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and cellular organization and their implications for health and disease. During his Ph.D. and postdoc training, he developed algorithms to reconstruct the ancestral mammalian genome. His research group has recently pioneered a series of new machine learning methods for 3D epigenomics, comparative
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Zhou T, Zhang R, Jia D, Doty RT, Munday AD, Gao D, Xin L, Abkowitz JL, Duan Z*, and Ma J*. GAGE-seq concurrently profiles multiscale 3D genome organization and gene expression in single cells.
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Chen V, Yang M, Cui W, Kim JS, Talwalkar A*, and Ma J*. Applying interpretable machine learning in computational biology - pitfalls, recommendations and opportunities for new developments.
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Zhu X, Zhang Y, Wang Y, Tian D, Belmont AS, Swedlow JR, and Ma J. Nucleome
Browser: An integrative and multimodal data navigation platform for 4D Nucleome.
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Zhang Y, Boninsegna L, Yang M, Misteli T, Alber F, and Ma J. Computational methods for analysing multiscale 3D genome organization.
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Chidester B, Zhou T, Alam S, and Ma J. SPICEMIX enables integrative single-cell spatial modeling of cell identity.
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504:"Jian Ma receives CAREER award for large-scale Genomic Studies | Carl R. Woese Institute for Genomic Biology"
422:"Carnegie Mellon Heads New Center for Studying Structure of Cell Nucleus - News - Carnegie Mellon University"
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Zhang R, Zhou T, and Ma J. Ultrafast and interpretable single-cell 3D genome analysis with Fast-Higashi.
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370:"Jian Ma - Computational Biology Department - School of Computer Science - Carnegie Mellon University"
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Zhang R, Zhou T, and Ma J. Multiscale and integrative single-cell Hi-C analysis with
Higashi.
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Xiong K, Zhang R, and Ma J. scGHOST: Identifying single-cell 3D genome subcompartments.
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548:"John Simon Guggenheim Foundation | 2020 Guggenheim Fellowship winners announced"
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569:"Jian Ma Wins Guggenheim Fellowship - News - Carnegie Mellon University"
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genomics, spatial genomics, and single-cell analysis. He received an
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Fellows of the
American Association for the Advancement of Science
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Ray and
Stephanie Lane Computational Biology Department
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in
Computer Science. He is an elected Fellow of the
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528:"John Simon Guggenheim Foundation | Jian Ma"
394:"SCS Faculty Receive Endowed Professorships"
597:Carnegie Mellon School of Computer Science
398:Carnegie Mellon School of Computer Science
198:Professor of Computational Biology in the
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127:University of Illinois Urbana–Champaign
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355:"Jian Ma Webpage at Carnegie Mellon"
331:"Jian Ma - Google Scholar Citations"
450:"Extinct Genome Under Construction"
683:Carnegie Mellon University faculty
593:"Jian Ma Elected 2022 AAAS Fellow"
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206:. He is a faculty member in the
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688:University of Illinois faculty
567:Carnegie Mellon (2020-04-10).
466:10.1126/science.308.5727.1401b
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698:Machine learning researchers
693:American computer scientists
295:, 13(10):P798-807.E6, 2022.
239:Selected Recent Publications
16:American computer scientist
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204:Carnegie Mellon University
200:School of Computer Science
121:Carnegie Mellon University
669:indexed by Google Scholar
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703:Computational biologists
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621:Pittsburgh Post-Gazette
274:Nature Reviews Genetics
192:computational biologist
667:Jian Ma's publications
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196:Ray and Stephanie Lane
95:Computational genomics
286:, 55(1):78-88, 2023.
277:, 5(2):123-141, 2024.
225:Guggenheim Fellowship
186:: 马坚) is an American
90:Computational biology
60:Guggenheim Fellowship
641:"RECOMB 2024 | HOME"
508:www.igb.illinois.edu
310:Nature Biotechnology
460:(5727): 1401–1402.
313:, 40:254–261, 2022.
223:, he was awarded a
143:(postdoc advisor),
446:Pennisi, Elizabeth
335:scholar.google.com
219:award in 2011. In
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420:Carnegie Mellon.
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194:. He is the
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123:(since 2016)
114:Institutions
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573:www.cmu.edu
426:www.cmu.edu
374:cbd.cmu.edu
145:Webb Miller
129:(2009–2015)
66:AAAS Fellow
43:Citizenship
677:Categories
650:2023-09-23
645:recomb.org
626:2021-06-19
602:2023-02-02
578:2020-05-22
553:2020-05-22
533:2020-05-22
513:2020-05-22
431:2021-06-19
403:2021-12-23
379:2021-06-18
340:2020-05-22
318:References
217:NSF CAREER
474:0036-8075
490:83068891
482:15933177
169:/~jianma
454:Science
184:Chinese
180:Jian Ma
156:Website
23:Jian Ma
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235:2024.
233:RECOMB
83:Fields
68:(2022)
62:(2020)
53:Awards
486:S2CID
478:PMID
470:ISSN
221:2020
190:and
167:.edu
165:.cmu
462:doi
458:308
202:at
163:.cs
161:www
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