Knowledge (XXG)

Histone H2A.Z

Source πŸ“

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Bargaje R., Alam P., Patowary A., Sarkar M., Ali T., Gupta S., Garg M., Singh M., Purkanti R., Scaria V., Sivasubbu S., Brahmachari V., Pillai B. (2012) Proximity of H2A.Z containing nucleosome to the transcription start site influences gene expression levels in the mammalian liver and brain. Nucleic
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fiber is further compacted by the interaction of a linker histone, H1, with the DNA between the nucleosomes to form higher order chromatin structures. The H2AFZ gene encodes a replication-independent member of the histone H2A family that is distinct from other members of the family.
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H2A, and is used to mediate the thermosensory response, and is essential to perceive the ambient temperature. Nucleosome occupancy of H2A.Z decreases with temperature, and in vitro assays show that H2A.Z-containing nucleosomes wrap DNA more tightly than canonical H2A nucleosomes in
68: 1695:"Coronary arteries from human cardiac allografts with chronic rejection contain oligoclonal T cells: persistence of identical clonally expanded TCR transcripts from the early post-transplantation period (endomyocardial biopsies) to chronic rejection (coronary arteries)" 1169:.(Cell 140: 136–147, 2010) However, some of the other studies (Nat. Genet. 41, 941–945 and Genes Dev., 21, 1519–1529) have shown that incorporation of H2A.Z in nucleosomes, when it co-occurs with H3.3, makes them weaker. 1177:
The positioning of H2A.Z containing nucleosomes around transcription start sites has been shown to affect the downstream gene expression. Recent evidence also points to a role for H2A.Z in repressing a subset of
1823:"B-cell development in progressively transformed germinal centers: similarities and differences compared with classical germinal centers and lymphocyte-predominant Hodgkin disease" 2163: 1728:
Pasqualucci L, Neri A, Baldini L, et al. (2000). "BCL-6 mutations are associated with immunoglobulin variable heavy chain mutations in B-cell chronic lymphocytic leukemia".
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Studies in mice have shown that this particular histone is required for embryonic development and indicate that lack of functional histone H2A leads to embryonic lethality.
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Suto RK, Clarkson MJ, Tremethick DJ, Luger K (2001). "Crystal structure of a nucleosome core particle containing the variant histone H2A.Z".
1343:"Proximity of H2A.Z containing nucleosome to the transcription start site influences gene expression levels in the mammalian liver and brain" 1263: 1245: 2256: 334: 1033: 1026: 311: 1325: 1621:
Hatch CL, Bonner WM (1996). "An upstream region of the H2AZ gene promoter modulates promoter activity in different cell types".
1751:"Acetylation of HIV-1 Tat by CBP/P300 increases transcription of integrated HIV-1 genome and enhances binding to core histones" 1232: 1211: 1485:"Sequence of cDNAs for mammalian H2A.Z, an evolutionarily diverged but highly conserved basal histone H2A isoprotein species" 1858:"Evidence for a novel polymorphism affecting both N-linked glycosylation and ligand binding of the IgG receptor IIIB (CD16)" 1228: 233: 208: 65: 1207: 150: 1183: 347: 246: 340: 239: 2230: 2136: 1652:"Transcriptional Activation of the Integrated Chromatin-Associated Human Immunodeficiency Virus Type 1 Promoter" 863: 158: 844: 2067:"Regulation of HIV-1 gene expression by histone acetylation and factor recruitment at the LTR promoter" 2223: 2129: 1982: 1904: 1446:
Jason LJ, Moore SC, Lewis JD, et al. (2002). "Histone ubiquitination: a tagging tail unfolds?".
222: 1392:"Chromatin Dynamics and the RNA Exosome Function in Concert to Regulate Transcriptional Homeostasis" 137: 1005: 958: 592: 2118:
provides an overview of all the structure information available in the PDB for Human Histone H2A.Z
1590:"Chromosomal mapping of the human histone gene H2AZ to 4q24 by fluorescence in situ hybridization" 1809: 1471: 182: 1971:"Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences" 1009: 984: 954: 933: 2096: 2053: 2010: 1957: 1922: 1879: 1844: 1801: 1772: 1737: 1716: 1681: 1638: 1609: 1576: 1543: 1526:
Kato S, Sekine S, Oh SW, et al. (1995). "Construction of a human full-length cDNA bank".
1514: 1463: 1423: 1372: 1304: 599: 130: 58: 2207: 2172:: 2.6 A CRYSTAL STRUCTURE OF A NUCLEOSOME CORE PARTICLE CONTAINING THE VARIANT HISTONE H2A.Z 2086: 2078: 2043: 2035: 2024:"Pericentric heterochromatin becomes enriched with H2A.Z during early mammalian development" 2000: 1990: 1947: 1912: 1869: 1834: 1793: 1762: 1706: 1671: 1663: 1630: 1601: 1568: 1535: 1504: 1496: 1455: 1413: 1403: 1362: 1354: 1294: 1161: 427: 358: 302: 257: 585: 178: 402: 141:, H2A.Z-1, H2A.z, H2A/z, H2AZ, H2A histone family member Z, H2A.Z variant histone 1, H2AFZ 1874: 1857: 1986: 1908: 1418: 1391: 1367: 1342: 41: 2091: 2066: 2048: 2023: 2005: 1970: 1917: 1892: 1676: 1651: 1509: 1484: 1299: 1282: 733: 728: 723: 707: 702: 697: 692: 687: 671: 666: 661: 656: 651: 646: 641: 2250: 2115: 1634: 1539: 628: 1475: 162: 2203: 1813: 420: 199: 1123:. Nucleosomes consist of approximately 146 base pairs(bp) of DNA wrapped around a 1408: 186: 1711: 1694: 1268:
National Center for Biotechnology Information, U.S. National Library of Medicine
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National Center for Biotechnology Information, U.S. National Library of Medicine
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RNA polymerase II cis-regulatory region sequence-specific DNA binding
17: 2191: 1936:"Enhancement of the p300 HAT activity by HIV-1 Tat on chromatin DNA" 1589: 1556: 1893:"Histone variant H2A.Z is required for early mammalian development" 1186:, as well as mediation higher order chromatin structure formation. 1797: 1127:
octamer, which includes pairs of each of the four core histones (
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RNA polymerase II core promoter sequence-specific DNA binding
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Bargaje R, Alam MP, Patowary A, et al. (October 2012).
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Strausberg RL, Feingold EA, Grouse LH, et al. (2003).
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Slachta CA, Jeevanandam V, Goldman B, et al. (2000).
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positive regulation of transcription by RNA polymerase II
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Rangasamy D, Berven L, Ridgway P, Tremethick DJ (2003).
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Faast R, Thonglairoam V, Schulz TC, et al. (2001).
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are basic nuclear proteins that are responsible for the
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Yamamoto K, Sugita N, Kobayashi T, et al. (2001).
1283:"The human histone H2A.Z gene. Sequence and regulation" 1821:
BrΓ€uninger A, Yang W, Wacker HH, et al. (2001).
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El Kharroubi A, Piras G, Zensen R, Martin MA (1998).
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Deng L, Wang D, de la Fuente C, et al. (2001).
998: 977: 947: 926: 2065:Lusic M, Marcello A, Cereseto A, Giacca M (2004). 1749:Deng L, de la Fuente C, Fu P, et al. (2001). 1224: 1222: 1220: 1203: 1201: 1199: 1588:Popescu N, Zimonjic D, Hatch C, Bonner W (1994). 1326:"Entrez Gene: H2AFZ H2A histone family, member Z" 357: 256: 27:Protein-coding gene in the species Homo sapiens 1229:GRCm38: Ensembl release 89: ENSMUSG00000037894 2231: 2137: 8: 1208:GRCh38: Ensembl release 89: ENSG00000164032 2238: 2224: 2144: 2130: 2122: 759: 624: 398: 297: 194: 76: 2090: 2047: 2004: 1994: 1951: 1916: 1873: 1838: 1766: 1710: 1675: 1508: 1417: 1407: 1366: 1298: 1320: 1318: 2159: 1195: 1173:Gene Expression and Chromatin Structure 724:cellular response to estradiol stimulus 31: 362: 323: 318: 261: 220: 215: 7: 2188: 2186: 1875:10.1034/j.1399-0039.2001.057004363.x 1339:Acids Research (Epub ahead of print) 672:protein heterodimerization activity 2210:. You can help Knowledge (XXG) by 995: 974: 944: 923: 899: 880: 854: 835: 809: 790: 580: 498: 436: 415: 25: 2190: 2162: 1281:Hatch CL, Bonner WM (Oct 1990). 598: 591: 584: 346: 339: 333: 310: 245: 238: 232: 207: 40: 609:More reference expression data 564:More reference expression data 1: 2262:Human chromosome 4 gene stubs 1918:10.1016/S0960-9822(01)00329-3 1300:10.1016/S0021-9258(18)77243-8 331: 230: 1975:Proc. Natl. Acad. Sci. U.S.A 1635:10.1016/0167-4781(95)00223-5 1555:Hatch CL, Bonner WM (1995). 1540:10.1016/0378-1119(94)90433-2 1483:Hatch CL, Bonner WM (1988). 1409:10.1016/j.celrep.2015.10.030 2257:Genes on human chromosome 4 1712:10.4049/jimmunol.165.6.3469 2278: 2185: 488:mucosa of transverse colon 2157: 1264:"Mouse PubMed Reference:" 1246:"Human PubMed Reference:" 1072: 1067: 1063: 1056: 1040: 1034:Chr 3: 137.57 – 137.57 Mb 1021: 1002: 981: 970: 951: 930: 919: 906: 902: 887: 883: 874: 861: 857: 842: 838: 829: 816: 812: 797: 793: 784: 769: 762: 758: 742: 627: 623: 606: 583: 574: 561: 510: 501: 484:epithelium of nasopharynx 448: 439: 409: 401: 397: 380: 367: 330: 309: 300: 296: 279: 266: 229: 206: 197: 193: 148: 145: 135: 128: 123: 84: 79: 62: 57: 52: 48: 39: 34: 1596:(Submitted manuscript). 1563:(Submitted manuscript). 1840:10.1182/blood.V97.3.714 1573:10.1089/dna.1995.14.257 1027:Chr 4: 99.95 – 99.95 Mb 642:nucleosomal DNA binding 1996:10.1073/pnas.242603899 1953:10.1006/viro.2001.1129 1768:10.1006/viro.2000.0593 1623:Biochim. Biophys. Acta 1606:10.1006/geno.1994.1182 1347:Nucleic Acids Research 1158: 734:chromatin organization 1668:10.1128/mcb.18.5.2535 1501:10.1093/nar/16.3.1113 1152:Biological Importance 1101: 693:extracellular exosome 657:chromatin DNA binding 468:palpebral conjunctiva 2083:10.1093/emboj/cdg631 2040:10.1093/emboj/cdg160 325:Chromosome 3 (mouse) 223:Chromosome 4 (human) 80:List of PDB id codes 53:Available structures 1987:2002PNAS...9916899M 1909:2001CBio...11.1183F 472:germinal epithelium 464:gingival epithelium 460:ganglionic eminence 2198:This article on a 1460:10.1002/bies.10038 1359:10.1093/nar/gks665 1162:variant of histone 1160:Histone H2AZ is a 864:ENSMUSG00000037894 717:Biological process 681:Cellular component 635:Molecular function 2219: 2218: 2180: 2179: 1981:(26): 16899–903. 1786:Nat. Struct. Biol 1489:Nucleic Acids Res 1115:structure of the 1083: 1082: 1079: 1078: 1052: 1051: 1017: 1016: 992: 991: 966: 965: 941: 940: 915: 914: 896: 895: 870: 869: 851: 850: 825: 824: 806: 805: 754: 753: 619: 618: 615: 614: 570: 569: 557: 556: 495: 494: 393: 392: 292: 291: 187:H2AZ1 - orthologs 119: 118: 115: 114: 63:Ortholog search: 16:(Redirected from 2269: 2240: 2233: 2226: 2194: 2187: 2166: 2146: 2139: 2132: 2123: 2104: 2094: 2061: 2051: 2018: 2008: 1998: 1965: 1955: 1930: 1920: 1887: 1877: 1852: 1842: 1817: 1780: 1770: 1745: 1724: 1714: 1689: 1679: 1646: 1617: 1584: 1551: 1522: 1512: 1479: 1432: 1431: 1421: 1411: 1402:(8): 1610–1622. 1387: 1381: 1380: 1370: 1336: 1330: 1329: 1322: 1313: 1312: 1302: 1278: 1272: 1271: 1260: 1254: 1253: 1242: 1236: 1226: 1215: 1205: 1065: 1064: 1036: 1029: 1012: 996: 987: 975: 971:RefSeq (protein) 961: 945: 936: 924: 900: 881: 855: 836: 810: 791: 760: 625: 611: 602: 595: 588: 581: 566: 530:genital tubercle 514:ventricular zone 506: 504:Top expressed in 499: 452:ventricular zone 444: 442:Top expressed in 437: 416: 399: 389: 376: 365: 350: 343: 337: 326: 314: 298: 288: 275: 264: 249: 242: 236: 225: 211: 195: 189: 140: 133: 110: 77: 71: 50: 49: 44: 32: 21: 2277: 2276: 2272: 2271: 2270: 2268: 2267: 2266: 2247: 2246: 2245: 2244: 2183: 2181: 2176: 2173: 2167: 2153: 2150: 2112: 2107: 2077:(24): 6550–61. 2064: 2034:(7): 1599–607. 2021: 1968: 1933: 1890: 1862:Tissue Antigens 1855: 1820: 1783: 1748: 1727: 1692: 1656:Mol. Cell. Biol 1649: 1620: 1587: 1554: 1525: 1482: 1445: 1441: 1439:Further reading 1436: 1435: 1390:Rege M (2015). 1389: 1388: 1384: 1353:(18): 8965–78. 1340: 1337: 1333: 1324: 1323: 1316: 1293:(25): 15211–8. 1280: 1279: 1275: 1262: 1261: 1257: 1244: 1243: 1239: 1227: 1218: 1206: 1197: 1192: 1182:, derepressing 1092:encoded by the 1074:View/Edit Mouse 1069:View/Edit Human 1032: 1025: 1022:Location (UCSC) 1008: 1004: 983: 957: 953: 932: 845:ENSG00000164032 738: 712: 676: 662:protein binding 607: 597: 596: 590: 589: 562: 553: 548: 544: 540: 536: 532: 528: 524: 520: 516: 502: 491: 486: 482: 478: 476:trabecular bone 474: 470: 466: 462: 458: 454: 440: 384: 371: 363: 353: 352: 351: 344: 324: 301:Gene location ( 283: 270: 262: 252: 251: 250: 243: 221: 198:Gene location ( 149: 136: 129: 86: 64: 28: 23: 22: 15: 12: 11: 5: 2275: 2273: 2265: 2264: 2259: 2249: 2248: 2243: 2242: 2235: 2228: 2220: 2217: 2216: 2195: 2178: 2177: 2175: 2174: 2168: 2161: 2158: 2155: 2154: 2151: 2149: 2148: 2141: 2134: 2126: 2120: 2119: 2111: 2110:External links 2108: 2106: 2105: 2062: 2019: 1966: 1931: 1903:(15): 1183–7. 1888: 1853: 1818: 1792:(12): 1121–4. 1781: 1746: 1736:(20): 5644–8. 1725: 1705:(6): 3469–83. 1690: 1662:(5): 2535–44. 1647: 1629:(1–2): 59–62. 1618: 1585: 1561:DNA Cell Biol. 1552: 1523: 1495:(3): 1113–24. 1480: 1442: 1440: 1437: 1434: 1433: 1382: 1331: 1314: 1273: 1255: 1237: 1216: 1194: 1193: 1191: 1188: 1081: 1080: 1077: 1076: 1071: 1061: 1060: 1054: 1053: 1050: 1049: 1047: 1045: 1038: 1037: 1030: 1023: 1019: 1018: 1015: 1014: 1000: 999: 993: 990: 989: 979: 978: 972: 968: 967: 964: 963: 949: 948: 942: 939: 938: 928: 927: 921: 917: 916: 913: 912: 904: 903: 897: 894: 893: 885: 884: 878: 872: 871: 868: 867: 859: 858: 852: 849: 848: 840: 839: 833: 827: 826: 823: 822: 814: 813: 807: 804: 803: 795: 794: 788: 782: 781: 776: 771: 767: 766: 756: 755: 752: 751: 740: 739: 737: 736: 731: 726: 720: 718: 714: 713: 711: 710: 705: 700: 695: 690: 684: 682: 678: 677: 675: 674: 669: 664: 659: 654: 649: 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1861: 1833:(3): 714–9. 1830: 1826: 1789: 1785: 1758: 1754: 1733: 1729: 1702: 1698: 1659: 1655: 1626: 1622: 1600:(2): 333–5. 1597: 1593: 1564: 1560: 1531: 1527: 1492: 1488: 1451: 1447: 1399: 1396:Cell Reports 1395: 1385: 1350: 1346: 1334: 1290: 1286: 1276: 1267: 1258: 1249: 1240: 1176: 1172: 1171: 1159: 1155: 1151: 1150: 1107: 1103: 1102: 1093: 1085: 1084: 1006:NP_001303924 1003: 982: 959:NM_001316995 952: 931: 907: 888: 862: 843: 817: 798: 778: 773: 542:spermatocyte 426: 419: 385:137,572,683 372:137,570,248 146:External IDs 85: 29: 2152:PDB gallery 1287:J Biol Chem 1167:Arabidopsis 1117:chromosomal 1099:in humans. 652:DNA binding 550:neural tube 480:human penis 364:3|3 G3 284:99,950,355 271:99,948,086 124:Identifiers 2251:Categories 1897:Curr. Biol 1730:Cancer Res 1699:J. Immunol 1235:, May 2017 1214:, May 2017 1190:References 1121:eukaryotes 1113:nucleosome 708:chromosome 688:nucleosome 522:blastocyst 430:(ortholog) 167:HomoloGene 2202:on human 1448:BioEssays 1145:chromatin 1119:fiber in 1010:NP_058030 985:NP_002097 955:NM_016750 934:NM_002106 764:Orthologs 698:Barr body 175:GeneCards 2101:14657027 2058:12660166 2015:12477932 1962:11689053 1940:Virology 1927:11516949 1884:11380948 1849:11157489 1806:11101893 1777:11080476 1755:Virology 1742:11059755 1721:10975868 1594:Genomics 1476:39905043 1468:11835281 1428:26586442 1377:22821566 1231:– 1210:– 1109:Histones 1104:Function 1058:Wikidata 743:Sources: 546:epiblast 2116:PDBe-KB 1983:Bibcode 1905:Bibcode 1814:5966635 1686:9566873 1643:8605251 1614:8020992 1581:7880446 1548:7821789 1519:3344202 1419:4662874 1368:3467062 1309:1697587 1233:Ensembl 1212:Ensembl 1143:). The 1125:histone 1090:protein 876:UniProt 831:Ensembl 770:Species 749:QuickGO 703:nucleus 405:pattern 163:1888388 131:Aliases 2099:  2092:291826 2089:  2071:EMBO J 2056:  2049:152904 2046:  2028:EMBO J 2013:  2006:139241 2003:  1960:  1925:  1882:  1847:  1812:  1804:  1775:  1740:  1719:  1684:  1677:110633 1674:  1641:  1612:  1579:  1546:  1517:  1510:334740 1507:  1474:  1466:  1426:  1416:  1375:  1365:  1307:  1180:ncRNAs 1139:, and 1044:search 1042:PubMed 909:P0C0S6 890:P0C0S5 786:Entrez 576:BioGPS 538:embryo 534:thymus 526:embryo 456:embryo 155:142763 2206:is a 1827:Blood 1810:S2CID 1472:S2CID 1094:H2AZ1 1088:is a 819:51788 779:Mouse 774:Human 745:Amigo 428:Mouse 421:Human 368:Start 303:Mouse 267:Start 200:Human 179:H2AZ1 171:80218 138:H2AZ1 35:H2AZ1 18:H2AFZ 2208:stub 2200:gene 2170:1f66 2097:PMID 2054:PMID 2011:PMID 1958:PMID 1923:PMID 1880:PMID 1845:PMID 1802:PMID 1773:PMID 1738:PMID 1717:PMID 1682:PMID 1639:PMID 1627:1305 1610:PMID 1577:PMID 1544:PMID 1528:Gene 1515:PMID 1464:PMID 1424:PMID 1373:PMID 1305:PMID 1184:CUTs 1097:gene 800:3015 411:Bgee 359:Band 320:Chr. 263:4q23 258:Band 217:Chr. 151:OMIM 108:5CHL 104:5FUG 100:4NFT 96:4CAY 92:3WA9 88:1F66 69:RCSB 66:PDBe 2087:PMC 2079:doi 2044:PMC 2036:doi 2001:PMC 1991:doi 1948:doi 1944:289 1913:doi 1870:doi 1835:doi 1794:doi 1763:doi 1759:277 1707:doi 1703:165 1672:PMC 1664:doi 1631:doi 1602:doi 1569:doi 1536:doi 1532:150 1505:PMC 1497:doi 1456:doi 1414:PMC 1404:doi 1363:PMC 1355:doi 1295:doi 1291:265 1133:H2B 1129:H2A 381:End 280:End 183:OMA 159:MGI 59:PDB 2253:: 2095:. 2085:. 2075:22 2073:. 2069:. 2052:. 2042:. 2032:22 2030:. 2026:. 2009:. 1999:. 1989:. 1979:99 1977:. 1973:. 1956:. 1942:. 1938:. 1921:. 1911:. 1901:11 1899:. 1895:. 1878:. 1866:57 1864:. 1860:. 1843:. 1831:97 1829:. 1825:. 1808:. 1800:. 1788:. 1771:. 1757:. 1753:. 1734:60 1732:. 1715:. 1701:. 1697:. 1680:. 1670:. 1660:18 1658:. 1654:. 1637:. 1625:. 1608:. 1598:20 1592:. 1575:. 1565:14 1559:. 1542:. 1530:. 1513:. 1503:. 1493:16 1491:. 1487:. 1470:. 1462:. 1452:24 1450:. 1422:. 1412:. 1400:13 1398:. 1394:. 1371:. 1361:. 1351:40 1349:. 1345:. 1317:^ 1303:. 1289:. 1285:. 1266:. 1248:. 1219:^ 1198:^ 1141:H4 1137:H3 1135:, 1131:, 747:/ 387:bp 374:bp 286:bp 273:bp 181:; 177:: 173:; 169:: 165:; 161:: 157:; 153:: 106:, 102:, 98:, 94:, 90:, 2239:e 2232:t 2225:v 2214:. 2145:e 2138:t 2131:v 2103:. 2081:: 2060:. 2038:: 2017:. 1993:: 1985:: 1964:. 1950:: 1929:. 1915:: 1907:: 1886:. 1872:: 1851:. 1837:: 1816:. 1796:: 1790:7 1779:. 1765:: 1744:. 1723:. 1709:: 1688:. 1666:: 1645:. 1633:: 1616:. 1604:: 1583:. 1571:: 1550:. 1538:: 1521:. 1499:: 1478:. 1458:: 1430:. 1406:: 1379:. 1357:: 1328:. 1311:. 1297:: 1270:. 1252:. 305:) 202:) 185:: 20:)

Index

H2AFZ

PDB
PDBe
RCSB
1F66
3WA9
4CAY
4NFT
5FUG
5CHL
Aliases
H2AZ1
OMIM
142763
MGI
1888388
HomoloGene
80218
GeneCards
H2AZ1
OMA
H2AZ1 - orthologs
Human
Chromosome 4 (human)
Chr.
Chromosome 4 (human)
Chromosome 4 (human)
Genomic location for H2AZ1
Genomic location for H2AZ1

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