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provides user with two interactive views side by side. These views can display arbitrary combination of the four aforementioned visualization modes allowing to perceive their mutual relations. For instance, rotation of the atomic structure in direct space leads (if set so) to an instant update of the
1129:
Once the procedure is completed, the measured profile and the most similar simulated profile are displayed with the diffracted disk on the background. This allows the user to verify correctness of the automated estimate and easily check the similarity of other intensity profiles within the specified
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Various crystallographic analyses can be performed using the frequential image. If it is filtered so that only the information from a region close to a particular diffraction spot is used (the rest is set to zero), a filtered direct image obtained by inverse
Fourier transform then depicts only the
510:
etc. Such interconnections are implemented for each pair of the four available visualization modes. The electronic visualization allows to simplify understanding of widely used, yet less intuitive representations such as the inverse pole figure. For instance by drawing the coloured triangle of the
1294:
Since each half of the interface allows to specify one crystallographic plane, gpaGUI allows to calculate all the aforementioned crystallographic quantities including those which require two vectors. Precision and repeatability of the whole analysis relies on accuracy of the diffraction peak
634:
All three views in the user interface are functionally interconnected. If the content of one view is rotated by the user, the other views follow. If a crystallographic plane or direction is selected in one view, it is shown in other views and corresponding
1241:. Together with a vector of one crystallographic plane depicted in the image, they can be used to generate a 2D map interplanar distance of given plane. If two vectors of non-parallel planes are known, the method can be used to generate maps of
970:
Interactive diffraction image – allows the user to improve readability of the diffraction image by removing the beam-stopper, subtracting the background, revealing faint or spotty rings or by crystallographic identification of the depicted
1784:
Bär, Florian; Berger, Leopold; Jauer, Lucas; Kurtuldu, Güven; Schäublin, Robin; Schleifenbaum, Johannes H.; Löffler, Jörg F. (2019). "Laser additive manufacturing of biodegradable magnesium alloy WE43: A detailed microstructure analysis".
245:
CrysTBox is freely available on demand for non-commercial use by non-commercial subjects. The only safe way to download CrysTBox installers is via a request form on the official website. Commercial use is not allowed due to the license of
1735:
Ma, Jiqiang; Fan, Chenglong; Chen, Wenyuan; Tan, Hui; Zhu, Shengyu; Li, Qinglin; Yang, Jun (2022). "Core-shell structure in situ reinforced aluminum matrix composites: Microstructure, mechanical and tribological properties".
978:
Both, the diffraction image as well as diffraction profile can be used to select diffraction rings with a mouse click. The corresponding ring is then highlighted in both graphical representations and details are listed.
1295:
localization. To overcome inaccuracy of manual peak localization (with a mouse click), gpaGUI provides a possibility to process the input image with diffractGUI in order to accurately localize and index the peaks.
2059:
944:
or powder samples. It can be used to identify the diffraction rings, quantify the interplanar distances and thus characterize or identify the sample material. With known material, it can assist in microscope
1270:
Results of detailed analysis of point or region of interest. The point analysis allows the user to select any pixel of the visualized map to see exact values of the particular pixel and its closest
1600:
Schoeppler, Vanessa; Stier, Deborah; Best, Richard J.; Song, Chengyu; Turner, John; Savitzky, Benjamin H.; Ophus, Colin; Marcus, Matthew A.; Zhao, Shiteng; Bustillo, Karen; Zlotnikov, Igor (2021).
1546:
Cihova, M.; Schäublin, R.; Hauser, L.B.; Gerstl, S.S.A.; Simson, C.; Uggowitzer, P.J.; Löffler, J.F. (2018). "Rational design of a lean magnesium-based alloy with high age-hardening response".
1961:
Natalio, Filipe; Corrales, Tomas P.; Pierantoni, Maria; Rosenhek-Goldian, Irit; Cernescu, Adrian; Raguin, Emeline; Maria, Raquel; Cohen, Sidney R. (2021). "Characterization of Eocene flint".
2233:
Gora, Stephanie; Liang, Robert; Zhou, Y. Norman; Andrews, Susan (2018). "Settleable engineered titanium dioxide nanomaterials for the removal of natural organic matter from drinking water".
1229:
present in the original image. After performing desired calculations, the frequential representation can be transformed back to the original spatial domain using inverse
Fourier transform.
2479:
Klinger, Miloslav; PolĂvka, Leoš; Jäger, Aleš; Tyunina, Marina (2016-04-12). "Quantitative analysis of structural inhomogeneity in nanomaterials using transmission electron microscopy".
716:, they are designed to require minimal operator effort providing higher accuracy compared to manual evaluation. Four analytical tools can be used to index diffraction patterns, measure
435:
and functional interconnection. There are two visualization tools in the suite: one depicting single material while another being focused on intergrowths of two different materials.
974:
Diffraction profile – circular average of the image intensities depicts the peaks corresponding to the rings and their match with theoretical values known for given sample material.
720:(distances and angles), sample thickness etc. Despite the high level of automation, the user is able to control the whole process and perform individual steps manually if needed.
3249:
2004:
Marattukalam, Jithin James; Pacheco, Victor; Karlsson, Dennis; Riekehr, Lars; Lindwall, Johan; Forsberg, Fredrik; Jansson, Ulf; Sahlberg, Martin; Hjörvarsson, Björgvin (2020).
2349:"Heterogeneous precipitation mediated heterogeneous nanostructure enhances strength-ductility synergy in severely cryo-rolled and annealed CoCrFeNi2.1Nb0.2 high entropy alloy"
411:
such as elliptical distortion. If high-accuracy measurement is needed or if the distortion exceeds standard levels, appropriate tools should be applied prior to the analysis.
2630:
Klinger, M.; NÄ›mec, M.; PolĂvka, L.; Gärtnerová, V.; Jäger, A. (2015). "Automated CBED processing: Sample thickness estimation based on analysis of zone-axis CBED pattern".
604:. The user interface provides three views: two smaller views, each depicting one unit cell of selected material and orientation, and a larger view depicting an appropriate
1175:
859:
Compared to human evaluation, diffractGUI considers tens or even hundreds of diffraction spots at once and, therefore, can localize the pattern with sub-pixel precision.
1100:
pattern (CBED) in two beam approximation. The procedure is based on an automated extraction of the intensity profile across the diffracted disk in the following steps:
3232:
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2058:
Sun, Zhongji; Tan, Xipeng; Wang, Chengcheng; Descoins, Marion; Mangelinck, Dominique; Tor, Shu Beng; Jägle, Eric A.; Zaefferer, Stefan; Raabe, Dierk (2021).
2111:
Malinovskis, Paulius; Fritze, Stefan; Riekehr, Lars; von
Fieandt, Linus; Cedervall, Johan; Rehnlund, David; Nyholm, Leif; Lewin, Erik; Jansson, Ulf (2018).
3177:
1455:
CrysTBox is not distributed by any website aggregating various software installers or uninstallers. Installers downloaded from these sources can contain
3237:
1665:
Sandoval-Diaz, Luis; Plodinec, Milivoj; Ivanov, Danail; Poitel, Stéphane; Hammud, Adnan; Nerl, Hannah C.; Schlögl, Robert; Lunkenbein, Thomas (2020).
2163:
Zhao, Shiteng; Kad, Bimal; Remington, Bruce A.; LaSalvia, Jerry C.; Wehrenberg, Christopher E.; Behler, Kristopher D.; Meyers, Marc A. (2016-10-12).
1048:
3381:
392:. This allows for a real-time response to user interaction, but it does not cover advanced diffraction features like double diffraction covered by
1459:. Similarly, no additional software is required to uninstall CrysTBox. Any software pretending to do so has no connection to CrysTBox developer.
3197:
350:
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3187:
3134:
2784:
2746:
532:
342:
202:
3576:
3304:
3289:
3215:
2286:
Schuler, Jennifer D.; Rupert, Timothy J. (2017). "Materials selection rules for amorphous complexion formation in binary metallic alloys".
1380:
1233:
planes corresponding to the selected diffraction spot. Moreover, due to its complex nature, the frequential image can be used to calculate
1097:
820:
779:
556:
855:
Crystal lattice orientation is determined and diffraction reflections are identified using theoretical parameters of the sample material.
3648:
2060:"Reducing hot tearing by grain boundary segregation engineering in additive manufacturing: example of an AlxCoCrFeNi high-entropy alloy"
544:
1352:
916:
708:
processing of diffraction patterns and high-resolution transmission electron microscope images. Since the tools employ algorithms of
162:, CrysTBox makes routine crystallographic analyses simpler, faster and more accurate compared to human evaluators. The high level of
3663:
3326:
3159:
3012:
2962:
1316:
1072:
3314:
3309:
3207:
3182:
3149:
2705:
2347:
Sunkari, U.; Reddy, S. R.; Rathod, B. D. S.; Kumar, S. S. Satheesh; Saha, R.; Chatterjee, S.; Bhattacharjee, P. P. (2020-04-08).
1370:
904:
880:
318:
151:
2868:
HĂżtch, M.J.; Snoeck, E.; Kilaas, R. (1998). "Quantitative measurement of displacement and strain fields from HREM micrographs".
3668:
3386:
3371:
3351:
520:
389:
3089:
3154:
2997:
1246:
314:
2592:
Yuen, HK; Princen, J; Illingworth, J; Kittler, J (1990). "Comparative study of Hough
Transform methods for circle finding".
3621:
1340:
1163:
647:
Interface of two aluminum lattices in ÎŁ5 misorientation shown in four available visualization modes of CrysTBox IfaceViewer
3331:
3294:
3139:
338:
1259:
Visualization of a selected quantity (input image, filtered image or one of the maps mentioned above) allowing to select
3658:
3609:
3169:
2955:
966:
The results can be further processed and visualized in two interactive, functionally interconnected graphical elements:
393:
2918:
643:
or calculate the list of planes and directions which are parallel or nearly parallel in the two misoriented materials.
396:, even though some phenomena caused by multiple electron-matter interactions are visualized by CrysTBox - for instance
1328:
330:
210:
2675:"Random Sample Consensus: A Paradigm for Model Fitting with Applications to Image Analysis and Automated Cartography"
2113:"Synthesis and characterization of multicomponent (CrNbTaTiW)C films for increased hardness and corrosion resistance"
664:
3356:
3274:
652:
175:
1667:"Visualizing the importance of oxide-metal phase transitions in the production of synthesis gas over Ni catalysts"
3653:
1895:"Electron microscopy characterization of the fuel-cladding interaction in medium burnup annular fast reactor MOX"
1435:
1375:
1222:
1000:
764:
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186:
676:
3643:
3581:
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with a series of profiles automatically simulated for given material, reflection and specified thickness range.
624:
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476:
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298:
167:
3571:
640:
3284:
3220:
3094:
3053:
1839:
Hong, Zuliang; Morrison, Alasdair P. C.; Zhang, Hongtao; Roberts, Steve G.; Grant, Patrick S. (2017-12-04).
1420:
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812:
709:
155:
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1226:
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749:
503:
432:
310:
267:
194:
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3299:
1893:
Cappia, F.; Winston, A.; Miller, B.; Kombaiah, B.; Teng, F.; Murray, D.; Frazer, D.; Harp, J.M. (2021).
1256:
Diffractogram preview allowing to select one diffraction spot corresponding to a crystallographic plane.
1060:
568:
334:
326:
214:
206:
185:
CrysTBox is being developed in the
Laboratory of electron microscopy at the Institute of Physics of the
171:
1841:"Development of a Novel Melt Spinning-Based Processing Route for Oxide Dispersion-Strengthened Steels"
3484:
3043:
2809:
2305:
2242:
2176:
1970:
1906:
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1613:
1555:
1218:
1203:. It allows to generate 2D maps of various crystallographic quantities using high-resolution images.
480:
868:
511:
inverse pole figure into the stereographic projection or to the more intuitive 3D atomic structure.
3449:
3434:
3341:
3336:
3279:
3144:
3126:
3058:
3048:
2992:
2978:
1024:
790:
451:
CellViewer allows to visualize the sample material in four modes widely used in material research:
428:
378:
322:
283:
279:
108:
2800:
Allen, Samuel M. (1981). "Foil thickness measurements from convergent-beam diffraction patterns".
1252:
Graphical user interface of gpaGUI is vertically divided into two halves, each of which contains:
1151:
3520:
3099:
3063:
2697:
2539:
2404:
Nakayama, Kei; Ishikawa, Ryo; Kobayashi, Shunsuke; Shibata, Naoya; Ikuhara, Yuichi (2020-09-08).
2329:
2295:
2142:
2090:
2035:
2006:"Development of process parameters for selective laser melting of a Zr-based bulk metallic glass"
1940:
1870:
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1264:
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1221:
with the size equal to the original image. Crystallographically, it can be seen as an artificial
605:
302:
258:
Besides education, CrysTBox is mainly used in research with fields of application spanning from
1139:
988:
3464:
3459:
2885:
2846:
HĂżtch, M.J. (1997). "Geometric phase analysis of high resolution electron microscope images".
2825:
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189:. For academic purposes, it is available for free. As of 2022, the suite has been deployed at
93:
293:
Institutions whose research was supported by CrysTBox include educational facilities such as
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2877:
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2734:
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2017:
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the disks are horizontally aligned, cropped out and profiles are measured across the disks,
3469:
2922:
1425:
1405:
1210:, the high-resolution image needs to be transformed into frequential representation using
1105:
941:
816:
798:
713:
159:
2527:
983:
Examples of patrtial and final results presented via interactive diffraction image of MgO
2813:
2309:
2246:
2180:
1974:
1910:
1682:
1617:
1559:
237:
widely used in the community and offers interconnection with other scientific software.
154:
images via highly accurate automated analysis and interactive visualization. Relying on
3424:
3038:
2674:
2438:
2405:
2381:
2348:
2207:
2164:
1215:
757:
601:
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275:
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Individual steps of automated procedure illustrated on diffraction pattern of titanium
3637:
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3104:
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2146:
2094:
2039:
1944:
1822:
1765:
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1238:
959:
quantification of the diffraction profile and estimation of its background intensity,
849:
838:
834:
397:
271:
3551:
2514:
Lowe, David G. (2004). "Distinctive Image
Features from Scale-Invariant Keypoints".
2333:
1874:
174:
crystallographic analysis accessible even for non-crystallographers allowing for an
3561:
3525:
3419:
3409:
3084:
3033:
2643:
1299:
Examples of 2D maps generated using gpaGUI from high resolution image of magnesium.
1181:
Comparison of measured (blue) and simulated (green) profile for thickness of 139 nm
1112:
753:
636:
263:
234:
2701:
2317:
2078:
1982:
1919:
1894:
1749:
1567:
515:
Examples of various usage of visualization modes with magnesium as sample material
502:
simulated diffraction pattern. If any diffraction spot is selected, corresponding
2165:"Directional amorphization of boron carbide subjected to laser shock compression"
2129:
2112:
1798:
1691:
1666:
3505:
3439:
3429:
2731:
Large-Angle
Convergent-Beam Electron Diffraction Applications to Crystal Defects
2022:
2005:
1271:
946:
827:
745:
404:
2421:
2364:
1602:"Crystallization by Amorphous Particle Attachment: On the Evolution of Texture"
3586:
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3002:
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1840:
1504:
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385:
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50:
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1575:
1512:
3454:
3109:
2915:
2189:
1491:
Klinger, Miloslav (2017-07-07). "More features, more tools, more CrysTBox".
1234:
507:
366:
2659:
2447:
2390:
2216:
1814:
1643:
1626:
1601:
182:
can take advantage of advanced functionalities for comprehensive analyses.
2738:
2693:
2557:
Atherton, T.J.; Kerbyson, D.J. (1999). "Size invariant circle detection".
1278:
can be outlined in the map allowing to enumerate its statistical details:
286:, water cleaning technologies or characterization of 50 million years old
26:
3022:
2462:
1111:
the transmitted and diffracted disks are localized and the reflection is
940:
RingGUI allows for an automated processing of ring diffraction images of
612:
488:
484:
455:
374:
728:
584:
3566:
3510:
3192:
2263:
1456:
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362:
40:
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1936:
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of the two structures. The interface can be visualized in four modes:
3530:
1430:
1287:
1225:
of the original image depicting intensity peaks corresponding to the
1134:
Individual steps of automated thickness estimation of titanium sample
842:
370:
247:
81:
150:
of computer tools designed to accelerate material research based on
2300:
1088:
932:
1191:
1190:
1087:
931:
727:
583:
442:
287:
2942:
3515:
1279:
962:
identification of the rings in the image (peaks in the profile).
756:
individual diffraction spots and measure interplanar angles and
2951:
2406:"Dislocation and oxygen-release driven delithiation in Li2MnO3"
1499:(4). International Union of Crystallography (IUCr): 1226–1234.
494:
inverse pole figure (defined part of stereographic projection).
2932:
2769:
Introduction to
Conventional Transmission Electron Microscopy
2487:(3). International Union of Crystallography (IUCr): 762–770.
1199:
The tool called gpaGUI provides an interactive interface for
1054:
Background and beam-stopper removed with faint rings revealed
2908:
1532:. Fyzikálnà ústav Akademie věd České republiky. 2021-11-16.
1529:
2927:
1096:
Sample thickness can be estimated using twoBeamGUI from a
423:
functional relations and provide better understanding of
266:. Among others, the suite was employed in development of
131:
1104:
diffraction disk radius is determined using multi-scale
2673:
Martin A. Fischler & Robert C. Bolles (June 1981).
1851:(2). Springer Science and Business Media LLC: 604–612.
233:
is freely available for academic purposes, it supports
2522:(2). Springer Science and Business Media LLC: 91–110.
538:
Diffraction pattern with selected reflections (planes)
2933:
Institute of
Physics of the Czech Academy of Sciences
786:
The input image is processed in the following steps:
760:
in picometric precision. The input image may depict:
2416:(1). Springer Science and Business Media LLC: 4452.
2359:(1). Springer Science and Business Media LLC: 6056.
3544:
3493:
3402:
3395:
3262:
3206:
3168:
3125:
3118:
3072:
3021:
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2106:
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1206:Since the geometric phase analysis is performed in
407:imperfections, but does not provide adjustment for
127:
117:
107:
99:
87:
77:
59:
49:
793:with accordance to the settings and image nature (
630:bulk representation (up to several hundred atoms).
403:The analytical tools provide correction for scale
166:together with sub-pixel precision and interactive
2724:
2722:
2720:
2718:
1595:
1593:
1290:, minimum, maximum and total area of the polygon.
826:The strongest detections are selected across the
562:Stereographic projection with inverse pole figure
197:in more than 90 countries supporting research of
2762:
2760:
2758:
1386:High-resolution transmission electron microscopy
1078:Comparison of experimental and theoretical rings
736:DiffractGUI allows for an automated analysis of
592:The ifaceViewer allows for visualization of two
2625:
2623:
2474:
2472:
2169:Proceedings of the National Academy of Sciences
1956:
1954:
3377:Serial block-face scanning electron microscopy
3080:Detectors for transmission electron microscopy
1888:
1886:
1884:
1524:
1522:
1486:
1484:
1482:
1480:
1478:
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811:of diffraction reflections at various scales (
724:diffractGUI - HRTEM and diffraction processing
639:are stated. The tool also allows to highlight
2963:
2863:
2861:
2841:
2839:
1541:
1539:
1214:. Mathematically, the frequential image is a
841:to the set of the strongest detections using
487:of crystallographic planes and directions to
8:
2228:
2226:
2158:
2156:
550:3D atomic structure with inverse pole figure
19:
2053:
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2049:
1834:
1832:
1274:. If analysis of broader area is needed, a
949:. The input image is processed as follows:
3399:
3122:
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2948:
1845:Metallurgical and Materials Transactions A
1779:
1777:
1775:
1121:the profile across the diffracted disk is
39:
18:
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2128:
2021:
1918:
1856:
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1700:
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1358:Map of X component of displacement vector
1322:Filtered image of plane (0 1 0)
439:cellViewer - single crystal visualization
381:are installed together with the toolbox.
337:or US national laboratories (NL) such as
2516:International Journal of Computer Vision
1084:twoBeamGUI - sample thickness estimation
526:3D atomic structure with selected planes
2711:from the original on December 10, 2014.
1472:
1448:
1297:
1132:
981:
861:
744:of single crystal or limited number of
645:
580:ifaceViewer - intergrowth visualization
513:
596:materials and their interface such as
1530:"CrysTBox - Crystallographic Toolbox"
922:Reflections identified for zone axis
910:Lattice basis and parameters measured
203:Lawrence Berkeley National Laboratory
7:
3616:
2943:Inorganic Crystal Structure Database
1381:Convergent beam electron diffraction
1346:Map of XX component of strain tensor
1169:Disks aligned with profiles measured
1098:convergent beam electron diffraction
780:convergent beam electron diffraction
415:Crystallographic visualization tools
325:as well as research institutes like
928:ringGUI - ring diffraction analysis
815:typically used for spot detection,
2808:(2). Informa UK Limited: 325–335.
2528:10.1023/b:visi.0000029664.99615.94
2481:Journal of Applied Crystallography
1493:Journal of Applied Crystallography
1334:Map of (0 1 0) d-spacing
748:. It is able to determine crystal
14:
3013:Timeline of microscope technology
1187:gpaGUI - geometric phase analysis
886:30 strongest reflections detected
3615:
3604:
3603:
1371:Transmission electron microscope
1351:
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1047:
1035:
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987:
956:localization of the ring center,
915:
903:
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879:
867:
700:Automated analysis of TEM images
687:
675:
663:
651:
567:
555:
543:
531:
519:
319:Nanyang Technological University
152:transmission electron microscope
25:
3372:Precession electron diffraction
2916:Request form to obtain CrysTBox
1738:Journal of Alloys and Compounds
388:used in cellViewer is based on
250:used for CrysTBox compilation.
229:As a scientific tool, CrysTBox
2771:. Cambridge University Press.
2644:10.1016/j.ultramic.2014.12.006
805:for direct space images etc.).
732:User interface of diffractGUI.
588:User interface of ifaceViewer.
315:Indian Institute of Technology
178:. Simultaneously, experienced
16:Free crystallographic software
1:
2938:Crystallography Open Database
2882:10.1016/s0304-3991(98)00035-7
2767:De Graef, Marc (2003-03-27).
2729:Morniroli, Jean Paul (2004).
2571:10.1016/s0262-8856(98)00160-7
2318:10.1016/j.actamat.2017.08.042
2079:10.1016/j.actamat.2020.116505
1983:10.1016/j.chemgeo.2021.120427
1920:10.1016/j.jnucmat.2021.152922
1750:10.1016/j.jallcom.2022.163613
1568:10.1016/j.actamat.2018.07.054
1092:User interface of twoBeamGUI.
670:Wire model of both unit cells
447:User interface of cellViewer.
357:Limitations and disadvantages
2606:10.1016/0262-8856(90)90059-e
2565:(11). Elsevier BV: 795–803.
2461:Dave Mitchell (2022-02-05).
2235:Chemical Engineering Journal
2130:10.1016/j.matdes.2018.03.068
1899:Journal of Nuclear Materials
1799:10.1016/j.actbio.2019.05.056
1692:10.1016/j.jechem.2020.03.013
394:dynamical diffraction theory
390:kinematic diffraction theory
2876:(3). Elsevier BV: 131–146.
2023:10.1016/j.addma.2020.101124
1671:Journal of Energy Chemistry
658:3D model of both unit cells
331:Chinese Academy of Sciences
211:Chinese Academy of Sciences
123:Free for non-commercial use
3685:
3649:Science education software
3357:Immune electron microscopy
3275:Annular dark-field imaging
3090:Everhart–Thornley detector
2594:Image and Vision Computing
2559:Image and Vision Computing
2463:"Ellipse fitting analysis"
2422:10.1038/s41467-020-18285-z
2365:10.1038/s41598-020-63038-z
936:User interface of ringGUI.
848:Lengths and angles of the
776:nanodiffraction pattern or
704:CrysTBox offers tools for
254:Notable research and users
176:interdisciplinary research
3599:
3511:Hitachi High-Technologies
2928:Czech Academy of Sciences
2822:10.1080/01418618108239412
2600:(1). Elsevier BV: 71–77.
2493:10.1107/s1600576716003800
2255:10.1016/j.cej.2017.10.058
1858:10.1007/s11661-017-4398-x
1702:21.11116/0000-0006-4374-C
1505:10.1107/s1600576717006793
1436:Czech Academy of Sciences
1376:Selected area diffraction
1195:User interface of gpaGUI.
765:selected area diffraction
373:Compiler. Therefore, 1-2
187:Czech Academy of Sciences
144:Crystallographic Tool Box
33:
24:
3664:Computer vision software
3536:Thermo Fisher Scientific
3362:Geometric phase analysis
3250:Aberration-Corrected TEM
2802:Philosophical Magazine A
2777:10.1017/cbo9780511615092
2733:. Taylor & Francis.
2294:. Elsevier BV: 196–205.
2241:. Elsevier BV: 638–649.
1677:. Elsevier BV: 178–186.
1554:. Elsevier BV: 214–229.
1396:Electron crystallography
1391:Geometric phase analysis
1201:geometric phase analysis
637:crystallographic indices
499:Graphical user interface
477:stereographic projection
299:University of California
3285:Charge contrast imaging
3095:Field electron emission
2190:10.1073/pnas.1604613113
2073:. Elsevier BV: 116505.
2016:. Elsevier BV: 101124.
1969:. Elsevier BV: 120427.
1905:. Elsevier BV: 152922.
1744:. Elsevier BV: 163613.
1421:Difference of gaussians
1411:Artificial intelligence
1227:crystallographic planes
953:beam-stopper detection,
813:difference of Gaussians
710:artificial intelligence
682:Interface cross section
641:coincident site lattice
504:crystallographic planes
282:), resistant coatings,
156:artificial intelligence
3669:Visualization software
3475:Thomas Eugene Everhart
2638:. Elsevier BV: 88–95.
2123:. Elsevier BV: 51–62.
2117:Materials & Design
2010:Additive Manufacturing
1793:. Elsevier BV: 36–49.
1627:10.1002/adma.202101358
1612:(37). Wiley: 2101358.
1196:
1093:
937:
742:high-resolution images
733:
589:
448:
351:Lawrence Livermoore NL
311:University of Waterloo
270:(including 3D printed
268:additive manufacturing
195:educational facilities
3480:Vernon Ellis Cosslett
3300:Dark-field microscopy
2739:10.1201/9781420034073
2694:10.1145/358669.358692
2410:Nature Communications
1267:for further analysis.
1194:
1091:
1018:Ring centre localized
1006:Beam-stopper detected
935:
850:lattice basis vectors
771:high-resolution image
731:
587:
446:
335:Fraunhofer Institutes
327:Max Planck Institutes
215:Fraunhofer Institutes
207:Max Planck Institutes
65:; 9 years ago
3485:Vladimir K. Zworykin
3135:Correlative light EM
3044:Electron diffraction
1042:Beam-stopper removed
738:diffraction patterns
343:Lawrence Berkeley NL
63:9 December 2014
3659:Electron microscopy
3450:Manfred von Ardenne
3435:Gerasimos Danilatos
3342:Electron tomography
3337:Electron holography
3280:Cathodoluminescence
3059:Secondary electrons
3049:Electron scattering
2993:Electron microscopy
2979:Electron microscopy
2848:Scanning Microscopy
2814:1981PMagA..43..325A
2310:2017AcMat.140..196S
2247:2018ChEnJ.334..638G
2181:2016PNAS..11312088Z
2175:(43): 12088–12093.
1975:2021ChGeo.58220427N
1911:2021JNuM..55152922C
1683:2020JEnCh..50..178S
1618:2021AdM....3301358S
1560:2018AcMat.158..214C
1223:diffraction pattern
694:Bulk representation
621:of both unit cells,
615:of both unit cells,
574:Inverse pole figure
467:diffraction pattern
429:graphical interface
323:University of Tokyo
284:laser shock peening
280:high-entropy alloys
262:to archaeology and
180:material scientists
21:
3572:Digital Micrograph
3178:Environmental SEM
3100:Field emission gun
3064:X-ray fluorescence
2921:2021-11-21 at the
2353:Scientific Reports
1787:Acta Biomaterialia
1606:Advanced Materials
1284:standard deviation
1265:region of interest
1197:
1094:
1030:Background removed
938:
734:
590:
449:
303:Uppsala University
3631:
3630:
3595:
3594:
3465:Nestor J. Zaluzec
3460:Maximilian Haider
3258:
3257:
2786:978-0-521-62006-2
2748:978-2-901483-05-2
1416:Fourier transform
1401:Crystal structure
1261:point of interest
1212:Fourier transform
1130:thickness range.
803:Fourier transform
718:lattice constants
627:of the interface,
506:are shown in the
425:experimental data
409:image distortions
365:to a stand-alone
307:Oxford University
219:Oxford University
137:
136:
94:Microsoft Windows
3676:
3654:Science software
3619:
3618:
3607:
3606:
3415:Bodo von Borries
3400:
3160:Photoemission EM
3123:
2972:
2965:
2958:
2949:
2912:
2911:
2909:Official website
2894:
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2865:
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1963:Chemical Geology
1958:
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1331:
1319:
1307:
1276:polygonal region
1208:frequency domain
1178:
1166:
1154:
1142:
1075:
1066:Rings identified
1063:
1051:
1039:
1027:
1015:
1003:
991:
919:
907:
895:
883:
871:
823:disk detection).
691:
679:
667:
655:
619:wire-frame model
602:grain boundaries
571:
559:
547:
535:
523:
471:reciprocal space
460:atomic structure
384:The diffraction
260:nuclear research
89:Operating system
73:
71:
66:
55:Miloslav Klinger
43:
29:
22:
3684:
3683:
3679:
3678:
3677:
3675:
3674:
3673:
3644:Crystallography
3634:
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3632:
3627:
3591:
3540:
3489:
3470:Ondrej Krivanek
3391:
3254:
3202:
3164:
3150:Liquid-Phase EM
3114:
3073:Instrumentation
3068:
3026:
3017:
2981:
2976:
2923:Wayback Machine
2907:
2906:
2903:
2898:
2897:
2870:Ultramicroscopy
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2632:Ultramicroscopy
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2288:Acta Materialia
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2110:
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2102:
2067:Acta Materialia
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1548:Acta Materialia
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1426:Hough transform
1406:Computer vision
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1106:Hough transform
1086:
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1019:
1016:
1007:
1004:
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942:polycrystalline
930:
923:
920:
911:
908:
899:
898:Regular lattice
896:
887:
884:
875:
872:
835:regular lattice
817:Hough transform
799:noise reduction
726:
714:computer vision
702:
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462:(direct space),
441:
431:emphasize user
417:
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160:computer vision
132:crystbox.fzu.cz
69:
67:
64:
60:Initial release
45:
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3577:Direct methods
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3425:Ernst G. Bauer
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2901:External links
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3501:Carl Zeiss AG
3499:
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3198:Ultrafast SEM
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3155:Low-energy EM
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2200:
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2033:
2029:
2024:
2019:
2015:
2011:
2007:
2000:
1997:
1992:
1988:
1984:
1980:
1976:
1972:
1968:
1964:
1957:
1955:
1951:
1946:
1942:
1938:
1934:
1930:
1926:
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1298:
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1277:
1273:
1272:neighbourhood
1269:
1266:
1262:
1258:
1255:
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1136:
1133:
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1120:
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1103:
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1101:
1099:
1090:
1083:
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1069:
1062:
1057:
1050:
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1038:
1033:
1026:
1021:
1014:
1009:
1002:
997:
990:
985:
982:
980:
973:
969:
968:
967:
961:
958:
955:
952:
951:
950:
948:
943:
934:
927:
918:
913:
906:
901:
894:
889:
882:
877:
870:
865:
862:
860:
854:
852:are measured.
851:
847:
844:
840:
836:
832:
829:
825:
822:
818:
814:
810:
807:
804:
800:
796:
792:
791:Preprocessing
789:
788:
787:
781:
778:
775:
772:
769:
766:
763:
762:
761:
759:
755:
751:
747:
743:
739:
730:
723:
721:
719:
715:
711:
707:
699:
690:
685:
678:
673:
666:
661:
654:
649:
646:
644:
642:
638:
629:
626:
625:cross section
623:
620:
617:
614:
611:
610:
609:
607:
603:
599:
598:crystal twins
595:
586:
579:
570:
565:
558:
553:
546:
541:
534:
529:
522:
517:
514:
512:
509:
505:
500:
493:
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486:
482:
478:
475:
472:
468:
464:
461:
457:
454:
453:
452:
445:
438:
436:
434:
433:interactivity
430:
426:
422:
414:
412:
410:
406:
401:
399:
398:Kikuchi lines
395:
391:
387:
382:
380:
376:
372:
368:
364:
356:
354:
352:
348:
344:
340:
336:
332:
328:
324:
320:
316:
312:
308:
304:
300:
296:
291:
289:
285:
281:
277:
273:
272:biodegradable
269:
265:
261:
253:
251:
249:
240:
238:
236:
232:
224:
222:
220:
216:
212:
208:
204:
200:
196:
192:
188:
183:
181:
177:
173:
169:
168:visualization
165:
161:
157:
153:
149:
145:
141:
133:
130:
126:
122:
120:
116:
112:
110:
106:
102:
98:
95:
92:
90:
86:
83:
80:
76:
62:
58:
54:
52:
48:
42:
32:
28:
23:
3620:
3608:
3562:EM Data Bank
3556:
3526:Nion Company
3420:Dennis Gabor
3410:Albert Crewe
3188:Confocal SEM
3085:Electron gun
3034:Auger effect
2873:
2869:
2851:
2847:
2805:
2801:
2795:
2768:
2730:
2685:
2681:
2668:
2635:
2631:
2597:
2593:
2587:
2562:
2558:
2552:
2519:
2515:
2509:
2484:
2480:
2456:
2413:
2409:
2399:
2356:
2352:
2342:
2291:
2287:
2281:
2238:
2234:
2172:
2168:
2120:
2116:
2070:
2066:
2013:
2009:
1999:
1966:
1962:
1902:
1898:
1848:
1844:
1790:
1786:
1741:
1737:
1674:
1670:
1660:
1609:
1605:
1551:
1547:
1496:
1492:
1451:
1293:
1251:
1247:displacement
1231:
1205:
1198:
1128:
1095:
977:
965:
939:
858:
785:
746:crystallites
735:
703:
633:
591:
497:
450:
419:In order to
418:
402:
383:
361:CrysTBox is
360:
339:Oak Ridge NL
292:
264:paleontology
257:
244:
241:Availability
235:file formats
228:
184:
172:quantitative
143:
139:
138:
100:Available in
51:Developer(s)
3506:FEI Company
3440:Harald Rose
3430:Ernst Ruska
3119:Microscopes
3027:with matter
3025:interaction
2264:10012/12609
1310:Input image
1145:Input image
994:Input image
947:calibration
874:Input image
828:scale space
750:orientation
594:misoriented
405:calibration
3638:Categories
3587:Multislice
3403:Developers
3263:Techniques
3008:Microscope
3003:Micrograph
2301:1708.02971
1467:References
845:algorithm.
795:resolution
481:projection
465:simulated
386:simulation
377:of MATLAB
367:installers
295:ETH Zurich
199:ETH Zurich
170:makes the
164:automation
113:Scientific
78:Written in
70:2014-12-09
36:Screenshot
3455:Max Knoll
3110:Stigmator
2890:0304-3991
2830:0141-8610
2682:Comm. ACM
2652:0304-3991
2614:0262-8856
2579:0262-8856
2544:221242327
2536:0920-5691
2501:1600-5767
2430:2041-1723
2373:2045-2322
2326:1359-6454
2273:1385-8947
2199:0027-8424
2147:103441835
2139:0264-1275
2095:228880026
2087:1359-6454
2040:213366256
2032:2214-8604
1991:0009-2541
1945:233835199
1929:0022-3115
1867:1073-5623
1823:167220852
1807:1742-7061
1766:245719646
1758:0925-8388
1719:216467746
1711:2095-4956
1652:236777450
1636:0935-9648
1584:139448116
1576:1359-6454
1513:1600-5767
1235:amplitude
809:Detection
758:distances
706:automated
606:interface
508:unit cell
421:visualize
379:libraries
3610:Category
3557:CrysTBox
3545:Software
3216:Cryo-TEM
3023:Electron
2919:Archived
2854:: 53–66.
2706:Archived
2660:25544679
2448:32901015
2391:32269272
2334:20661118
2217:27733513
1875:58942346
1815:31132536
1644:34337782
1364:See also
767:pattern,
613:3D model
485:3D space
456:3D model
363:compiled
347:Idaho NL
274:alloys,
191:research
140:CrysTBox
20:CrysTBox
3622:Commons
3270:4D STEM
3243:4D STEM
3221:Cryo-ET
3193:SEM-XRF
3183:CryoSEM
3140:Cryo-EM
2998:History
2810:Bibcode
2439:7479600
2382:7142141
2306:Bibcode
2243:Bibcode
2208:5087058
2177:Bibcode
1971:Bibcode
1937:1782045
1907:Bibcode
1679:Bibcode
1614:Bibcode
1556:Bibcode
1457:malware
1216:complex
1123:matched
1113:indexed
146:) is a
128:Website
119:License
103:English
68: (
3567:EMsoft
3552:CASINO
3531:TESCAN
3396:Others
3295:cryoEM
2986:Basics
2888:
2828:
2783:
2745:
2702:972888
2700:
2658:
2650:
2612:
2577:
2542:
2534:
2499:
2446:
2436:
2428:
2389:
2379:
2371:
2332:
2324:
2271:
2215:
2205:
2197:
2145:
2137:
2093:
2085:
2038:
2030:
1989:
1943:
1935:
1927:
1873:
1865:
1821:
1813:
1805:
1764:
1756:
1717:
1709:
1650:
1642:
1634:
1582:
1574:
1511:
1431:RANSAC
1288:median
1243:strain
1219:matrix
971:rings.
843:RANSAC
427:, the
371:MATLAB
369:using
248:MATLAB
82:MATLAB
3521:Leica
3367:PINEM
3233:HRTEM
3228:EFTEM
2709:(PDF)
2698:S2CID
2678:(PDF)
2540:S2CID
2330:S2CID
2296:arXiv
2143:S2CID
2091:S2CID
2063:(PDF)
2036:S2CID
1941:S2CID
1871:S2CID
1819:S2CID
1762:S2CID
1715:S2CID
1648:S2CID
1580:S2CID
1443:Notes
1239:phase
754:index
288:flint
231:suite
225:Suite
148:suite
3582:IUCr
3516:JEOL
3387:WBDF
3382:WDXS
3332:EBIC
3327:EELS
3322:ECCI
3310:EBSD
3290:CBED
3238:STEM
2886:ISSN
2826:ISSN
2781:ISBN
2743:ISBN
2656:PMID
2648:ISSN
2610:ISSN
2575:ISSN
2532:ISSN
2497:ISSN
2444:PMID
2426:ISSN
2387:PMID
2369:ISSN
2322:ISSN
2269:ISSN
2213:PMID
2195:ISSN
2135:ISSN
2083:ISSN
2028:ISSN
1987:ISSN
1933:OSTI
1925:ISSN
1863:ISSN
1811:PMID
1803:ISSN
1754:ISSN
1707:ISSN
1640:PMID
1632:ISSN
1572:ISSN
1509:ISSN
1280:mean
1245:and
1237:and
821:CBED
819:for
797:and
740:and
712:and
349:and
193:and
158:and
109:Type
3352:FEM
3347:FIB
3315:TKD
3305:EDS
3208:TEM
3170:SEM
3145:EMP
2878:doi
2818:doi
2773:doi
2735:doi
2690:doi
2640:doi
2636:150
2602:doi
2567:doi
2524:doi
2489:doi
2434:PMC
2418:doi
2377:PMC
2361:doi
2314:doi
2292:140
2259:hdl
2251:doi
2239:334
2203:PMC
2185:doi
2173:113
2125:doi
2121:149
2075:doi
2071:204
2018:doi
1979:doi
1967:582
1915:doi
1903:551
1853:doi
1795:doi
1746:doi
1742:901
1697:hdl
1687:doi
1622:doi
1564:doi
1552:158
1501:doi
1263:or
839:fit
837:is
600:or
483:of
458:of
321:or
278:or
217:or
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3127:EM
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Text is available under the Creative Commons Attribution-ShareAlike License. Additional terms may apply.
