Knowledge (XXG)

Adnaviria

Source πŸ“

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flexible virions with an envelope, and they contain an additional protein sheath layer between the nucleoprotein complex and the envelope. Rudviruses have stiff, rod-like virions about 600–900 by 23 nm. At both ends of the virion, lipothrixviruses have mop- or claw-like structures connected to a collar, whereas rudiviruses and tristromaviruses have plugs at each end from which bundles of thin filaments emanate.
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began to be discovered in the 1980s by Wolfram Zillig and his colleagues. To discover these viruses, Zillig developed the methods used to culture their hosts. The first of these to be described were TTV1, TTV2, and TTV3 in 1983. TTV1 was classified as the first lipothrixvirus but is now classified as
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infect hyperthermophilic archaea and have linear, double-stranded DNA (dsDNA) genomes ranging from about 16 to 56 kilobase pairs in length. The ends of their genomes contain inverted terminal repeats. Notably, their genomes exist in A-form, also called A-DNA. A-form is proposed to be an adaptation
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Adnaviruses have filamentous virions, i.e. they are long, thin, and cylindrical. Lipothrixviruses have flexible virions about 900 nanometers (nm) in length and 24 nm in width in which the nucleoprotein helix is surrounded by a lipid envelope. Tristromaviruses, about 400 by 32 nm, likewise have
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have potentially existed for a long time, as it is thought that they may have infected the last archaeal common ancestor. In general, they show no genetic relation to viruses outside the realm. The only genes that are shared with other viruses are
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in 2012 based on evidence of their relation. Cryogenic electron microscopy would later show in 2020 that the MCPs of tristromaviruses contained a SIRV2-like fold like ligamenviruses, providing justification for establishing
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The creation of genomic A-DNA is caused by an interaction with major capsid protein (MCP) dimers, which, during virion assembly, cover pre-genomic B-DNA to form a helical nucleoprotein complex containing genomic A-DNA.
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have potentially existed for a long time, as it is thought that they may have infected the last archaeal common ancestor. In general, they show no genetic relation to any viruses outside the realm.
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Krupovic, Mart; Kuhn, Jens H.; Wang, Fengbin; Baquero, Diana P.; Dolja, Valerian V.; Egelman, Edward H.; Prangishvili, David; Koonin, Eugene V. (2021-07-12). Sandri-Goldin, Rozanne M. (ed.).
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Janekovic D, Wunderl S, Holz I, Zillig W, Gierl A, Neumann H (1983). "TTV1, TTV2 and TTV3, a family of viruses of the extremely thermophilic, anaerobic, sulfur reducing archaebacterium
175:. Some contain an additional protein layer between the nucleoprotein helix and the envelope. Complete virions are long and thin and may be flexible or a stiff like a rod. 193:, i.e. archaea that inhabit very high temperature environments such as hot springs. Their A-DNA genome may be an adaptation to this extreme environment. Viruses in 306:
contain a folded structure consisting of a type of alpha-helix bundle that contains four helices called the SIRV2 fold, named after the virus of the same name,
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proteins. Adnaviruses are morphologically similar to non-archaeal filamentous viruses but their virions are built from different capsid proteins. Viruses of
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a tristromavirus. SIRV2, a rudivirus, became a model for studying virus-host interactions after its discovery in 1998. The families
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domain. Furthermore, Adnaviria viruses have high genome redundancy, an adaptation mechanism to survive such extreme environments.
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showed that the viruses in the realm were related due to a shared MCP, A-DNA, and general virion structure. Viruses in
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that have a filamentous virion (i.e. body) and a linear, double-stranded DNA genome. The genome exists in A-form (
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Krupovic, M; Kuhn, JH; Wang, F; Baquero, DP; Dolja, VV; Egelman, EH; Prangishvili, D; Koonin, EV (12 July 2021).
509: 310:(SIRV2). Variations in the protein structure exist, but the same base structure is retained in all adnaviruses. 1850: 735:"Adnaviria : a New Realm for Archaeal Filamentous Viruses with Linear A-Form Double-Stranded DNA Genomes" 1939: 900: 1271: 1994: 1494: 1343: 1949: 1349: 423: 332: 48: 221: 1524: 328: 239:, meaning "rod", referring to the morphology of viruses in the realm, and the virus phylum suffix - 212:-, from A-DNA, referring to the A-form genomic DNA of all viruses in the realm. The second part, - 167:
proteins to form a helical nucleoprotein complex. For some viruses, this helix is surrounded by a
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Krupovic M, Kuhn JH, Wang F, Baquero DP, Egelman EH, Koonin EV, Prangishvili D (31 July 2020).
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Prangishvili D, Arnold HP, Gotz D, Ziese U, Holz I, Kristjansson JK, Zillig W (August 1999).
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Wang F, Baquero DP, Su Z, Osinski T, Prangishvili D, Egelman EH, Krupovic M (29 April 2020).
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Lawrence CM, Menon S, Eilers BJ, Bothner B, Khayat R, Douglas T, Young MJ (8 May 2009).
852:"Structure of a filamentous virus uncovers familial ties within the archaeal virosphere" 1705: 1670: 1663: 1642: 1621: 1598: 1478: 1221: 1196: 969: 942: 876: 851: 824: 791: 767: 734: 562: 533: 501: 414: 394: 172: 152: 1983: 1944: 1904: 1872: 1765: 1733: 1719: 1698: 1684: 1635: 1628: 1547: 1420: 1028: 1155: 1105: 719: 1961: 1894: 1758: 1726: 1691: 1677: 1649: 1575: 1554: 434: 399: 341: 1212: 807: 1823: 1568: 1081: 1068: 790:
Silva, Jorge Miguel; Pratas, Diogo; Caetano, TΓ’nia; Matos, SΓ©rgio (2022-08-11).
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bundle containing four helices. The virion consists of the genome encased in
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The nucleoprotein helix is composed of asymmetric units of two MCPs. For
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allowing DNA survival under extreme conditions since their hosts are
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is the suffix used for virus realms. The sole kingdom in the realm,
1045:. International Committee on Taxonomy of Viruses (ICTV). March 2021 683:
Prangishvili D, Rensen E, Mochizuki T, Krupovic M (February 2019).
1889: 1516: 1460: 1455: 254:(αƒ—αƒαƒ™αƒ˜), meaning "thread", and the suffix used for virus classes, - 233: 168: 156: 148: 65: 302:, it is a heterodimer of paralogous MCPs. The MCPs of viruses in 1828: 1432: 1380: 1353: 1042: 364:, which has three orders. This taxonomy is shown hereafter: 1069:"40 Years of archaeal virology: Expanding viral diversity" 438:, which contains viruses that infect archaea of the order 398:, which contains viruses that infect archaea of the order 1315:. International Committee on Taxonomy of Viruses (ICTV) 1289:. International Committee on Taxonomy of Viruses (ICTV) 1251:. International Committee on Taxonomy of Viruses (ICTV) 1176:. International Committee on Taxonomy of Viruses (ICTV) 943:"Structural and functional studies of archaeal viruses" 922:. International Committee on Taxonomy of Viruses (ICTV) 659:. International Committee on Taxonomy of Viruses (ICTV) 632:. International Committee on Taxonomy of Viruses (ICTV) 605:. International Committee on Taxonomy of Viruses (ICTV) 418:, which contains viruses that infect archaea of the 1809: 1783: 1750: 1606: 1592: 1585: 1532: 1515: 1508: 1476: 1441: 1399: 1392: 678: 676: 674: 624: 622: 620: 992:Krupovic M, Dolja VV, Koonin EV (November 2020). 360:is monotypic down to the rank of its sole class, 349:and for that reason are excluded from the realm. 1365: 651: 649: 647: 8: 1928:Reverse transcriptase-related cellular gene 1270:Prangishvili D, Krupovic M (21 June 2012). 792:"The complexity landscape of viral genomes" 527: 525: 1589: 1529: 1512: 1396: 1372: 1358: 1350: 1067:Snyder JC, Buldoc B, Young MJ (May 2015). 589: 587: 585: 583: 581: 426:, currently containing the single species 29: 18: 1220: 1080: 1062: 1060: 968: 958: 875: 823: 766: 685:"ICTV Taxonomy Profile: Tristromaviridae" 561: 308:Sulfolobus islandicus rod-shaped virus 2 1909:Retroelements not elsewhere classified 899:Prangshvili D, Krupovic M (July 2016). 521: 243:. Lastly, the sole class in the realm, 845: 843: 7: 1861:Integrative and conjugative element 294:, this is a homodimer, whereas for 129: 208:takes the first part of its name, 14: 1918:Diversity-generating retroelement 994:"The LUCA and its complex virome" 475:were then united under the order 1923:Telomerase reverse transcriptase 1495:Microbes with highly unusual DNA 1337: 494: 52: 228:. The name of the sole phylum, 1846:Defective interfering particle 1043:"Virus Taxonomy: 2022 Release" 181:was established in 2020 after 1: 1834:Clonally transmissible cancer 183:cryogenic electron microscopy 40:Acidianus filamentous virus 3 1387:, and comparable structures 1213:10.1093/genetics/152.4.1387 1111:. Portland State University 1082:10.1016/j.virol.2015.03.031 808:10.1093/gigascience/giac079 2011: 428:Yumkaaxvirus pescaderoense 402:, containing the families 1013:10.1038/s41579-020-0408-x 510:List of higher virus taxa 189:infect hyperthermophilic 127: 122: 47: 37: 28: 21: 1851:Endogenous viral element 1309:"ICTV Taxonomy history: 1276:containing the families 1245:"ICTV Taxonomy history: 1170:"ICTV Taxonomy history: 442:, containing the family 279:microorganisms from the 1172:Betatristromavirus TTV1 596:"Create one new realm ( 960:10.1074/jbc.R800078200 905:within the new family 247:, is constructed from 333:transcription factors 331:, ribbon-helix-helix 1950:Transposable element 1940:Spiegelman's Monster 1346:at Wikimedia Commons 1106:"Wolfram ASM Letter" 1075:. 479–480: 369–378. 751:10.1128/JVI.00673-21 704:10.1099/jgv.0.001190 554:10.1128/JVI.00673-21 329:glycosyltransferases 49:Virus classification 1132:Thermoproteus tenax 953:(19): 12599–12603. 911:Alphalipothrixvirus 903:Alphatristromavirus 739:Journal of Virology 542:Journal of Virology 171:membrane called an 1819:Bio-like structure 1741:Tolecusatellitidae 1272:"Create the order 1148:10.1007/BF00327644 868:10.1093/ve/veaa023 630:"Lipothrixviridae" 484:in the same year. 232:, is derived from 1975: 1974: 1805: 1804: 1779: 1778: 1775: 1774: 1713:Portogloboviridae 1615:Alphasatellitidae 1509:Non-cellular life 1504: 1503: 1385:non-cellular life 1342:Media related to 1001:Nat Rev Microbiol 909:and remove genus 745:(15): e00673–21. 273:hyperthermophilic 220:, is named after 136: 135: 2002: 1990:Archaeal viruses 1590: 1530: 1513: 1397: 1374: 1367: 1360: 1351: 1341: 1325: 1324: 1322: 1320: 1305: 1299: 1298: 1296: 1294: 1288: 1282:Lipothrixviridae 1267: 1261: 1260: 1258: 1256: 1241: 1235: 1234: 1224: 1207:(4): 1387–1396. 1192: 1186: 1185: 1183: 1181: 1166: 1160: 1159: 1127: 1121: 1120: 1118: 1116: 1110: 1101: 1095: 1094: 1084: 1064: 1055: 1054: 1052: 1050: 1039: 1033: 1032: 998: 989: 983: 982: 972: 962: 938: 932: 931: 929: 927: 921: 915:Lipothrixviridae 913:from the family 907:Tristromaviridae 896: 890: 889: 879: 847: 838: 837: 827: 787: 781: 780: 770: 730: 724: 723: 689: 680: 669: 668: 666: 664: 653: 642: 641: 639: 637: 626: 615: 614: 612: 610: 604: 591: 576: 575: 565: 548:(15): e0067321. 529: 504: 499: 498: 469:Lipothrixviridae 444:Tristromaviridae 404:Lipothrixviridae 300:tristromaviruses 296:lipothrixviruses 153:archaeal viruses 57: 56: 33: 19: 16:Realm of viruses 2010: 2009: 2005: 2004: 2003: 2001: 2000: 1999: 1980: 1979: 1976: 1971: 1811: 1801: 1771: 1746: 1657:Finnlakeviridae 1602: 1581: 1523: 1519: 1500: 1472: 1437: 1388: 1378: 1334: 1329: 1328: 1318: 1316: 1307: 1306: 1302: 1292: 1290: 1286: 1269: 1268: 1264: 1254: 1252: 1243: 1242: 1238: 1194: 1193: 1189: 1179: 1177: 1168: 1167: 1163: 1129: 1128: 1124: 1114: 1112: 1108: 1103: 1102: 1098: 1066: 1065: 1058: 1048: 1046: 1041: 1040: 1036: 1007:(11): 661–670. 996: 991: 990: 986: 940: 939: 935: 925: 923: 919: 898: 897: 893: 849: 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1551: 1544: 1536: 1534: 1527: 1510: 1506: 1505: 1502: 1501: 1499: 1498: 1492: 1484: 1482: 1479:Incertae sedis 1474: 1473: 1471: 1470: 1463: 1458: 1453: 1447: 1445: 1439: 1438: 1436: 1435: 1430: 1429: 1428: 1423: 1413: 1407: 1405: 1394: 1390: 1389: 1379: 1377: 1376: 1369: 1362: 1354: 1348: 1347: 1333: 1332:External links 1330: 1327: 1326: 1300: 1274:Ligamenvirales 1262: 1247:Ligamenvirales 1236: 1187: 1161: 1142:(1–2): 39–45. 1122: 1096: 1056: 1034: 984: 933: 901:"Create genus 891: 862:(1): veaa023. 839: 782: 725: 698:(2): 135–136. 670: 643: 616: 577: 520: 519: 517: 514: 513: 512: 506: 505: 502:Viruses portal 489: 486: 477:Ligamenvirales 459: 456: 455: 454: 453: 452: 451: 450: 449: 448: 447: 446: 430: 415:Maximonvirales 410: 395:Ligamenvirales 354: 353:Classification 351: 319: 316: 263: 260: 222:Wolfram Zillig 202: 199: 151:that includes 134: 133: 125: 124: 120: 119: 112: 108: 107: 100: 96: 95: 88: 84: 83: 76: 69: 68: 63: 59: 58: 45: 44: 43:(AFV3) virion 35: 34: 26: 25: 15: 13: 10: 9: 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1629:Anelloviridae 1626: 1624: 1623: 1619: 1617: 1616: 1612: 1611: 1609: 1605: 1601: 1600: 1595: 1591: 1588: 1584: 1578: 1577: 1573: 1571: 1570: 1566: 1564: 1563: 1559: 1557: 1556: 1552: 1550: 1549: 1548:Duplodnaviria 1545: 1543: 1542: 1538: 1537: 1535: 1531: 1528: 1526: 1522: 1518: 1514: 1511: 1507: 1496: 1493: 1491: 1490: 1486: 1485: 1483: 1481: 1480: 1475: 1468: 1464: 1462: 1459: 1457: 1454: 1452: 1449: 1448: 1446: 1444: 1440: 1434: 1431: 1427: 1424: 1422: 1421:Mitochondrion 1419: 1418: 1417: 1414: 1412: 1409: 1408: 1406: 1403: 1398: 1395: 1393:Cellular life 1391: 1386: 1382: 1375: 1370: 1368: 1363: 1361: 1356: 1355: 1352: 1345: 1340: 1336: 1335: 1331: 1314: 1312: 1304: 1301: 1285: 1283: 1279: 1275: 1266: 1263: 1250: 1248: 1240: 1237: 1232: 1228: 1223: 1218: 1214: 1210: 1206: 1202: 1198: 1191: 1188: 1175: 1173: 1165: 1162: 1157: 1153: 1149: 1145: 1141: 1137: 1136:Mol Gen Genet 1133: 1126: 1123: 1107: 1100: 1097: 1092: 1088: 1083: 1078: 1074: 1070: 1063: 1061: 1057: 1044: 1038: 1035: 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274: 269: 261: 259: 257: 253: 250: 246: 245:Tokiviricetes 242: 238: 235: 231: 230:Taleaviricota 227: 223: 219: 215: 211: 207: 200: 198: 196: 192: 188: 184: 180: 176: 174: 170: 166: 162: 158: 154: 150: 146: 142: 141: 132: 131: 126: 121: 118: 117: 116:Tokiviricetes 113: 110: 109: 106: 105: 104:Taleaviricota 101: 98: 97: 94: 93: 89: 86: 85: 82: 81: 77: 74: 71: 70: 67: 64: 61: 60: 55: 50: 46: 42: 41: 36: 32: 27: 24: 20: 1995:Virus realms 1977: 1962:Transpoviron 1895:Fungal prion 1871: 1764: 1759:Dinodnavirus 1757: 1739: 1732: 1727:Spiraviridae 1725: 1718: 1711: 1704: 1697: 1692:Ovaliviridae 1690: 1683: 1678:Guttaviridae 1676: 1669: 1662: 1655: 1650:Clavaviridae 1648: 1641: 1634: 1627: 1620: 1613: 1597: 1576:Varidnaviria 1574: 1567: 1560: 1555:Monodnaviria 1553: 1546: 1540: 1539: 1487: 1477: 1317:. 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Index


Acidianus filamentous virus 3
Virus classification
Edit this classification
Virus
Adnaviria
Zilligvirae
Taleaviricota
See text
realm
viruses
archaeal viruses
A-DNA
alpha-helix
capsid
lipid
envelope
cryogenic electron microscopy
archaea
Wolfram Zillig
Latin
Georgian
hyperthermophilic
acidophilic
archaea
rudiviruses
lipothrixviruses
tristromaviruses
Sulfolobus islandicus rod-shaped virus 2
glycosyltransferases

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