Knowledge (XXG)

Druglikeness

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Since the drug is transported in aqueous media like blood and intracellular fluid, it has to be sufficiently water-soluble in the absolute sense (i.e. must have a minimum chemical solubility in order to be effective). Solubility in water can be estimated from the number of
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donors vs. alkyl sidechains in the molecule. Low water solubility translates to slow absorption and action. Too many hydrogen bond donors, on the other hand, lead to low fat solubility, so that the drug cannot penetrate the cell membrane to reach the inside of the cell.
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Based on one definition, a drug-like molecule has a logarithm of partition coefficient (log P) between -0.4 and 5.6, molecular weight 160-480 g/mol, molar refractivity of 40–130, which is related to the volume and molecular weight of the molecule and has 20-70 atoms.
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Ghose AK, Viswanadhan VN, Wendoloski JJ (January 1999). "A knowledge-based approach in designing combinatorial or medicinal chemistry libraries for drug discovery. 1. A qualitative and quantitative characterization of known drug databases".
177:). Simple rules are not always accurate and may unnecessarily limit the chemical space to search: many best-selling drugs have features that cause them to score low on various druglikeness indices. Furthermore, 145:
have a good druglikeness. Natural toxins are used in pharmacological research to find out their mechanism of action, and if it could be exploited for beneficial purposes. Alkylnitro compounds tend to be
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Lipinski CA, Lombardo F, Dominy BW, Feeney PJ (March 2001). "Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings".
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Duffy FJ, Devocelle M, Shields DC (2015). "Computational Approaches to Developing Short Cyclic Peptide Modulators of Protein–Protein Interactions". In Zhou P, Huang J (eds.).
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Druglikeness indices are inherently limited tools. Druglikeness can be estimated for any molecule, and does not evaluate the actual specific effect that the drug achieves (
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Solubility in both water and fat, as an orally administered drug needs to pass through the intestinal lining after it is consumed, be carried in aqueous
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pharmacology at a given concentration. When associated with low clearance, high potency also allows for low total dose, which lowers the risk of
30:. It is estimated from the molecular structure before the substance is even synthesized and tested. A druglike molecule has properties such as: 352: 461: 47: 518: 433: 493: 203: 672: 511: 181:, which is biochemically selective, can destroy the pharmacological activity of a compound despite good druglikeness. 81: 601: 197: 114: 185: 667: 101:
is directly affected. The great majority of drugs on the market have molecular weights between 200 and 600
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Uetrecht J (January 2001). "Prediction of a new drug's potential to cause idiosyncratic reactions".
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and penetrate the lipid-based cell membrane to reach the inside of a cell. A model compound for the
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properties affect the usefulness of a designed molecule. However, several
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A traditional method to evaluate druglikeness is to check compliance of
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Smith GF (February 2011). "Designing drugs to avoid toxicity".
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for how "druglike" a substance is with respect to factors like
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OSIRIS Property Explorer: Prediction of druglikeness
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Current Opinion in Drug Discovery & Development
97:Molecular weight: The smaller the better, because 58:logD, or a logP vs pH curve may be used instead. 519: 500:free drug-likeness and bioactivity calculator 8: 647:Quantitative structure–activity relationship 526: 512: 504: 268: 216: 184:Druglikeness is not relevant for most 7: 416:. Progress in Medicinal Chemistry. 48:octanol-water partition coefficient 426:10.1016/B978-0-12-381290-2.00001-X 14: 22:is a qualitative concept used in 133:Substructures with known toxic, 1: 306:10.1016/S0169-409X(00)00129-0 204:Fragment-based lead discovery 337:10.1007/978-1-4939-2285-7_11 82:idiosyncratic drug reactions 56:the distribution coefficient 251:Uetrecht J (January 2008). 689: 542: 329:Computational Peptidology 78:non-specific, off-target 602:Lipinski's rule of five 198:Lipinski's rule of five 115:Lipinski's Rule of Five 16:Concept in drug design 607:Lipophilic efficiency 179:first-pass metabolism 162:and thus potentially 92:lipophilic efficiency 42:cellular membrane is 294:Adv. Drug Deliv. Rev 673:Medicinal chemistry 622:New chemical entity 612:Mechanism of action 536:medicinal chemistry 175:biological activity 496:2020-12-18 at the 257:Chem. Res. Toxicol 655: 654: 597:Ligand efficiency 391:10.1021/cc9800071 354:978-1-4939-2284-0 270:10.1021/tx700186p 160:alkylating agents 152:Michael acceptors 88:Ligand efficiency 63:biological target 680: 632:Pharmacokinetics 627:Pharmacodynamics 592:Enzyme inhibitor 577:Drug development 528: 521: 514: 505: 473: 472: 470: 469: 460:. Archived from 454: 448: 447: 409: 403: 402: 373: 367: 366: 324: 318: 317: 289: 283: 282: 272: 248: 242: 241: 221: 69:(high value of p 688: 687: 683: 682: 681: 679: 678: 677: 658: 657: 656: 651: 552:Bioavailability 538: 532: 498:Wayback Machine 482: 477: 476: 467: 465: 456: 455: 451: 436: 414:Prog. Med. Chem 411: 410: 406: 375: 374: 370: 355: 326: 325: 321: 291: 290: 286: 250: 249: 245: 223: 222: 218: 213: 194: 107:small molecules 74: 61:Potency at the 28:bioavailability 17: 12: 11: 5: 686: 684: 676: 675: 670: 668:Drug discovery 660: 659: 653: 652: 650: 649: 644: 639: 634: 629: 624: 619: 617:Mode of action 614: 609: 604: 599: 594: 589: 587:Drug targeting 584: 582:Drug discovery 579: 574: 569: 564: 559: 554: 549: 543: 540: 539: 533: 531: 530: 523: 516: 508: 502: 501: 491:molinspiration 488: 481: 480:External links 478: 475: 474: 449: 434: 404: 368: 353: 319: 284: 243: 215: 214: 212: 209: 208: 207: 201: 193: 190: 111: 110: 95: 85: 72: 59: 15: 13: 10: 9: 6: 4: 3: 2: 685: 674: 671: 669: 666: 665: 663: 648: 645: 643: 642:Pharmacophore 640: 638: 635: 633: 630: 628: 625: 623: 620: 618: 615: 613: 610: 608: 605: 603: 600: 598: 595: 593: 590: 588: 585: 583: 580: 578: 575: 573: 570: 568: 567:Drug delivery 565: 563: 560: 558: 557:Chemogenomics 555: 553: 550: 548: 545: 544: 541: 537: 529: 524: 522: 517: 515: 510: 509: 506: 499: 495: 492: 489: 487: 484: 483: 479: 464:on 2014-07-26 463: 459: 453: 450: 445: 441: 437: 435:9780123812902 431: 427: 423: 419: 415: 408: 405: 400: 396: 392: 388: 384: 380: 372: 369: 364: 360: 356: 350: 346: 342: 338: 334: 330: 323: 320: 315: 311: 307: 303: 300:(1–3): 3–26. 299: 295: 288: 285: 280: 276: 271: 266: 262: 258: 254: 247: 244: 239: 235: 231: 227: 220: 217: 210: 205: 202: 199: 196: 195: 191: 189: 187: 182: 180: 176: 171: 169: 165: 161: 157: 153: 149: 144: 140: 136: 131: 127: 124: 123:hydrogen bond 118: 116: 108: 104: 100: 96: 93: 89: 86: 83: 79: 75: 68: 64: 60: 57: 53: 49: 45: 41: 37: 33: 32: 31: 29: 25: 21: 637:Pharmacology 466:. Retrieved 462:the original 452: 417: 413: 407: 385:(1): 55–68. 382: 378: 371: 328: 322: 297: 293: 287: 263:(1): 84–92. 260: 256: 246: 229: 225: 219: 183: 172: 168:carcinogenic 132: 128: 119: 112: 20:Druglikeness 19: 18: 572:Drug design 420:(1): 1–47. 379:J Comb Chem 232:(1): 55–9. 139:teratogenic 50:, known as 24:drug design 662:Categories 562:Drug class 534:Topics in 468:2014-08-27 345:10197/7392 211:References 154:, such as 40:lipophilic 186:biologics 164:mutagenic 148:irritants 135:mutagenic 99:diffusion 44:1-octanol 494:Archived 444:21315927 399:10746014 363:25555728 314:11259830 279:18052104 238:11727323 192:See also 143:poisons 103:daltons 67:potency 65:. High 442:  432:  397:  361:  351:  312:  277:  236:  206:(FBLD) 158:, are 156:enones 150:, and 200:(RO5) 36:blood 547:ADME 440:PMID 430:ISBN 395:PMID 359:PMID 349:ISBN 310:PMID 275:PMID 234:PMID 166:and 90:and 52:LogP 422:doi 387:doi 341:hdl 333:doi 302:doi 265:doi 137:or 664:: 438:. 428:. 418:50 393:. 381:. 357:. 347:. 339:. 308:. 298:46 296:. 273:. 261:21 259:. 255:. 228:. 170:. 73:50 71:IC 527:e 520:t 513:v 471:. 446:. 424:: 401:. 389:: 383:1 365:. 343:: 335:: 316:. 304:: 281:. 267:: 240:. 230:4 109:. 94:. 84:.

Index

drug design
bioavailability
blood
lipophilic
1-octanol
octanol-water partition coefficient
LogP
the distribution coefficient
biological target
potency
IC50
non-specific, off-target
idiosyncratic drug reactions
Ligand efficiency
lipophilic efficiency
diffusion
daltons
small molecules
Lipinski's Rule of Five
hydrogen bond
mutagenic
teratogenic
poisons
irritants
Michael acceptors
enones
alkylating agents
mutagenic
carcinogenic
biological activity

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