Knowledge (XXG)

Hemerythrin

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Friesner, R. A.; Baik, M.-H.; Gherman, B. F.; Guallar, V.; Wirstam, M.; Murphy, R. B.; Lippard, S. J. (2003). "How iron-containing proteins control dioxygen chemistry: a detailed atomic level description via accurate quantum chemical and mixed quantum mechanics/molecular mechanics calculations".
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each, although some species have dimeric, trimeric and tetrameric hemerythrins. Each subunit has a four-α-helix fold binding a binuclear iron centre. Because of its size hemerythrin is usually found in cells or "corpuscles" in the blood rather than free floating.
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Chow ED, Liu OW, O'Brien S, Madhani HD (September 2007). "Exploration of whole-genome responses of the human AIDS-associated yeast pathogen Cryptococcus neoformans var grubii: nitric oxide stress and body temperature".
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Karlsen, O.A., Ramsevik, L., Bruseth, L.J., Larsen, Ø., Brenner, A., Berven, F.S., Jensen, H.B. and Lillehaug, J.R. (2005). "Characterization of a prokaryotic haemerythrin from the methanotrophic bacterium
340:-binding protein found in the muscles of marine invertebrates. Hemerythrin and myohemerythrin are essentially colorless when deoxygenated, but turn a violet-pink in the oxygenated state. 355:, and hemerythrin do not refer to the heme group (only found in globins). Instead, these names are derived from the Greek word for blood. Hemerythrin may also contribute to 959: 710: 173: 1059: 570:, unlike hemoglobin which has a very high affinity for CO. Hemerythrin's low affinity for CO poisoning reflects the role of hydrogen-bonding in the binding of O 559:. Cooperative binding is achieved by interactions between subunits: the oxygenation of one subunit increases the affinity of a second unit for oxygen. 121: 1052: 810:"Widespread Distribution in Pathogenic Bacteria of Di-Iron Proteins That Repair Oxidative and Nitrosative Damage to Iron-Sulfur Centers" 620:(Filobasidiella neoformans) that contains haemerythrin/HHE cation-binding domains is also involved in nitric oxide response. A 630:
switches to living in environments with low oxygen concentrations; perhaps this protein acts as an oxygen store or scavenger.
1045: 509:). Then electrons are transferred from the ferrous ions to generate the binuclear ferric (Fe,Fe) centre with bound peroxide ( 501:
substrate. This proton-transfer result in the formation of a single oxygen atom (μ-oxo) bridge in oxy- and methemerythrin. O
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residues. Hemerythrin and myohemerythrin are often described according to oxidation and ligation states of the iron center:
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D. M. Kurtz, Jr. "Dioxygen-binding Proteins" in Comprehensive Coordination Chemistry II 2003, Volume 8, Pages 229–260.
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consists of a pair of iron centres. The iron atoms are bound to the protein through the carboxylate side chains of a
859:"Structure, function and evolution of the hemerythrin-like domain superfamily: Hemerythrin-like Domain Superfamily" 626:
protein containing this domain, iron-sulfur cluster repair protein ScdA, has been noted to be important when the
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Hemerythrin/HHE (H-HxxxE-HxxxH-HxxxxD) proteins found in bacteria are implicated in signal transduction and
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Hemerythrin typically exists as a homooctamer or heterooctamer composed of α- and β-type subunits of 13–14
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occurs as a duplicated domain in hemerythrins, myohemerythrins and related proteins. This domain binds
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Alvarez-Carreño, Claudia; Alva, Vikram; Becerra, Arturo; Lazcano, Antonio (April 2018).
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Overton TW, Justino MC, Li Y, Baptista JM, Melo AM, Cole JA, et al. (2008).
90: 1107: 1102: 552: 471: 778: 678: 637:. More distantly related ones include H-HxxxE-H-HxxxE proteins (including the 634: 352: 348: 315: 307: 638: 408: 404: 400: 311: 205: 17: 937: 894: 843: 786: 696: 130: 1160: 1090: 627: 490: 482: 324: 285: 85: 980: 825: 505:
binds to the pentacoordinate Fe centre at the vacant coordination site (
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in hemerythrin, but can bind other metals in related proteins, such as
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to oxygen, making it roughly 1/4 as efficient as hemoglobin. In some
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Hemerythrin homooctamer with a single monomer highlighted in yellow.
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by hemerythrin is accompanied by two-electron oxidation of the di
1156: 587: 489:). One iron is hexacoordinate and another is pentacoordinate. A 481:
Deoxyhemerythrin contains two high-spin ferrous ions bridged by
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Hemerythrin does not, as the name might suggest, contain a
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Active site of hemerythrin before and after oxygenation.
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hemerythrin. It is also found in the NorA protein from
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This article incorporates text from the public domain
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The mechanism of dioxygen binding is unusual. Most O
1116: 1083: 967:Stenkamp, R.E. (1994). "Dioxygen and hemerythrin". 187: 167: 149: 144: 120: 108: 96: 84: 72: 64: 59: 32: 610:, which suggests a different set-up for its metal 555:though, hemerythrin shows cooperative binding of O 1020:– PDB structure of azido-met myohemerythrin from 566:(CO) is actually lower than its affinity for O 1053: 606:, this protein is a regulator of response to 497:but also functions as a proton donor to the O 347:. The names of the blood oxygen transporters 8: 958:: CS1 maint: multiple names: authors list ( 709:: CS1 maint: multiple names: authors list ( 1060: 1046: 1038: 547:Unlike hemoglobin, most hemerythrins lack 141: 884: 874: 833: 686: 413: 1011:– PDB structure of oxyhemerythrin from 653: 44:Singly oxygenated hemerythrin protein. 951: 702: 517:Quaternary structure and cooperativity 466:is roughly described in this diagram: 209:Trimeric Hemerythrin Protein Complex ( 29: 578:Hemerythrin/HHE cation-binding domain 7: 582:The hemerythrin/HHE cation-binding 379:carriers operate via formation of 25: 661:Coates, C.J., Decker, H. (2017). 395:, or -OOH). The site that binds O 930:10.1111/j.1742-4658.2005.04663.x 38: 462:(OOH) complex. The binding of O 1001:structure of deoxyhemerythrin 729:10.1016/B0-08-043748-6/08171-8 1: 751:10.1016/S0010-8545(02)00284-9 441:Fe—OH—Fe— (any other ligand) 383:, but hemerythrin holds the O 145:Available protein structures: 273: 246: 1210: 1154: 262: 235: 779:10.1007/s00294-007-0147-9 679:10.1007/s00018-016-2326-7 562:Hemerythrin affinity for 140: 37: 914:Methylococcus capsulatus 407:as well as through five 617:Cryptococcus neoformans 33:Hemerythrin-like family 536: 476: 220: 1077:Non-heme iron protein 1034:entry for hemerythrin 623:Staphylococcus aureus 524: 474: 284:'red') is an 208: 1194:Respiratory pigments 1144:Tyrosine hydroxylase 1022:Themiste zostericola 745:. 238–239: 267–290. 458:centre to produce a 1134:Iron–sulfur protein 981:10.1021/cr00027a008 826:10.1128/JB.01733-07 667:Cell. Mol. Life Sci 645:(H-HExxE-H-HxxxE). 603:Cupriavidus necator 597:Nereis diversicolor 549:cooperative binding 361:tissue regeneration 301:marine invertebrate 299:) transport in the 1129:Inositol oxygenase 537: 493:group serves as a 477: 381:dioxygen complexes 363:in certain worms. 318:, and in a single 221: 1152: 1151: 1024:(sipunculid worm) 1013:Themiste dyscrita 1005:(sipunculid worm) 1003:Themiste dyscrita 924:(10): 2428–2440. 614:. A protein from 448: 447: 371:binding mechanism 283: 271: 257:'blood', 256: 244: 203: 202: 199: 198: 194:structure summary 16:(Redirected from 1201: 1096:Bacterioferritin 1069:Carrier proteins 1062: 1055: 1048: 1039: 984: 963: 957: 949: 899: 898: 888: 878: 876:10.1002/pro.3374 854: 848: 847: 837: 805: 799: 798: 761: 755: 754: 743:Coord. Chem. Rev 737: 731: 721: 715: 714: 708: 700: 690: 658: 534: 420:deoxy (reduced) 414: 291:responsible for 278: 276: 266: 264: 251: 249: 239: 237: 218: 142: 53: 42: 30: 21: 1209: 1208: 1204: 1203: 1202: 1200: 1199: 1198: 1184:Metalloproteins 1179:Protein domains 1169: 1168: 1167: 1153: 1148: 1112: 1079: 1073:metalloproteins 1066: 991: 966: 950: 910: 907: 905:Further reading 902: 863:Protein Science 856: 855: 851: 807: 806: 802: 773:(3–4): 137–48. 763: 762: 758: 739: 738: 734: 722: 718: 701: 660: 659: 655: 651: 580: 573: 569: 564:carbon monoxide 558: 526: 519: 504: 500: 495:bridging ligand 465: 453: 450:The uptake of O 444:met (oxidized) 436:oxy (oxidized) 398: 394: 386: 378: 373: 370: 357:innate immunity 339: 298: 210: 55: 45: 28: 27:InterPro Family 23: 22: 15: 12: 11: 5: 1207: 1205: 1197: 1196: 1191: 1189:Iron compounds 1186: 1181: 1171: 1170: 1150: 1149: 1147: 1146: 1141: 1136: 1131: 1126: 1120: 1118: 1114: 1113: 1111: 1110: 1105: 1100: 1099: 1098: 1087: 1085: 1081: 1080: 1067: 1065: 1064: 1057: 1050: 1042: 1036: 1035: 1025: 1015: 1006: 990: 989:External links 987: 986: 985: 975:(3): 715–726. 964: 906: 903: 901: 900: 869:(4): 848–860. 849: 820:(6): 2004–13. 800: 756: 732: 716: 673:(2): 293–317. 652: 650: 647: 643:F-box proteins 579: 576: 571: 567: 556: 518: 515: 502: 498: 479: 478: 463: 451: 446: 445: 442: 438: 437: 434: 430: 429: 426: 422: 421: 418: 396: 392: 384: 376: 372: 368: 365: 337: 330:Myohemerythrin 296: 226:(also spelled 201: 200: 197: 196: 191: 185: 184: 171: 165: 164: 154: 147: 146: 138: 137: 124: 118: 117: 112: 106: 105: 100: 94: 93: 88: 82: 81: 76: 70: 69: 66: 62: 61: 57: 56: 43: 35: 34: 26: 24: 14: 13: 10: 9: 6: 4: 3: 2: 1206: 1195: 1192: 1190: 1187: 1185: 1182: 1180: 1177: 1176: 1174: 1166: 1162: 1158: 1145: 1142: 1140: 1137: 1135: 1132: 1130: 1127: 1125: 1122: 1121: 1119: 1115: 1109: 1106: 1104: 1101: 1097: 1094: 1093: 1092: 1089: 1088: 1086: 1082: 1078: 1074: 1070: 1063: 1058: 1056: 1051: 1049: 1044: 1043: 1040: 1033: 1029: 1026: 1023: 1019: 1016: 1014: 1010: 1007: 1004: 1000: 996: 993: 992: 988: 982: 978: 974: 970: 965: 961: 955: 947: 943: 939: 935: 931: 927: 923: 919: 915: 909: 908: 904: 896: 892: 887: 882: 877: 872: 868: 864: 860: 853: 850: 845: 841: 836: 831: 827: 823: 819: 815: 811: 804: 801: 796: 792: 788: 784: 780: 776: 772: 768: 760: 757: 752: 748: 744: 736: 733: 730: 726: 720: 717: 712: 706: 698: 694: 689: 684: 680: 676: 672: 668: 664: 657: 654: 648: 646: 644: 641:) and animal 640: 636: 631: 629: 625: 624: 619: 618: 613: 609: 605: 604: 599: 598: 593: 589: 585: 577: 575: 565: 560: 554: 550: 545: 542: 533: 529: 523: 516: 514: 512: 508: 496: 492: 488: 484: 473: 469: 468: 467: 461: 460:hydroperoxide 457: 443: 440: 439: 435: 432: 431: 427: 424: 423: 419: 416: 415: 412: 410: 406: 402: 390: 389:hydroperoxide 382: 366: 364: 362: 359:and anterior 358: 354: 350: 346: 341: 335: 331: 327: 326: 321: 317: 313: 309: 305: 302: 294: 290: 287: 281: 275: 269: 260: 259:Ancient Greek 254: 248: 242: 233: 232:Ancient Greek 229: 225: 217: 213: 207: 195: 192: 190: 186: 183: 179: 175: 172: 170: 166: 162: 158: 155: 152: 148: 143: 139: 136: 132: 128: 125: 123: 119: 116: 113: 111: 107: 104: 101: 99: 95: 92: 89: 87: 83: 80: 77: 75: 71: 67: 63: 58: 52: 48: 41: 36: 31: 19: 1139:Lipoxygenase 1123: 1021: 1012: 1002: 972: 968: 954:cite journal 921: 917: 913: 866: 862: 852: 817: 813: 803: 770: 766: 759: 742: 735: 719: 705:cite journal 670: 666: 656: 632: 621: 615: 608:nitric oxide 601: 595: 581: 561: 546: 538: 510: 506: 486: 480: 449: 433:Fe—O—Fe—OOH 374: 342: 329: 323: 322:worm genus, 228:haemerythrin 227: 223: 222: 18:Haemerythrin 1124:Hemerythrin 1108:Transferrin 1103:Lactoferrin 814:J Bacteriol 767:Curr. Genet 553:brachiopods 316:brachiopods 308:sipunculids 224:Hemerythrin 68:Hemerythrin 60:Identifiers 1173:Categories 649:References 635:chemotaxis 405:aspartates 353:hemocyanin 349:hemoglobin 312:priapulids 286:oligomeric 157:structures 1165:IPR012312 1028:IPR002063 969:Chem. Rev 916:(Bath)". 639:E3 ligase 428:semi-met 425:Fe—OH—Fe 417:Fe—OH—Fe 409:histidine 401:glutamate 334:monomeric 268:romanized 241:romanized 103:PDOC00476 91:IPR035938 1161:InterPro 1091:Ferritin 1032:InterPro 946:11002682 938:15885093 895:29330894 844:18203837 795:10212964 787:17661046 697:27518203 628:organism 491:hydroxyl 483:hydroxyl 325:Magelona 274:erythrós 219:​) 174:RCSB PDB 86:InterPro 1117:nonheme 886:5866928 835:2258886 688:5219038 612:ligands 594:in the 592:cadmium 535:​ 485:group ( 456:ferrous 320:annelid 289:protein 282:  270::  263:ἐρυθρός 255:  243::  98:PROSITE 79:PF01814 54:​ 944:  936:  918:FEBS J 893:  883:  842:  832:  793:  785:  695:  685:  584:domain 293:oxygen 189:PDBsum 163:  153:  135:SUPFAM 65:Symbol 942:S2CID 791:S2CID 387:as a 332:is a 304:phyla 247:haîma 131:SCOPe 122:SCOP2 1159:and 1157:Pfam 1084:heme 1018:2MHR 1009:1HMO 995:1HMD 960:link 934:PMID 891:PMID 840:PMID 783:PMID 711:link 693:PMID 588:iron 532:1HMO 403:and 345:heme 280:lit. 253:lit. 236:αἷμα 216:1HMO 182:PDBj 178:PDBe 161:ECOD 151:Pfam 127:2HMZ 115:1HMO 110:CATH 74:Pfam 51:1HMO 999:PDB 977:doi 926:doi 922:272 881:PMC 871:doi 830:PMC 822:doi 818:190 775:doi 747:doi 725:doi 683:PMC 675:doi 541:kDa 528:PDB 513:). 391:(HO 306:of 212:PDB 169:PDB 47:PDB 1175:: 1163:: 1075:: 1071:, 1030:– 997:- 973:94 971:. 956:}} 952:{{ 940:. 932:. 920:. 889:. 879:. 867:27 865:. 861:. 838:. 828:. 816:. 812:. 789:. 781:. 771:52 769:. 707:}} 703:{{ 691:. 681:. 671:74 669:. 665:. 530:: 351:, 328:. 314:, 310:, 295:(O 277:, 265:, 261:: 250:, 238:, 234:: 230:; 214:: 180:; 176:; 159:/ 133:/ 129:/ 49:: 1061:e 1054:t 1047:v 983:. 979:: 962:) 948:. 928:: 897:. 873:: 846:. 824:: 797:. 777:: 753:. 749:: 727:: 713:) 699:. 677:: 572:2 568:2 557:2 511:C 507:B 503:2 499:2 487:A 464:2 452:2 397:2 393:2 385:2 377:2 369:2 367:O 338:2 336:O 297:2 20:)

Index

Haemerythrin

PDB
1HMO
Pfam
PF01814
InterPro
IPR035938
PROSITE
PDOC00476
CATH
1HMO
SCOP2
2HMZ
SCOPe
SUPFAM
Pfam
structures
ECOD
PDB
RCSB PDB
PDBe
PDBj
PDBsum
structure summary

PDB
1HMO
Ancient Greek
romanized

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