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Chimpanzee genome project

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42: 1488: 264:. About 30 percent of all human proteins are identical in sequence to the corresponding chimpanzee protein. As mentioned above, gene duplications are a major source of differences between human and chimpanzee genetic material, with about 2.7 percent of the genome now representing differences having been produced by gene duplications or deletions during approximately 6 million years since humans and chimpanzees diverged from their common evolutionary ancestor. The comparable variation within human populations is 0.5 percent. 855: 589: 1736: 362: 299:), have often evolved faster in the human relative to chimpanzee; relatively small changes in these genes may account for the morphological differences between humans and chimpanzees. A set of 348 transcription factor genes code for proteins with an average of about 50 percent more amino acid changes in the human lineage than in the chimpanzee lineage. 369:
The results of the chimpanzee genome project suggest that when ancestral chromosomes 2A and 2B fused to produce human chromosome 2, no genes were lost from the fused ends of 2A and 2B. At the site of fusion, there are approximately 150,000 base pairs of sequence not found in chimpanzee chromosomes 2A
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development and function. Although changes in expression of genes that are expressed in the brain tend to be less than for other organs (such as liver) on average, gene expression changes in the brain have been more dramatic in the human lineage than in the chimpanzee lineage. This is consistent with
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that seems unique to the human lineage while the entire chromosomal region shows lower than normal genetic variation. This pattern suggests that one or a few strongly selected genes in the chromosome region may have been preventing the random accumulation of neutral changes in other nearby genes. One
346: 414:). Humans are unusual in that they have several copies of cobalamin synthetase-like genes, including the one on chromosome 2. It remains to be determined what the function of these human cobalamin synthetase-like genes is. If these genes are involved in vitamin B 180:
Another study showed that patterns of DNA methylation, which are a known regulation mechanism for gene expression, differ in the prefrontal cortex of humans versus chimpanzees, and implicated this difference in the evolutionary divergence of the two species.
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the dramatic divergence of the unique pattern of human brain development seen in the human lineage compared to the ancestral great ape pattern. The protocadherin-beta gene cluster on chromosome 5 also shows evidence of possible positive selection.
200:). Parts of human chromosome 2 are scattered among parts of several cat and rat chromosomes in these species that are more distantly related to humans (more ancient common ancestors; about 85 million years since the human/rodent common ancestor 87:
The research showed considerable genome diversity in chimpanzees with many population-specific traits. The central chimpanzees retain the highest diversity in the chimpanzee lineage, whereas the other subspecies demonstrate signs of
374:. This suggests that a copy of these genes may have been added to the end of the ancestral 2A or 2B prior to the fusion event. It remains to be determined if these inserted genes confer a selective advantage. 1170:
Khaitovich P, Hellmann I, Enard W, Nowick K, Leinweber M, Franz H, Weiss G, Lachmann M, Pääbo S (September 2005). "Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees".
173:, which is involved in speech development, are different in the human lineage. Several genes involved in hearing were also found to have changed during human evolution, suggesting selection involving human 315:(CFTR) gene, which is important for ion transport in tissues such as the salt-secreting epithelium of sweat glands. Human mutations in the CFTR gene might be selected for as a way to survive 302:
Six human chromosomal regions were found that may have been under particularly strong and coordinated selection during the past 250,000 years. These regions contain at least one marker
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corresponding to this region have been isolated. This region is also present in the closely related chromosome 9p terminal region that contains copies of the PGML/FOXD/CBWD genes.
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Cheng Z, Ventura M, She X, Khaitovich P, Graves T, Osoegawa K, et al. (September 2005). "A genome-wide comparison of recent chimpanzee and human segmental duplications".
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account for most of the sequence differences between humans and chimps. Single-base-pair substitutions account for about half as much genetic change as does gene duplication.
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Stenger S, Hanson DA, Teitelbaum R, Dewan P, Niazi KR, Froelich CJ, et al. (October 1998). "An antimicrobial activity of cytolytic T cells mediated by granulysin".
114:. Humans have 23 pairs of chromosomes and other great apes have 24 pairs of chromosomes. In the human evolutionary lineage, two ancestral ape chromosomes fused at their 418:
metabolism, this could be relevant to human evolution. A major change in human development is greater post-natal brain growth than is observed in other apes. Vitamin B
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About 600 genes were identified that may have been undergoing strong positive selection in the human and chimpanzee lineages; many of these genes are involved in
216: 479:"Differences between human and chimpanzee genomes and their implications in gene expression, protein functions and biochemical properties of the two species" 166:
genome project was initiated. In December 2003, a preliminary analysis of 7600 genes shared between the two genomes confirmed that certain genes such as the
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Results from the human and chimpanzee genome analyses should help in understanding some human diseases. Humans appear to have lost a functional
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D4-like gene is an example of an intronless gene. The function of this gene is not known, but it may code for a transcription control protein.
636: 611: 1224:"Identification and characterization of coding single-nucleotide polymorphisms within human protocadherin-alpha and -beta gene clusters" 122:. There are nine other major chromosomal differences between chimpanzees and humans: chromosome segment inversions on human chromosomes 1602: 370:
and 2B. Additional linked copies of the PGML/FOXD/CBWD genes exist elsewhere in the human genome, particularly near the p end of
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Diagramatic representation of the location of the fusion site of chromosomes 2A and 2B and the genes inserted at this location.
34:. Sequencing began in 2005 and by 2013 twenty-four individual chimpanzees had been sequenced. This project was folded into the 814:"Divergent Whole-Genome Methylation Maps of Human and Chimpanzee Brains Reveal Epigenetic Basis of Human Regulatory Evolution" 1329: 230:
A database now exists containing the genetic differences between human and chimpanzee genes, with about thirty-five million
1265:"Gene content and function of the ancestral chromosome fusion site in human chromosome 2q13-2q14.1 and paralogous regions" 224: 1222:
Miki R, Hattori K, Taguchi Y, Tada MN, Isosaka T, Hidaka Y, Hirabayashi T, Hashimoto R, Fukuzako H, Yagi T (April 2005).
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Goodman BE, Percy WH (June 2005). "CFTR in cystic fibrosis and cholera: from membrane transport to clinical practice".
870: 459: 69: 1685: 1537: 443: 410:. In the distant past, a common ancestor to mice and apes incorporated a copy of a cobalamin synthetase gene (see: 277: 291:). By comparing human and chimpanzee genes to the genes of other mammals, it has been found that genes coding for 1649: 1617: 1567: 242: 1765: 1487: 411: 1547: 1643: 1622: 854: 588: 192:(green color code) was derived from two smaller chromosomes that are found in other great apes (now called 1532: 339: 52:
In 2013 high resolution sequences were published from each of the four recognized chimpanzee subspecies:
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are very alike. The primary difference is that humans have one fewer pair of chromosomes than do other
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pseudogene of human chromosome 2. This gene is incomplete and doesn't produce a functional transcript.
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De Grouchy J (August 1987). "Chromosome phylogenies of man, great apes, and Old World monkeys".
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Chimpanzee-human chromosome differences. A major structural difference is that human chromosome
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Another such region on chromosome 4 may contain elements regulating the expression of a nearby
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deficiency during brain development results in severe neurological defects in human children.
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Caswell JL, Mallick S, Richter DJ, Neubauer J, Schirmer C, Gnerre S, Reich D (April 2008).
1696: 1421: 1411: 1184: 1105: 1054: 934: 779: 669: 555: 1018: 991: 838: 813: 688: 653: 572: 539: 505: 478: 404: 231: 1289: 1264: 953: 918: 345: 84:, 4 sequences. They were all sequenced to a mean of 25-fold coverage per individual. 1754: 1739: 1315: 323: 282: 268: 1208: 903: 1557: 1542: 1517: 1078: 740: 392: 119: 1113: 1008: 1552: 1507: 1376: 812:
Zeng, J.; Konopa, G.; Hunt, B.G.; Preuss, T.M.; Geschwind, D.; Yi, S.V. (2012).
759:"Initial sequence of the chimpanzee genome and comparison with the human genome" 361: 184: 1240: 1223: 829: 495: 1701: 1392: 977:"Chimpanzee genome database (Genome Data Viewer Pan troglodytes (chimpanzee))" 446: 335: 272: 261: 239: 111: 107: 104: 1148: 1691: 1434: 1192: 943: 678: 1298: 1249: 1200: 1156: 1070: 1027: 962: 895: 847: 797: 697: 581: 514: 338:
gene, which in other primates codes for an enzyme that may protect against
1121: 732: 1660: 235: 174: 115: 1062: 788: 563: 1655: 1638: 1582: 1405: 919:"Placental mammal diversification and the Cretaceous-Tertiary boundary" 724: 316: 257: 1280: 887: 1472: 1382: 654:"Chimpanzee genomic diversity reveals ancient admixture with bonobos" 303: 31: 992:"Analysis of chimpanzee history based on genome sequence alignments" 606:. Washington, DC: Smithsonian Institution Press. pp. 303–307. 281:) or are targeted receptors of pathogenic microorganisms (example: 227:. The article marked the completion of the draft genome sequence. 1721: 1711: 1363: 399: 360: 344: 327: 308: 296: 183: 167: 100: 40: 1716: 1357: 1311: 917:
Springer MS, Murphy WJ, Eizirik E, O'Brien SJ (February 2003).
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An analysis of the chimpanzee genome sequence was published in
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Effort to determine the DNA sequence of the chimpanzee genome
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Fan Y, Newman T, Linardopoulou E, Trask BJ (November 2002).
219:, a group of scientists which is supported in part by the 311:
gene (mentioned above) and this region also includes the
403:. Cobalamin synthetase is a bacterial enzyme that makes 1307: 540:"Great ape genetic diversity and population history" 215:
on September 1, 2005, in an article produced by the
1631: 1581: 1495: 1345: 757:Chimpanzee Sequencing; Analysis Consortium (2005). 313:
Cystic fibrosis transmembrane conductance regulator
869: 422:is important for brain development, and vitamin B 205:Draft genome sequence of the common chimpanzee 1323: 217:Chimpanzee Sequencing and Analysis Consortium 8: 271:defense against microbial disease (example: 477:Suntsova, M.V.; Buzdin, A.A. (2020-09-10). 349:Human and chimpanzee genomes. M stands for 1330: 1316: 1308: 1288: 1239: 1017: 1007: 952: 942: 837: 787: 687: 677: 571: 504: 494: 307:such region on chromosome 7 contains the 752: 750: 538:Prado-Martinez, J.; et al. (2013). 221:National Human Genome Research Institute 527: 449:are scattered through the human genome. 818:The American Journal of Human Genetics 533: 531: 45:Two juvenile central chimpanzees, the 1666:Chimpanzee–human last common ancestor 357:Genes of the chromosome 2 fusion site 7: 1676:Orangutan–human last common ancestor 629:Apes Like Us: Portraits of a Kinship 652:de Manuel, M.; et al. (2016). 631:. Mannheim: Panorama. p. 114. 1671:Gorilla–human last common ancestor 1603:Kinshasa Declaration on Great Apes 14: 1681:Gibbon–human last common ancestor 260:differ in only an average of two 1735: 1734: 1486: 853: 587: 1613:Great Apes Survival Partnership 1563:Iowa Primate Learning Sanctuary 434:transcripts of unknown function 326:gene that may be important for 23:was an effort to determine the 158:. After the completion of the 82:Pan troglodytes schweinfurthii 1: 252:Typical human and chimpanzee 225:National Institutes of Health 1114:10.1126/science.282.5386.121 1009:10.1371/journal.pgen.1000057 923:Proc. Natl. Acad. Sci. U.S.A 627:Hof, J.; Sommer, V. (2010). 460:Human evolutionary genetics 295:, such as forkhead-box P2 ( 70:Nigeria-Cameroon chimpanzee 58:Pan troglodytes troglodytes 1787: 1686:List of fictional primates 1538:Neanderthal genome project 1241:10.1016/j.gene.2004.11.044 830:10.1016/j.ajhg.2012.07.024 496:10.1186/s12864-020-06962-8 278:Mycobacterium tuberculosis 1730: 1618:International Primate Day 1568:Borneo Orangutan Survival 1523:Chimpanzee genome project 1484: 602:Groves, Colin P. (2001). 21:Chimpanzee Genome Project 1149:10.1152/advan.00035.2004 412:Horizontal gene transfer 36:Great Ape Genome Project 1644:List of individual apes 1623:Nonhuman Rights Project 1193:10.1126/science.1108296 944:10.1073/pnas.0334222100 679:10.1126/science.aag2602 74:Pan troglodytes ellioti 1533:Gladys Kalema-Zikusoka 444:ribosomal protein L23a 366: 353: 275:is protective against 234:changes, five million 201: 90:population bottlenecks 49: 1548:Lone Drøscher Nielsen 876:Cytogenet. Genome Res 364: 348: 293:transcription factors 288:Plasmodium falciparum 187: 66:Pan troglodytes verus 44: 1528:Human Genome Project 868:McConkey EH (2004). 465:Human Genome Project 238:events, and various 171:transcription factor 160:Human genome project 1573:Primate archaeology 1185:2005Sci...309.1850K 1106:1998Sci...282..121S 1063:10.1038/nature04000 1055:2005Natur.437...88C 935:2003PNAS..100.1056S 789:10.1038/nature04072 780:2005Natur.437...69. 670:2016Sci...354..477D 564:10.1038/nature12228 556:2013Natur.499..471P 340:Alzheimer's disease 76:, 4 sequences; and 47:nominate subspecies 1503:Great ape language 1461:Tapanuli orangutan 1441:Sumatran orangutan 725:10.1007/bf00057436 383:phosphoglucomutase 367: 354: 236:insertion/deletion 202: 118:, producing human 78:Eastern chimpanzee 62:Western chimpanzee 54:Central chimpanzee 50: 1748: 1747: 1608:Great Ape Project 1451:Bornean orangutan 1281:10.1101/gr.338402 888:10.1159/000078022 638:978-3-89823-435-1 613:978-1-56098-872-4 550:(7459): 471–475. 351:Mitochondrial DNA 247:Gene duplications 232:single-nucleotide 164:common chimpanzee 1778: 1738: 1737: 1707:Mythic humanoids 1490: 1465:P. tapanuliensis 1332: 1325: 1318: 1309: 1303: 1302: 1292: 1260: 1254: 1253: 1243: 1219: 1213: 1212: 1179:(5742): 1850–4. 1167: 1161: 1160: 1137:Adv Physiol Educ 1132: 1126: 1125: 1089: 1083: 1082: 1038: 1032: 1031: 1021: 1011: 987: 981: 980: 973: 967: 966: 956: 946: 914: 908: 907: 873: 865: 859: 858: 857: 851: 841: 809: 803: 801: 791: 763: 754: 745: 744: 708: 702: 701: 691: 681: 664:(6311): 477–48. 649: 643: 642: 624: 618: 617: 604:Primate Taxonomy 599: 593: 592: 591: 585: 575: 535: 518: 508: 498: 60:, 10 sequences; 27:sequence of the 1786: 1785: 1781: 1780: 1779: 1777: 1776: 1775: 1766:Genome projects 1751: 1750: 1749: 1744: 1726: 1697:Human evolution 1627: 1584: 1577: 1513:BirutÄ— Galdikas 1491: 1482: 1422:Western gorilla 1412:Eastern gorilla 1348: 1341: 1336: 1306: 1275:(11): 1663–72. 1262: 1261: 1257: 1221: 1220: 1216: 1169: 1168: 1164: 1134: 1133: 1129: 1100:(5386): 121–5. 1091: 1090: 1086: 1049:(7055): 88–93. 1040: 1039: 1035: 1002:(4): e1000057. 989: 988: 984: 975: 974: 970: 916: 915: 911: 867: 866: 862: 852: 811: 810: 806: 802: 774:(7055): 69–87. 761: 756: 755: 748: 710: 709: 705: 651: 650: 646: 639: 626: 625: 621: 614: 601: 600: 596: 586: 537: 536: 529: 525: 476: 473: 471:Further reading 456: 425: 421: 417: 408: 359: 207: 168:forkhead-box P2 98: 68:, 6 sequences; 17: 12: 11: 5: 1784: 1782: 1774: 1773: 1768: 1763: 1753: 1752: 1746: 1745: 1743: 1742: 1731: 1728: 1727: 1725: 1724: 1719: 1714: 1709: 1704: 1699: 1694: 1689: 1683: 1678: 1673: 1668: 1663: 1658: 1653: 1647: 1641: 1635: 1633: 1629: 1628: 1626: 1625: 1620: 1615: 1610: 1605: 1600: 1595: 1589: 1587: 1579: 1578: 1576: 1575: 1570: 1565: 1560: 1555: 1550: 1545: 1540: 1535: 1530: 1525: 1520: 1515: 1510: 1505: 1499: 1497: 1493: 1492: 1485: 1483: 1481: 1480: 1479:: Hylobatidae) 1470: 1469: 1468: 1458: 1448: 1431: 1430: 1429: 1419: 1402: 1401: 1400: 1397:P. troglodytes 1390: 1373: 1372: 1371: 1353: 1351: 1343: 1342: 1337: 1335: 1334: 1327: 1320: 1312: 1305: 1304: 1255: 1214: 1162: 1127: 1084: 1033: 982: 968: 929:(3): 1056–61. 909: 860: 824:(3): 455–465. 804: 746: 719:(1–2): 37–52. 703: 644: 637: 619: 612: 594: 526: 524: 521: 520: 519: 472: 469: 468: 467: 462: 455: 452: 451: 450: 437: 427: 423: 419: 415: 406: 396: 386: 358: 355: 243:rearrangements 206: 203: 97: 94: 15: 13: 10: 9: 6: 4: 3: 2: 1783: 1772: 1769: 1767: 1764: 1762: 1759: 1758: 1756: 1741: 1733: 1732: 1729: 1723: 1720: 1718: 1715: 1713: 1710: 1708: 1705: 1703: 1700: 1698: 1695: 1693: 1690: 1687: 1684: 1682: 1679: 1677: 1674: 1672: 1669: 1667: 1664: 1662: 1659: 1657: 1654: 1651: 1650:Apes in space 1648: 1645: 1642: 1640: 1637: 1636: 1634: 1630: 1624: 1621: 1619: 1616: 1614: 1611: 1609: 1606: 1604: 1601: 1599: 1596: 1594: 1591: 1590: 1588: 1586: 1585:social status 1580: 1574: 1571: 1569: 1566: 1564: 1561: 1559: 1556: 1554: 1551: 1549: 1546: 1544: 1541: 1539: 1536: 1534: 1531: 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93: 91: 85: 83: 79: 75: 71: 67: 63: 59: 55: 48: 43: 39: 37: 33: 30: 26: 22: 1598:Research ban 1558:Elgin Center 1543:Willie Smits 1522: 1518:Jane Goodall 1464: 1454: 1444: 1433: 1425: 1415: 1404: 1396: 1386: 1375: 1367: 1356: 1272: 1268: 1258: 1231: 1227: 1217: 1176: 1172: 1165: 1143:(2): 75–82. 1140: 1136: 1130: 1097: 1093: 1087: 1046: 1042: 1036: 999: 995: 985: 971: 926: 922: 912: 882:(1): 157–8. 879: 875: 863: 821: 817: 807: 771: 765: 716: 712: 706: 661: 657: 647: 628: 622: 603: 597: 547: 543: 489:(535): 535. 486: 483:BMC Genomics 482: 439: 429: 398: 393:forkhead box 388: 378: 372:chromosome 9 368: 333: 321: 301: 286: 276: 266: 251: 229: 210: 208: 179: 120:chromosome 2 99: 86: 81: 73: 65: 57: 51: 20: 18: 1771:Chimpanzees 1761:Primatology 1688:(non-human) 1652:(non-human) 1646:(non-human) 1553:Ian Redmond 1508:Dian Fossey 1455:P. pygmaeus 1416:G. beringei 1387:P. paniscus 1349:ape species 447:pseudogenes 262:amino acids 240:chromosomal 108:chromosomes 1755:Categories 1702:Monkey Day 1692:Great apes 1593:Personhood 1426:G. gorilla 1393:Chimpanzee 1368:H. sapiens 1269:Genome Res 996:PLOS Genet 523:References 432:. Several 336:Caspase 12 273:granulysin 112:great apes 105:chimpanzee 96:Background 29:chimpanzee 1583:Legal and 1445:P. abelii 1435:Orangutan 405:vitamin B 116:telomeres 1740:Category 1661:Bushmeat 1299:12421752 1250:15777644 1234:: 1–14. 1209:16674740 1201:16141373 1157:15905150 1071:16136132 1028:18421364 963:12552136 904:11571357 896:15218271 848:22922032 798:16136131 713:Genetica 698:27789843 582:23823723 515:32912141 454:See also 440:RPL23AP7 258:proteins 254:homologs 175:language 1656:Bigfoot 1639:Primate 1632:Related 1406:Gorilla 1181:Bibcode 1173:Science 1122:9756476 1102:Bibcode 1094:Science 1079:4420359 1051:Bibcode 1019:2278377 931:Bibcode 839:3511995 776:Bibcode 741:1098866 733:3333352 689:5546212 666:Bibcode 658:Science 573:3822165 552:Bibcode 506:7488140 442:. Many 389:FOXD4L1 317:cholera 1477:family 1473:Gibbon 1383:Bonobo 1347:Extant 1297:  1290:187549 1287:  1248:  1207:  1199:  1155:  1120:  1077:  1069:  1043:Nature 1026:  1016:  961:  954:298725 951:  902:  894:  846:  836:  796:  767:Nature 739:  731:  696:  686:  635:  610:  580:  570:  544:Nature 513:  503:  430:WASH2P 391:. The 381:. 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Index

DNA
chimpanzee
genome
Great Ape Genome Project

nominate subspecies
Central chimpanzee
Western chimpanzee
Nigeria-Cameroon chimpanzee
Eastern chimpanzee
population bottlenecks
Human
chimpanzee
chromosomes
great apes
telomeres
chromosome 2
1
4
5
9
12
15
16
17
18
Human genome project
common chimpanzee
forkhead-box P2
transcription factor

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