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Epimerox

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283: 759: 24: 608:-acetylglucosamine; this is the first enzyme described in which the substrate is present in both the catalytic and allosteric sites. Because epimerox targets the allosteric site of the bacterial 2-epimerase, low human toxicity is expected since the human 2-epimerase does not have this site. 975: 639:
to the compound (resistance frequency of <10). Thus, epimerox is an antibiotic with low resistance potential. Therefore, 2-epimerase is a new antibiotic target to which resistance is a rare event. 2-Epimerase was discovered as a target because it was one of the enzymes in the
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Schuch, R.; Pelzek, A. J.; Raz, A.; Euler, C. W.; Ryan, P. A.; Winer, B. Y.; Farnsworth, A.; Bhaskaran, S. S.; Stebbins, C. E.; Xu, Y.; Clifford, A.; Bearss, D. J.; Vankayalapati, H.; Goldberg, A. R.; Fischetti, V. A. (2013). Aziz, Ramy K (ed.).
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receptor to function, the enzymes have evolved over a billion years to identify substrate receptors in the bacterial cell wall that the bacteria cannot change easily. These substrates are either part of the
690:. For bacteriophage to survive they need to replicate inside a bacterial cell and release their progeny phage when they are assembled using their lysin. Since lysins from bacteriophage that infect 72: 331: 160:
InChI=1S/C23H16Cl2N2O4S/c24-16-8-6-14(11-17(16)25)20-9-7-15(31-20)12-18-21(28)27(23(32)26-18)19(22(29)30)10-13-4-2-1-3-5-13/h1-9,11-12,19H,10H2,(H,26,32)(H,29,30)/b18-12+
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Epimerox is the name of two chemically closely related compounds that were found to block 2-epimerase and act as antibiotics by the described mechanism. Both are thio
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InChI=1S/C23H17BrN2O3S2/c24-16-8-6-15(7-9-16)20-11-10-17(31-20)13-18-21(27)26(23(30)25-18)19(22(28)29)12-14-4-2-1-3-5-14/h1-11,13,19H,12H2,(H,25,30)(H,28,29)/b18-13+
435: 176: 622: 553: 410: 151: 809: 522: 263: 960: 577: 538: 589: 1026: 770: 763: 778: 1031: 48:)-2-(4-((5-(3,4-dichlorophenyl)furan-2-yl)methylene)-5-oxo-2-thioxoimidazolidin-1-yl)-3-phenylpropanoic acid 307:)-2-(4-((5-(3-bromophenyl)thiophene-2-yl)methylene)-5-oxo-2-thioxoimidazolidin-1-yl)-3-phenylpropanoic acid 542: 351: 92: 636: 546: 295: 36: 862: 686:
enzyme called PlyG, which is produced by the Îł-bacteriophage to release its progeny from infected
613: 600:. Bacterial 2-epimerase differs from its human counterpart in that the bacterial molecule has an 976:"The structure of the major cell wall polysaccharide of Bacillus anthracis is species-specific" 827: 997: 942: 890: 371: 112: 913:"A structural basis for the allosteric regulation of non-hydrolysing UDP-GlcNAc 2-epimerases" 987: 932: 924: 880: 870: 604:
site. For enzymatic activity, the allosteric site needs to be occupied by the substrate UDP-
458: 199: 866: 937: 912: 885: 851:"Use of a Bacteriophage Lysin to Identify a Novel Target for Antimicrobial Development" 850: 645: 516: 257: 1015: 723: 700: 691: 680: 629: 396: 137: 641: 758: 282: 875: 974:
Choudhury, B; Leoff C; Saile E; Wilkins P; Quinn CP; et al. (22 Sep 2006).
720: 601: 501: 362: 242: 103: 928: 716: 695: 657: 561: 549:. It is a small molecule inhibitor compound that blocks the activity of the 23: 1001: 992: 946: 894: 726:. They differ in the residue on the thiohydantoin's carbon atom, which is ( 911:
Velloso, L.M.; Bhaskaran SS; Schuch R; Fischetti VA; Stebbins CE. (2008).
774: 810:"A New Era: The Fight Against Antibiotic-Resistant Pathogenic Bacteria" 668: 653: 618: 383: 124: 664: 550: 342: 83: 515:
Except where otherwise noted, data are given for materials in their
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Except where otherwise noted, data are given for materials in their
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Although epimerox was originally developed specifically to target
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or sugars linked to it. Deletion of both 2-epimerase genes in
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Clc1ccc(cc1Cl)-c(cc4)oc4\C=C(/C2=O)\NC(=S)N2C(C(O)=O)Cc3ccccc3
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Ac at a 3:2:1 ratio). This polysaccharide is only found in
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Brc4ccc(cc4)-c2ccc(s2)\C=C(/C1=O)\NC(=S)N1C(C(=O)O)Cc3ccccc3
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of a thiohydantoin–phenylalanine imine with different
828:"New Anthrax-Killing Antibiotic Also Eliminates MRSA" 812:. New York Academy of Sciences. December 21, 2011. 621:, it was found that it is also effective against 843: 841: 839: 837: 395: 136: 541:compound being developed by scientists at the 644:pathway for synthesizing an essential neutral 821: 819: 8: 762:The last step of the epimerox synthesis, a 635:No bacteria could be identified that were 370: 274: 111: 15: 991: 936: 906: 904: 884: 874: 963:. Bioscience Technology. April 12, 2013. 1022:Protein synthesis inhibitor antibiotics 801: 440: 415: 181: 156: 422:Key: FVHHZLXFIYKOPG-QGOAFFKASA-N 350: 163:Key: CZUADNIMRCRNSB-LDADJPATSA-N 91: 7: 738:-2-ylmethylene in one compound and ( 961:"MRSA-killing Antibiotic Developed" 386: 127: 826:Michael Manning (April 14, 2013). 769:The substances are prepared via a 14: 479: 470: 281: 223: 217: 211: 22: 788:. The active compounds are the 519:(at 25 Â°C , 100 kPa). 476: 260:(at 25 Â°C , 100 kPa). 558:-acetylglucosamine 2-epimerase 491: 485: 464: 235: 229: 205: 1: 750:-2-ylmethylene in the other. 876:10.1371/journal.pone.0060754 777:, which yields a mixture of 707:is lethal to the bacterium. 617:, the bacterium that causes 1048: 679:and is the receptor for a 539:broad-spectrum antibiotic 513: 451: 431: 406: 312: 294: 289: 280: 254: 192: 172: 147: 53: 35: 30: 21: 929:10.1038/sj.embor.7401154 771:Knoevenagel condensation 764:Knoevenagel condensation 694:bacteria must bind to a 628:(MRSA), and many other 993:10.1074/jbc.M605768200 766: 623:methicillin-resistant 564:enzyme that is called 543:Rockefeller University 761: 625:Staphylococcus aureus 576:2-Epimerase converts 547:Astex Pharmaceuticals 648:in the cell wall of 986:(38): 27932–27941. 867:2013PLoSO...860754S 719:derivatives of the 572:Mechanism of action 537:is an experimental 509: g·mol 277: 250: g·mol 18: 767: 614:Bacillus anthracis 523:Infobox references 275: 264:Infobox references 16: 597: 585: 531:Chemical compound 529: 528: 332:Interactive image 272:Chemical compound 270: 269: 73:Interactive image 1039: 1006: 1005: 995: 971: 965: 964: 957: 951: 950: 940: 908: 899: 898: 888: 878: 845: 832: 831: 823: 814: 813: 806: 595: 583: 508: 493: 487: 481: 478: 472: 466: 459:Chemical formula 399: 388: 374: 354: 334: 285: 278: 249: 237: 231: 225: 219: 213: 207: 200:Chemical formula 140: 129: 115: 95: 75: 26: 19: 1047: 1046: 1042: 1041: 1040: 1038: 1037: 1036: 1027:Organochlorides 1012: 1011: 1010: 1009: 973: 972: 968: 959: 958: 954: 910: 909: 902: 847: 846: 835: 825: 824: 817: 808: 807: 803: 798: 756: 713: 574: 532: 525: 520: 506: 496: 490: 484: 475: 469: 461: 447: 444: 439: 438: 427: 424: 423: 420: 414: 413: 402: 389: 377: 357: 337: 324: 308: 273: 266: 261: 247: 234: 228: 222: 216: 210: 202: 188: 185: 180: 179: 168: 165: 164: 161: 155: 154: 143: 130: 118: 98: 78: 65: 49: 12: 11: 5: 1045: 1043: 1035: 1034: 1032:Organobromides 1029: 1024: 1014: 1013: 1008: 1007: 966: 952: 923:(2): 199–205. 900: 833: 815: 800: 799: 797: 794: 755: 752: 712: 709: 646:polysaccharide 573: 570: 530: 527: 526: 521: 517:standard state 514: 511: 510: 504: 498: 497: 494: 488: 482: 473: 467: 462: 457: 454: 453: 449: 448: 446: 445: 442: 434: 433: 432: 429: 428: 426: 425: 421: 418: 417: 409: 408: 407: 404: 403: 401: 400: 392: 390: 382: 379: 378: 376: 375: 367: 365: 359: 358: 356: 355: 347: 345: 339: 338: 336: 335: 327: 325: 318: 315: 314: 310: 309: 298: 292: 291: 287: 286: 271: 268: 267: 262: 258:standard state 255: 252: 251: 245: 239: 238: 232: 226: 220: 214: 208: 203: 198: 195: 194: 190: 189: 187: 186: 183: 175: 174: 173: 170: 169: 167: 166: 162: 159: 158: 150: 149: 148: 145: 144: 142: 141: 133: 131: 123: 120: 119: 117: 116: 108: 106: 100: 99: 97: 96: 88: 86: 80: 79: 77: 76: 68: 66: 59: 56: 55: 51: 50: 39: 33: 32: 28: 27: 13: 10: 9: 6: 4: 3: 2: 1044: 1033: 1030: 1028: 1025: 1023: 1020: 1019: 1017: 1003: 999: 994: 989: 985: 981: 980:J. Biol. Chem 977: 970: 967: 962: 956: 953: 948: 944: 939: 934: 930: 926: 922: 918: 914: 907: 905: 901: 896: 892: 887: 882: 877: 872: 868: 864: 861:(4): e60754. 860: 856: 852: 844: 842: 840: 838: 834: 829: 822: 820: 816: 811: 805: 802: 795: 793: 791: 787: 785: 781: 776: 772: 765: 760: 753: 751: 749: 745: 741: 737: 733: 729: 725: 724:phenylalanine 722: 718: 710: 708: 706: 702: 701:peptidoglycan 697: 693: 692:Gram-positive 689: 685: 682: 681:bacteriophage 678: 674: 670: 666: 663: 659: 655: 651: 647: 643: 638: 633: 631: 630:Gram-positive 627: 626: 620: 616: 615: 609: 607: 603: 599: 593: 587: 581: 571: 569: 567: 563: 559: 557: 552: 548: 544: 540: 536: 524: 518: 512: 505: 503: 500: 499: 463: 460: 456: 455: 450: 441: 437: 430: 416: 412: 405: 398: 394: 393: 391: 385: 381: 380: 373: 369: 368: 366: 364: 361: 360: 353: 352:ChEMBL3099318 349: 348: 346: 344: 341: 340: 333: 329: 328: 326: 322: 317: 316: 311: 306: 302: 297: 293: 288: 284: 279: 265: 259: 253: 246: 244: 241: 240: 204: 201: 197: 196: 191: 182: 178: 171: 157: 153: 146: 139: 135: 134: 132: 126: 122: 121: 114: 110: 109: 107: 105: 102: 101: 94: 93:ChEMBL3099046 90: 89: 87: 85: 82: 81: 74: 70: 69: 67: 63: 58: 57: 52: 47: 43: 38: 34: 29: 25: 20: 983: 979: 969: 955: 920: 916: 858: 854: 804: 789: 783: 779: 768: 747: 743: 739: 735: 731: 727: 714: 705:B. anthracis 704: 688:B. anthracis 687: 677:B. anthracis 676: 672: 661: 650:B. anthracis 649: 642:biosynthetic 634: 624: 612: 610: 605: 598:-mannosamine 591: 586:-glucosamine 579: 575: 565: 555: 534: 533: 313:Identifiers 304: 300: 54:Identifiers 45: 41: 568:for short. 566:2-epimerase 452:Properties 193:Properties 1016:Categories 796:References 721:amino acid 632:bacteria. 602:allosteric 502:Molar mass 363:ChemSpider 319:3D model ( 296:IUPAC name 243:Molar mass 104:ChemSpider 60:3D model ( 37:IUPAC name 775:aldehydes 754:Synthesis 748:thiophene 730:)-5-(3,4- 717:hydantoin 711:Chemistry 696:cell wall 637:resistant 562:epimerase 276:Epimerox 17:Epimerox 1002:16870610 947:18188181 917:EMBO Rep 895:23593301 855:PLOS ONE 732:dichloro 594:-acetyl- 582:-acetyl- 535:Epimerox 397:57994051 372:31124510 138:57994048 113:31128636 938:2246411 886:3622686 863:Bibcode 792:forms. 786:isomers 746:phenyl) 742:)-5-(3- 734:phenyl) 619:anthrax 384:PubChem 125:PubChem 1000:  945:  935:  893:  883:  551:enzyme 507:513.42 436:SMILES 343:ChEMBL 290:Names 248:487.35 177:SMILES 84:ChEMBL 31:Names 744:bromo 736:furan 684:lysin 560:, an 411:InChI 321:JSmol 152:InChI 62:JSmol 998:PMID 943:PMID 891:PMID 782:and 590:UDP- 578:UDP- 554:UDP- 545:and 988:doi 984:281 933:PMC 925:doi 881:PMC 871:doi 669:Man 658:Gal 654:Glu 588:to 387:CID 128:CID 1018:: 996:. 982:. 978:. 941:. 931:. 919:. 915:. 903:^ 889:. 879:. 869:. 857:. 853:. 836:^ 818:^ 665:Ac 477:Br 474:17 468:23 218:Cl 215:16 209:23 1004:. 990:: 949:. 927:: 921:9 897:. 873:: 865:: 859:8 830:. 790:E 784:Z 780:E 740:E 728:E 673:N 671:- 667:: 662:N 660:- 656:: 652:( 606:N 596:D 592:N 584:D 580:N 556:N 495:2 492:S 489:3 486:O 483:2 480:N 471:H 465:C 323:) 305:E 303:, 301:S 299:( 236:S 233:4 230:O 227:2 224:N 221:2 212:H 206:C 64:) 46:E 44:, 42:S 40:(

Index


IUPAC name
JSmol
Interactive image
ChEMBL
ChEMBL3099046
ChemSpider
31128636
PubChem
57994048
InChI
SMILES
Chemical formula
Molar mass
standard state
Infobox references

IUPAC name
JSmol
Interactive image
ChEMBL
ChEMBL3099318
ChemSpider
31124510
PubChem
57994051
InChI
SMILES
Chemical formula
Molar mass

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