
233:
168:
156:
148:
65:
302:, it is a heterodimer of paralogous MCPs. The MCPs of viruses in
1828:
1432:
1380:
1353:
1042:
364:, which has three orders. This taxonomy is shown hereafter:
1069:"40 Years of archaeal virology: Expanding viral diversity"
438:, which contains viruses that infect archaea of the order
398:, which contains viruses that infect archaea of the order
1315:. International Committee on Taxonomy of Viruses (ICTV)
1289:. International Committee on Taxonomy of Viruses (ICTV)
1251:. International Committee on Taxonomy of Viruses (ICTV)
1176:. International Committee on Taxonomy of Viruses (ICTV)
943:"Structural and functional studies of archaeal viruses"
922:. International Committee on Taxonomy of Viruses (ICTV)
659:. International Committee on Taxonomy of Viruses (ICTV)
632:. International Committee on Taxonomy of Viruses (ICTV)
605:. International Committee on Taxonomy of Viruses (ICTV)
418:, which contains viruses that infect archaea of the
1809:
1783:
1750:
1606:
1592:
1585:
1532:
1515:
1508:
1476:
1441:
1399:
1392:
678:
676:
674:
624:
622:
620:
992:Krupovic M, Dolja VV, Koonin EV (November 2020).
360:is monotypic down to the rank of its sole class,
349:and for that reason are excluded from the realm.
1365:
651:
649:
647:
8:
1928:Reverse transcriptase-related cellular gene
1270:Prangishvili D, Krupovic M (21 June 2012).
792:"The complexity landscape of viral genomes"
527:
525:
1589:
1529:
1512:
1396:
1372:
1358:
1350:
1067:Snyder JC, Buldoc B, Young MJ (May 2015).
589:
587:
585:
583:
581:
426:, currently containing the single species
29:
18:
1220:
1080:
1062:
1060:
968:
958:
875:
823:
766:
685:"ICTV Taxonomy Profile: Tristromaviridae"
561:
308:Sulfolobus islandicus rod-shaped virus 2
1909:Retroelements not elsewhere classified
899:Prangshvili D, Krupovic M (July 2016).
521:
243:. Lastly, the sole class in the realm,
845:
843:
7:
1861:Integrative and conjugative element
294:, this is a homodimer, whereas for
129:
208:takes the first part of its name,
14:
1918:Diversity-generating retroelement
994:"The LUCA and its complex virome"
475:were then united under the order
1923:Telomerase reverse transcriptase
1495:Microbes with highly unusual DNA
1337:
494:
52:
228:. The name of the sole phylum,
1846:Defective interfering particle
1043:"Virus Taxonomy: 2022 Release"
181:was established in 2020 after
1:
1834:Clonally transmissible cancer
183:cryogenic electron microscopy
40:Acidianus filamentous virus 3
1387:, and comparable structures
1213:10.1093/genetics/152.4.1387
1111:. Portland State University
1082:10.1016/j.virol.2015.03.031
808:10.1093/gigascience/giac079
2011:
428:Yumkaaxvirus pescaderoense
402:, containing the families
1013:10.1038/s41579-020-0408-x
510:List of higher virus taxa
189:infect hyperthermophilic
127:
122:
47:
37:
28:
21:
1851:Endogenous viral element
1309:"ICTV Taxonomy history:
1276:containing the families
1245:"ICTV Taxonomy history:
1170:"ICTV Taxonomy history:
442:, containing the family
279:microorganisms from the
1172:Betatristromavirus TTV1
596:"Create one new realm (
960:10.1074/jbc.R800078200
905:within the new family
247:, is constructed from
333:transcription factors
331:, ribbon-helix-helix
1950:Transposable element
1940:Spiegelman's Monster
1346:at Wikimedia Commons
1106:"Wolfram ASM Letter"
1075:. 479β480: 369β378.
751:10.1128/JVI.00673-21
704:10.1099/jgv.0.001190
554:10.1128/JVI.00673-21
329:glycosyltransferases
49:Virus classification
1132:Thermoproteus tenax
953:(19): 12599β12603.
911:Alphalipothrixvirus
903:Alphatristromavirus
739:Journal of Virology
542:Journal of Virology
171:membrane called an
1819:Bio-like structure
1741:Tolecusatellitidae
1272:"Create the order
1148:10.1007/BF00327644
868:10.1093/ve/veaa023
630:"Lipothrixviridae"
484:in the same year.
232:, is derived from
1975:
1974:
1805:
1804:
1779:
1778:
1775:
1774:
1713:Portogloboviridae
1615:Alphasatellitidae
1509:Non-cellular life
1504:
1503:
1385:non-cellular life
1342:Media related to
1001:Nat Rev Microbiol
909:and remove genus
745:(15): e00673β21.
273:hyperthermophilic
220:, is named after
136:
135:
2002:
1990:Archaeal viruses
1590:
1530:
1513:
1397:
1374:
1367:
1360:
1351:
1341:
1325:
1324:
1322:
1320:
1305:
1299:
1298:
1296:
1294:
1288:
1282:Lipothrixviridae
1267:
1261:
1260:
1258:
1256:
1241:
1235:
1234:
1224:
1207:(4): 1387β1396.
1192:
1186:
1185:
1183:
1181:
1166:
1160:
1159:
1127:
1121:
1120:
1118:
1116:
1110:
1101:
1095:
1094:
1084:
1064:
1055:
1054:
1052:
1050:
1039:
1033:
1032:
998:
989:
983:
982:
972:
962:
938:
932:
931:
929:
927:
921:
915:Lipothrixviridae
913:from the family
907:Tristromaviridae
896:
890:
889:
879:
847:
838:
837:
827:
787:
781:
780:
770:
730:
724:
723:
689:
680:
669:
668:
666:
664:
653:
642:
641:
639:
637:
626:
615:
614:
612:
610:
604:
591:
576:
575:
565:
548:(15): e0067321.
529:
504:
499:
498:
469:Lipothrixviridae
444:Tristromaviridae
404:Lipothrixviridae
300:tristromaviruses
296:lipothrixviruses
153:archaeal viruses
57:
56:
33:
19:
16:Realm of viruses
2010:
2009:
2005:
2004:
2003:
2001:
2000:
1999:
1980:
1979:
1976:
1971:
1811:
1801:
1771:
1746:
1657:Finnlakeviridae
1602:
1581:
1523:
1519:
1500:
1472:
1437:
1388:
1378:
1334:
1329:
1328:
1318:
1316:
1307:
1306:
1302:
1292:
1290:
1286:
1269:
1268:
1264:
1254:
1252:
1243:
1242:
1238:
1194:
1193:
1189:
1179:
1177:
1168:
1167:
1163:
1129:
1128:
1124:
1114:
1112:
1108:
1103:
1102:
1098:
1066:
1065:
1058:
1048:
1046:
1041:
1040:
1036:
1007:(11): 661β670.
996:
991:
990:
986:
940:
939:
935:
925:
923:
919:
898:
897:
893:
849:
848:
841:
789:
788:
784:
732:
731:
727:
687:
682:
681:
672:
662:
660:
655:
654:
645:
635:
633:
628:
627:
618:
608:
606:
602:
593:
592:
579:
531:
530:
523:
518:
500:
493:
490:
460:
440:Thermoproteales
424:Menathophagales
355:
320:
264:
262:Characteristics
203:
51:
17:
12:
11:
5:
2008:
2006:
1998:
1997:
1992:
1982:
1981:
1973:
1972:
1970:
1969:
1964:
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1957:
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1932:
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1925:
1920:
1915:
1907:
1899:
1898:
1897:
1887:
1882:
1877:
1868:
1863:
1858:
1853:
1848:
1843:
1838:
1837:
1836:
1831:
1821:
1815:
1813:
1807:
1806:
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1802:
1800:
1799:
1794:
1787:
1785:
1781:
1780:
1777:
1776:
1773:
1772:
1770:
1769:
1762:
1754:
1752:
1748:
1747:
1745:
1744:
1737:
1730:
1723:
1716:
1709:
1706:Polydnaviridae
1702:
1695:
1688:
1681:
1674:
1671:Globuloviridae
1667:
1664:Fuselloviridae
1660:
1653:
1646:
1643:Bicaudaviridae
1639:
1632:
1625:
1622:Ampullaviridae
1618:
1610:
1608:
1604:
1603:
1599:Naldaviricetes
1596:
1594:
1587:
1583:
1582:
1580:
1579:
1572:
1565:
1558:
1551:
1544:
1536:
1534:
1527:
1510:
1506:
1505:
1502:
1501:
1499:
1498:
1492:
1484:
1482:
1479:Incertae sedis
1474:
1473:
1471:
1470:
1463:
1458:
1453:
1447:
1445:
1439:
1438:
1436:
1435:
1430:
1429:
1428:
1423:
1413:
1407:
1405:
1394:
1390:
1389:
1379:
1377:
1376:
1369:
1362:
1354:
1348:
1347:
1333:
1332:External links
1330:
1327:
1326:
1300:
1274:Ligamenvirales
1262:
1247:Ligamenvirales
1236:
1187:
1161:
1142:(1β2): 39β45.
1122:
1096:
1056:
1034:
984:
933:
901:"Create genus
891:
862:(1): veaa023.
839:
782:
725:
698:(2): 135β136.
670:
643:
616:
577:
520:
519:
517:
514:
513:
512:
506:
505:
502:Viruses portal
489:
486:
477:Ligamenvirales
459:
456:
455:
454:
453:
452:
451:
450:
449:
448:
447:
446:
430:
415:Maximonvirales
410:
395:Ligamenvirales
354:
353:Classification
351:
319:
316:
263:
260:
222:Wolfram Zillig
202:
199:
151:that includes
134:
133:
125:
124:
120:
119:
112:
108:
107:
100:
96:
95:
88:
84:
83:
76:
69:
68:
63:
59:
58:
45:
44:
43:(AFV3) virion
35:
34:
26:
25:
15:
13:
10:
9:
6:
4:
3:
2:
2007:
1996:
1993:
1991:
1988:
1987:
1985:
1978:
1968:
1965:
1963:
1960:
1956:
1953:
1952:
1951:
1948:
1946:
1945:Tandem repeat
1943:
1941:
1938:
1936:
1933:
1929:
1926:
1924:
1921:
1919:
1916:
1914:
1911:
1910:
1908:
1906:
1903:
1900:
1896:
1893:
1892:
1891:
1888:
1886:
1883:
1881:
1878:
1875:
1874:
1873:Nanobacterium
1869:
1867:
1864:
1862:
1859:
1857:
1854:
1852:
1849:
1847:
1844:
1842:
1839:
1835:
1832:
1830:
1827:
1826:
1825:
1822:
1820:
1817:
1816:
1814:
1808:
1798:
1795:
1792:
1789:
1788:
1786:
1782:
1768:
1767:
1766:Rhizidiovirus
1763:
1761:
1760:
1756:
1755:
1753:
1749:
1743:
1742:
1738:
1736:
1735:
1734:Thaspiviridae
1731:
1729:
1728:
1724:
1722:
1721:
1720:Pospiviroidae
1717:
1715:
1714:
1710:
1708:
1707:
1703:
1701:
1700:
1699:Plasmaviridae
1696:
1694:
1693:
1689:
1687:
1686:
1685:Halspiviridae
1682:
1680:
1679:
1675:
1673:
1672:
1668:
1666:
1665:
1661:
1659:
1658:
1654:
1652:
1651:
1647:
1645:
1644:
1640:
1638:
1637:
1636:Avsunviroidae
1633:
1631:
1630:
1629:Anelloviridae
1626:
1624:
1623:
1619:
1617:
1616:
1612:
1611:
1609:
1605:
1601:
1600:
1595:
1591:
1588:
1584:
1578:
1577:
1573:
1571:
1570:
1566:
1564:
1563:
1559:
1557:
1556:
1552:
1550:
1549:
1548:Duplodnaviria
1545:
1543:
1542:
1538:
1537:
1535:
1531:
1528:
1526:
1522:
1518:
1514:
1511:
1507:
1496:
1493:
1491:
1490:
1486:
1485:
1483:
1481:
1480:
1475:
1468:
1464:
1462:
1459:
1457:
1454:
1452:
1449:
1448:
1446:
1444:
1440:
1434:
1431:
1427:
1424:
1422:
1421:Mitochondrion
1419:
1418:
1417:
1414:
1412:
1409:
1408:
1406:
1403:
1398:
1395:
1393:Cellular life
1391:
1386:
1382:
1375:
1370:
1368:
1363:
1361:
1356:
1355:
1352:
1345:
1340:
1336:
1335:
1331:
1314:
1312:
1304:
1301:
1285:
1283:
1279:
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1995:Virus realms
1977:
1962:Transpoviron
1895:Fungal prion
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1759:Dinodnavirus
1757:
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1727:Spiraviridae
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1692:Ovaliviridae
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1678:Guttaviridae
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1650:Clavaviridae
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1627:
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1576:Varidnaviria
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1555:Monodnaviria
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1905:microsphere
1824:Cancer cell
1569:Ribozyviria
1278:Rudiviridae
1104:Stedman K.
947:J Biol Chem
802:: giac079.
796:GigaScience
692:J Gen Virol
473:Rudiviridae
462:Viruses of
408:Rudiviridae
376:Zilligvirae
335:, and anti-
322:Viruses in
292:rudiviruses
277:acidophilic
266:Viruses in
218:Zilligvirae
161:alpha-helix
92:Zilligvirae
1984:Categories
1955:Retroposon
1902:Proteinoid
1812:structures
1810:Comparable
1586:Unassigned
1489:Parakaryon
1402:Prokaryota
856:Virus Evol
516:References
420:Candidatus
1562:Riboviria
1541:Adnaviria
1525:Satellite
1443:Eukaryota
1344:Adnaviria
1311:Adnaviria
1029:220516514
816:2047-217X
759:0022-538X
598:Adnaviria
536:Adnaviria
482:Adnaviria
464:Adnaviria
374:Kingdom:
370:Adnaviria
358:Adnaviria
347:Adnaviria
324:Adnaviria
304:Adnaviria
268:Adnaviria
256:viricetes
206:Adnaviria
201:Etymology
195:Adnaviria
187:Adnaviria
179:Adnaviria
140:Adnaviria
87:Kingdom:
80:Adnaviria
23:Adnaviria
1935:Ribozyme
1880:Phagemid
1607:Families
1467:Protista
1451:Animalia
1416:Bacteria
1231:10430569
1201:Genetics
1156:46094905
1091:25866378
1073:Virology
1021:32665595
979:19158076
886:32368353
834:35950839
777:34011550
720:54475961
712:30540248
572:34011550
488:See also
380:Phylum:
249:Georgian
241:viricota
173:envelope
130:See text
123:Subtaxa
99:Phylum:
1967:Xenobot
1885:Plasmid
1866:Jeewanu
1797:Obelisk
1593:Classes
1461:Plantae
1426:Plastid
1411:Archaea
1319:20 July
1293:20 July
1255:20 July
1222:1460677
1180:20 July
1115:20 July
1049:20 July
970:2675988
926:20 July
877:7189273
825:9366995
768:8274609
663:20 July
636:20 July
609:20 July
563:8274609
458:History
432:Order:
412:Order:
392:Order:
386:Class:
368:Realm:
281:archaea
191:archaea
149:viruses
111:Class:
1913:Retron
1856:Fosmid
1841:Cosmid
1791:Nanobe
1751:Genera
1533:Realms
1521:Viroid
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422:order
337:CRISPR
165:capsid
1890:Prion
1784:Other
1517:Virus
1456:Fungi
1287:(PDF)
1152:S2CID
1109:(PDF)
1025:S2CID
997:(PDF)
920:(PDF)
716:S2CID
688:(PDF)
237:talea
234:Latin
226:virae
214:viria
169:lipid
157:A-DNA
145:realm
143:is a
73:Realm
66:Virus
1829:HeLa
1433:LUCA
1381:Life
1321:2021
1295:2021
1280:and
1257:2021
1227:PMID
1182:2021
1117:2021
1087:PMID
1051:2021
1017:PMID
975:PMID
928:2021
882:PMID
830:PMID
812:ISSN
773:PMID
755:ISSN
708:PMID
665:2021
638:2021
611:2021
568:PMID
471:and
406:and
298:and
275:and
252:toki
210:Adna
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1497:(?)
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1209:doi
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