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COMPLEAT (Bioinformatics tool)

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tool used to analyze high-throughput datasets (or small-scale datasets) using protein complex enrichment analysis. The tool uses a protein complex resource as the back end annotation data instead of conventional
44:- or pathway-based annotations. The tool incorporates several useful features in order to provide a comprehensive data-mining environment, including network-based visualization and interactive querying options. 151:
Neumüller, R.A; Gross, T; Samsonova, A; Vinayagam, A; Buckner, M; Founk, K; Hu, Y; Sharifpoor, S; Rosebrock, AP; Andrews, B; Winston, F; Perrimon, N (Aug 20, 2013).
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Dynamic protein complexes regulated by insulin and epidermal growth factors signaling, including a role of Brahma complex in the cellular response to insulin.
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Evolutionarily conserved molecular complexes that regulate nucleolar size when the complex constituents were targeted by RNA interference.
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Vinayagam, A; Hu, Y; Kulkarni, M; Roesel, C; Sopko, R; Mohr, SE; Perrimon, N (Feb 26, 2013).
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Novel role of endocytosis and vesicle trafficking complexes in Hippo Signaling Pathway.
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Kwon, Y; Vinayagam, A; Sun, X; Dephoure, N; Gygi, S.P; Hong, P; Perrimon, N (2013).
153:"Conserved Regulators of Nucleolar Size Revealed by Global Phenotypic Analyses" 168: 119: 52: 217: 235: 186: 137: 104:"Protein complex-based analysis framework for high-throughput data sets" 252: 71:
COMPLEAT has been successfully applied to identify:
63:where protein complex information is relevant. 8: 97: 95: 225: 202:"The Hippo Signaling Pathway Interactome" 176: 127: 91: 7: 14: 47:COMPLEAT may be used to analyze 1: 294: 16:Online bioinformatics tool 169:10.1126/scisignal.2004145 120:10.1126/scisignal.2003629 61:high-throughput datasets 278:Bioinformatics software 218:10.1126/science.1243971 268:Data analysis software 57:gene expression data 53:proteomic datasets 157:Science Signaling 108:Science Signaling 35:ool is an online 285: 240: 239: 229: 212:(6159): 737–40. 197: 191: 190: 180: 148: 142: 141: 131: 99: 293: 292: 288: 287: 286: 284: 283: 282: 273:Systems biology 258: 257: 249: 244: 243: 199: 198: 194: 150: 149: 145: 101: 100: 93: 88: 69: 17: 12: 11: 5: 291: 289: 281: 280: 275: 270: 260: 259: 256: 255: 248: 247:External links 245: 242: 241: 192: 143: 90: 89: 87: 84: 83: 82: 79: 76: 68: 65: 59:and any other 37:bioinformatics 15: 13: 10: 9: 6: 4: 3: 2: 290: 279: 276: 274: 271: 269: 266: 265: 263: 254: 251: 250: 246: 237: 233: 228: 223: 219: 215: 211: 207: 203: 196: 193: 188: 184: 179: 174: 170: 166: 163:(289): ra70. 162: 158: 154: 147: 144: 139: 135: 130: 125: 121: 117: 113: 109: 105: 98: 96: 92: 85: 80: 77: 74: 73: 72: 66: 64: 62: 58: 54: 50: 45: 43: 42:gene ontology 38: 34: 30: 26: 22: 209: 205: 195: 160: 156: 146: 114:(264): rs5. 111: 107: 70: 67:Applications 49:RNAi screens 46: 32: 28: 24: 20: 18: 262:Categories 86:References 27:nrichment 253:COMPLEAT 236:24114784 187:23962978 138:23443684 31:nalysis 19:Protein 227:3951131 206:Science 178:3964804 129:3756668 234:  224:  185:  175:  136:  126:  21:Compl 232:PMID 183:PMID 134:PMID 222:PMC 214:doi 210:342 173:PMC 165:doi 124:PMC 116:doi 23:ex 264:: 230:. 220:. 208:. 204:. 181:. 171:. 159:. 155:. 132:. 122:. 110:. 106:. 94:^ 55:, 51:, 238:. 216:: 189:. 167:: 161:6 140:. 118:: 112:6 33:T 29:A 25:E

Index

bioinformatics
gene ontology
RNAi screens
proteomic datasets
gene expression data
high-throughput datasets


"Protein complex-based analysis framework for high-throughput data sets"
doi
10.1126/scisignal.2003629
PMC
3756668
PMID
23443684
"Conserved Regulators of Nucleolar Size Revealed by Global Phenotypic Analyses"
doi
10.1126/scisignal.2004145
PMC
3964804
PMID
23962978
"The Hippo Signaling Pathway Interactome"
doi
10.1126/science.1243971
PMC
3951131
PMID
24114784
COMPLEAT

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