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Aminocyclitol

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24:. They possess features of relative and absolute configuration that are characteristic of their class and have been extensively studied; but these features are not clearly displayed by general methods of stereochemical nomenclature, so that special methods of specifying their configuration are justified and have long been used. In other than stereochemical respects, their nomenclature should follow the general rules of 512:
Choi, Woo Sik; Wu, Xiumei; Choeng, Yong-Hoon; Mahmud, Taifo; Jeong, Byeong Chul; Lee, Sang Hee; Chang, Yong Keun; Kim, Chang-Joon; Hong, Soon-Kwang (2008). "Genetic organization of the putative salbostatin biosynthetic gene cluster including the 2-epi-5-epi-valiolone synthase gene in Streptomyces
806:"Biosynthesis of the C7-cyclitol Moiety of Acarbose inActinoplanes Species SE50/110 7-O-PHOSPHORYLATION OF THE INITIAL CYCLITOL PRECURSOR LEADS TO PROPOSAL OF A NEW BIOSYNTHETIC PATHWAY" 424:"The AcbC Protein from Actinoplanes Species Is a C7-cyclitol Synthase Related to 3-Dehydroquinate Synthases and Is Involved in the Biosynthesis of the α-Glucosidase Inhibitor Acarbose" 165:
A, salbostatin, cetoniacytone A, and pyralomicin 1a. 2-epi-5-epi-valiolone synthase (EEVS), one of the sugar phosphate cyclase family enzyme and which is a homolog of
804:
Zhang, Chang-Sheng; Stratmann, Ansgar; Block, Oliver; Brückner, Ralph; Podeschwa, Michael; Altenbach, Hans-Josef; Wehmeier, Udo F.; Piepersberg, Wolfgang (2002).
336:
Naganawa, Hiroshi; Hashizume, Hideki; Kubota, Yumiko; Sawa, Ryuichi; Takahashi, Yoshikazu; Arakawa, Kenji; Bowers, Simeon G.; Mahmud, Taifo (2002).
896:"Alternative epimerization in C(7)N-aminocyclitol biosynthesis is catalyzed by ValD, a large protein of the vicinal oxygen chelate superfamily" 197:
biosynthesis, the C-N linkage which connect the C7 cyclitol moiety to the other was found to be formed by unprecedented actions of
463:
Yu, Yi; Bai, Linquan; Minagawa, Kazuyuki; Jian, Xiaohong; Li, Lei; Li, Jialiang; Chen, Shuangya; Cao, Erhu; Mahmud, Taifo (2005).
610:"Biosynthetic Gene Cluster of Cetoniacytone A, an Unusual Aminocyclitol from the Endosymbiotic Bacterium Actinomyces sp. Lu 9419" 1041:
Cavalier, Michael C.; Yim, Young-Sun; Asamizu, Shumpei; Neau, David; Almabruk, Khaled H.; Mahmud, Taifo; Lee, Yong-Hwan (2012).
1043:"Mechanistic insights into validoxylamine A 7'-phosphate synthesis by VldE using the structure of the entire product complex" 248:"Comparative metabolomic analysis of an alternative biosynthetic pathway to pseudosugars in Actinosynnema mirum DSM 43827" 193:, an important core structure is formed which leads to the formation of C7N aminocyclitol containing natural products. In 51:
which is also called as pseudosugars or pseudosaccharides. Aminocyclitols have chemical structures of a carbon ring with
297:"Structure and biosynthesis of cetoniacytone A, a cytotoxic aminocarba sugar produced by an endosymbiontic Actinomyces" 422:
Stratmann, Ansgar; Mahmud, Taifo; Lee, Sungsook; Distler, Juergen; Floss, Heinz G.; Piepersberg, Wolfgang (1999).
174: 166: 154: 150: 58:(s). The class of aminocyclitol containing natural products can be divided by ring sizes or types of precursors. 561:"A Comparative Analysis of the Sugar Phosphate Cyclase Superfamily Involved in Primary and Secondary Metabolism" 465:"Gene cluster responsible for validamycin biosynthesis in Streptomyces hygroscopicus subsp. jinggangensis 5008" 377:
Sieber, Simon; Carlier, Aurélien; Neuburger, Markus; Grabenweger, Giselher; Eberl, Leo; Gademann, Karl (2015).
847:"ValC, a New Type of C7-Cyclitol Kinase Involved in the Biosynthesis of the Antifungal Agent Validamycin A" 198: 708:"Evolutionary divergence of sedoheptulose 7-phosphate cyclases leads to several distinct cyclic products" 295:
Schlörke, Oliver; Krastel, Philipp; Müller, Ilka; Usón, Isabel; Dettner, Konrad; Zeeck, Axel (2002).
186: 41: 379:"Isolation and Total Synthesis of Kirkamide, an Aminocyclitol from an Obligate Leaf Nodule Symbiont" 559:
Wu, Xiumei; Flatt, Patricia M.; Schlörke, Oliver; Zeeck, Axel; Dairi, Tohru; Mahmud, Taifo (2007).
378: 202: 1147: 845:
Minagawa, Kazuyuki; Zhang, Yirong; Ito, Takuya; Bai, Linquan; Deng, Zixin; Mahmud, Taifo (2007).
538: 755:
Kean, Kelsey M.; Codding, Sara J.; Asamizu, Shumpei; Mahmud, Taifo; Karplus, P. Andrew (2014).
44:
that demonstrate significant biological activities. Aminocyclitols are found as a component of
1123: 1074: 1023: 994:"Pseudoglycosyltransferase catalyzes nonglycosidic C-N coupling in validamycin a biosynthesis" 974: 925: 876: 827: 786: 737: 706:
Asamizu, Shumpei; Xie, Pengfei; Brumsted, Corey J.; Flatt, Patricia M.; Mahmud, Taifo (2012).
688: 639: 590: 530: 494: 445: 401: 359: 318: 277: 170: 25: 1094:"Distinct Substrate Specificity and Catalytic Activity of the Pseudoglycosyltransferase VldE" 157:
intermediate, is a common precursor of C7N aminocyclitol moiety of natural products, such as
1113: 1105: 1064: 1054: 1013: 1005: 964: 956: 915: 907: 866: 858: 817: 776: 768: 727: 719: 678: 670: 629: 621: 580: 572: 522: 484: 476: 435: 393: 349: 308: 267: 259: 55: 338:"Biosynthesis of the cyclitol moiety of pyralomicin 1a in Nonomuraea spiralis MI178-34F18" 178: 139: 37: 943:
Yang, Jongtae; Xu, Hui; Zhang, Yirong; Bai, Linquan; Deng, Zixin; Mahmud, Taifo (2011).
894:
Xu, Hui; Zhang, Yirong; Yang, Jongtae; Mahmud, Taifo; Bai, Linquan; Deng, Zixin (2009).
757:"Structure of a sedoheptulose 7-phosphate cyclase: ValA from Streptomyces hygroscopicus" 1118: 1093: 1069: 1042: 1018: 993: 969: 944: 920: 895: 871: 846: 781: 756: 732: 707: 683: 658: 634: 609: 585: 560: 489: 464: 272: 247: 45: 1141: 119: 542: 480: 1109: 911: 115: 100: 659:"Genetic Insights into Pyralomicin Biosynthesis in Nonomuraea spiralis IMC A-0156" 1059: 194: 162: 135: 48: 354: 337: 313: 296: 173:, catalyzes the formation of a common intermediate, 2-epi-5-epi-valiolone from 526: 92: 440: 423: 222: 992:
Asamizu, Shumpei; Yang, Jongtae; Almabruk, Khaled H.; Mahmud, Taifo (2011).
96: 84: 1127: 1078: 1027: 978: 929: 880: 862: 831: 822: 805: 790: 741: 692: 643: 625: 594: 576: 534: 498: 449: 405: 397: 363: 322: 281: 263: 190: 158: 131: 88: 21: 945:"Nucleotidylation of unsaturated carbasugar in validamycin biosynthesis" 960: 1009: 772: 723: 674: 657:
Flatt, Patricia M.; Wu, Xiumei; Perry, Steven; Mahmud, Taifo (2013).
182: 126:
sedoheptulose 7-phosphate derived C7N aminocyclitol natural products
52: 608:
Wu, Xiumei; Flatt, Patricia M.; Xu, Hui; Mahmud, Taifo (2009).
246:
Asamizu, Shumpei; Abugreen, Mostafa; Mahmud, Taifo (2013).
205:-like enzymes (which is termed pseudoglycosyltransferase). 177:. After multiple enzyme reaction steps, which include 386:Angewandte Chemie International Edition in English 110:-inositol 1-phosphate derived aminoglycosides 8: 1092:Abuelizz, Hatem A.; Mahmud, Taifo (2015). 1117: 1068: 1058: 1017: 968: 919: 870: 821: 780: 731: 682: 633: 584: 488: 439: 353: 312: 271: 998:Journal of the American Chemical Society 712:Journal of the American Chemical Society 214: 515:Applied Microbiology and Biotechnology 469:Applied and Environmental Microbiology 40:is a class of sugar-derived microbial 7: 949:Organic & Biomolecular Chemistry 554: 552: 417: 415: 146:Biosynthesis of C7N aminocyclitols 14: 138:, validoxylamine A, salbostatin, 62:Five-membered ring aminocyclitols 189:, and keto-reduction reactions, 79:-inosose derived aminoglycosides 70:Six-membered ring aminocyclitols 810:Journal of Biological Chemistry 481:10.1128/AEM.71.9.5066-5076.2005 428:Journal of Biological Chemistry 1110:10.1016/j.chembiol.2015.04.021 912:10.1016/j.chembiol.2009.04.006 32:Aminocyclitol natural products 1: 1060:10.1371/journal.pone.0044934 142:, pyralomicin 1a, kirkamide 36:The aminocyclitol family of 663:Journal of Natural Products 1164: 355:10.7164/antibiotics.55.578 342:The Journal of Antibiotics 314:10.7164/antibiotics.55.635 301:The Journal of Antibiotics 527:10.1007/s00253-008-1591-2 175:sedoheptulose 7-phosphate 167:3-dehydroquinate synthase 155:pentose phosphate pathway 151:Sedoheptulose 7-phosphate 20:are compounds related to 441:10.1074/jbc.274.16.10889 1098:Chemistry & Biology 900:Chemistry & Biology 863:10.1002/cbic.200600528 823:10.1074/jbc.m202375200 626:10.1002/cbic.200800527 577:10.1002/cbic.200600446 398:10.1002/anie.201502696 264:10.1002/cbic.201300384 199:nucleotidyltransferase 42:secondary metabolites 130:This class includes 114:This class includes 83:This class includes 1004:(31): 12124–12135. 816:(25): 22853–22862. 718:(29): 12219–12229. 513:albus ATCC 21838". 434:(16): 10889–10896. 227:www.chem.qmul.ac.uk 203:glycosyltransferase 961:10.1039/c0ob00475h 1010:10.1021/ja203574u 773:10.1021/bi5003508 767:(26): 4250–4260. 724:10.1021/ja3041866 675:10.1021/np400159a 392:(27): 7968–7970. 258:(13): 1548–1551. 171:shikimate pathway 26:organic chemistry 1155: 1132: 1131: 1121: 1089: 1083: 1082: 1072: 1062: 1038: 1032: 1031: 1021: 989: 983: 982: 972: 940: 934: 933: 923: 891: 885: 884: 874: 842: 836: 835: 825: 801: 795: 794: 784: 752: 746: 745: 735: 703: 697: 696: 686: 654: 648: 647: 637: 605: 599: 598: 588: 556: 547: 546: 509: 503: 502: 492: 475:(9): 5066–5076. 460: 454: 453: 443: 419: 410: 409: 383: 374: 368: 367: 357: 333: 327: 326: 316: 292: 286: 285: 275: 243: 237: 236: 234: 233: 219: 56:functional group 38:natural products 1163: 1162: 1158: 1157: 1156: 1154: 1153: 1152: 1138: 1137: 1136: 1135: 1091: 1090: 1086: 1040: 1039: 1035: 991: 990: 986: 942: 941: 937: 893: 892: 888: 844: 843: 839: 803: 802: 798: 754: 753: 749: 705: 704: 700: 656: 655: 651: 607: 606: 602: 558: 557: 550: 511: 510: 506: 462: 461: 457: 421: 420: 413: 381: 376: 375: 371: 335: 334: 330: 294: 293: 289: 245: 244: 240: 231: 229: 221: 220: 216: 211: 179:phosphorylation 148: 140:cetoniacytone A 72: 64: 34: 12: 11: 5: 1161: 1159: 1151: 1150: 1140: 1139: 1134: 1133: 1104:(6): 724–733. 1084: 1033: 984: 955:(2): 438–449. 935: 906:(5): 567–576. 886: 857:(6): 632–641. 837: 796: 747: 698: 669:(5): 939–946. 649: 620:(2): 304–314. 600: 571:(2): 239–248. 548: 521:(4): 637–645. 504: 455: 411: 369: 348:(6): 578–584. 328: 307:(7): 635–642. 287: 238: 213: 212: 210: 207: 147: 144: 128: 127: 112: 111: 81: 80: 71: 68: 63: 60: 46:aminoglycoside 33: 30: 18:aminocyclitols 13: 10: 9: 6: 4: 3: 2: 1160: 1149: 1146: 1145: 1143: 1129: 1125: 1120: 1115: 1111: 1107: 1103: 1099: 1095: 1088: 1085: 1080: 1076: 1071: 1066: 1061: 1056: 1053:(9): e44934. 1052: 1048: 1044: 1037: 1034: 1029: 1025: 1020: 1015: 1011: 1007: 1003: 999: 995: 988: 985: 980: 976: 971: 966: 962: 958: 954: 950: 946: 939: 936: 931: 927: 922: 917: 913: 909: 905: 901: 897: 890: 887: 882: 878: 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29: 27: 23: 19: 1101: 1097: 1087: 1050: 1046: 1036: 1001: 997: 987: 952: 948: 938: 903: 899: 889: 854: 850: 840: 813: 809: 799: 764: 761:Biochemistry 760: 750: 715: 711: 701: 666: 662: 652: 617: 613: 603: 568: 564: 518: 514: 507: 472: 468: 458: 431: 427: 389: 385: 372: 345: 341: 331: 304: 300: 290: 255: 251: 241: 230:. Retrieved 226: 217: 149: 129: 116:streptomycin 113: 107: 82: 76: 65: 35: 17: 15: 851:ChemBioChem 614:ChemBioChem 565:ChemBioChem 252:ChemBioChem 223:"cyclitols" 195:validamycin 187:dehydration 163:validamycin 136:validamycin 66:pactamycin 49:antibiotics 232:2016-01-08 209:References 101:hygromycin 93:gentamicin 1148:Cyclitols 97:apramycin 85:kanamycin 22:cyclitols 1142:Category 1128:26051218 1079:23028689 1047:PLOS ONE 1028:21766819 979:20981366 930:19477421 881:17335096 832:11937512 791:24832673 742:22741921 693:23607523 644:19101977 595:17195255 543:12324872 535:18648803 499:16151088 450:10196166 406:26033226 364:12195964 323:12243453 282:23939727 191:valienol 159:acarbose 132:acarbose 89:neomycin 75:2-deoxy- 1119:4475420 1070:3441724 1019:3162038 970:3124559 921:2737586 872:3136165 782:4095911 733:3405187 684:3684624 635:3136446 586:3127856 490:1214664 273:3835175 1126:  1116:  1077:  1067:  1026:  1016:  977:  967:  928:  918:  879:  869:  830:  789:  779:  740:  730:  691:  681:  642:  632:  593:  583:  541:  533:  497:  487:  448:  404:  362:  321:  280:  270:  77:scyllo 539:S2CID 382:(PDF) 53:amine 1124:PMID 1075:PMID 1024:PMID 975:PMID 926:PMID 877:PMID 828:PMID 787:PMID 738:PMID 689:PMID 640:PMID 591:PMID 531:PMID 495:PMID 446:PMID 402:PMID 360:PMID 319:PMID 278:PMID 201:and 153:, a 16:The 1114:PMC 1106:doi 1065:PMC 1055:doi 1014:PMC 1006:doi 1002:133 965:PMC 957:doi 916:PMC 908:doi 867:PMC 859:doi 818:doi 814:277 777:PMC 769:doi 728:PMC 720:doi 716:134 679:PMC 671:doi 630:PMC 622:doi 581:PMC 573:doi 523:doi 485:PMC 477:doi 436:doi 432:274 394:doi 350:doi 309:doi 268:PMC 260:doi 169:in 108:myo 1144:: 1122:. 1112:. 1102:22 1100:. 1096:. 1073:. 1063:. 1049:. 1045:. 1022:. 1012:. 1000:. 996:. 973:. 963:. 951:. 947:. 924:. 914:. 904:16 902:. 898:. 875:. 865:. 853:. 849:. 826:. 812:. 808:. 785:. 775:. 765:53 763:. 759:. 736:. 726:. 714:. 710:. 687:. 677:. 667:76 665:. 661:. 638:. 628:. 618:10 616:. 612:. 589:. 579:. 567:. 563:. 551:^ 537:. 529:. 519:80 517:. 493:. 483:. 473:71 471:. 467:. 444:. 430:. 426:. 414:^ 400:. 390:54 388:. 384:. 358:. 346:55 344:. 340:. 317:. 305:55 303:. 299:. 276:. 266:. 256:14 254:. 250:. 225:. 185:, 181:, 161:, 134:, 122:. 118:, 103:. 99:, 95:, 91:, 87:, 28:. 1130:. 1108:: 1081:. 1057:: 1051:7 1030:. 1008:: 981:. 959:: 953:9 932:. 910:: 883:. 861:: 855:8 834:. 820:: 793:. 771:: 744:. 722:: 695:. 673:: 646:. 624:: 597:. 575:: 569:8 545:. 525:: 501:. 479:: 452:. 438:: 408:. 396:: 366:. 352:: 325:. 311:: 284:. 262:: 235:.

Index

cyclitols
organic chemistry
natural products
secondary metabolites
aminoglycoside
antibiotics
amine
functional group
kanamycin
neomycin
gentamicin
apramycin
hygromycin
streptomycin
spectinomycin
acarbose
validamycin
cetoniacytone A
Sedoheptulose 7-phosphate
pentose phosphate pathway
acarbose
validamycin
3-dehydroquinate synthase
shikimate pathway
sedoheptulose 7-phosphate
phosphorylation
epimerization
dehydration
valienol
validamycin

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