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Polycystin cation channel family

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327:, tetrapropylammonium, tetrapentenyl ammonium). The channel diameter was estimated to be at least 1.1 Γ…. Both are reported to be integral membrane proteins with 7-11 TMSs (PKD1) and 6 TMSs (PKD2), respectively. They share a homologous region of about 400 residues (residues 206-623 in PKD2; residues 3656-4052 in PKD1) which includes five TMSs of both proteins. This may well be the channel domain. PKD2 and polycystin-L have been shown to exhibit voltage-, pH- and divalent cation-dependent channel activity. PKD1 may function primarily in regulation, both activating and stabilizing the polycystin-2 channel. 336:
left-right asymmetry development. TRPP3 is implicated in sour tasting in bipolar cells of taste buds of the tongue and in the regulation of pH-sensitive action potential in neurons surrounding the central canal of the spinal cord. TRPP3 is present in both excitable and non-excitable cells in various tissues, such as retina, brain, heart, testis, and kidney.
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Autosomal recessive polycystic kidney disease is caused by mutations in PKHD1, which encodes the membrane-associated receptor-like protein fibrocystin/polyductin (FPC) (Q8TCZ9, 4074aaa). FPC associates with the primary cilia of epithelial cells and co-localizes with the Pkd2 gene product polycystin-2
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Polycystin-L has been shown to be a cation (Na, K and Ca) channel that is activated by Ca, while polycystin-2 has been characterized as a Ca-permeable cation-selective channel. Two members of the PCC family (polycystin 1 and 2; PKD1 and 2) are mutated in human autosomal dominant polycystic kidney
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Transient receptor potential (TRP) polycystin 2 and 3 (TRPP2 and 3) are homologous members of the TRP superfamily of cation channels but have different physiological functions. TRPP2 is part of a flow sensor, and is defective in autosomal dominant polycystic kidney disease and implicated in
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Alpha-actinin is an actin-bundling protein known to regulate several types of ion channels. Planer lipid bilayer electrophysiology showed that TRPP3 exhibits cation channel activities that are substantially augmented by alpha-actinin. The TRPP3-alpha-actinin association was documented by
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imaging has revealed the domain structure of polycystin-1. It exhibits minimal sequence similarities, but similar domain organization and membrane topology with established cation channels such as the transient receptor potential (TRP) and voltage-gated ion channel (VIC) family proteins
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The TRP-ML1 protein (Mucolipin-1) has been shown to be a lysosomal monovalent cation channel that undergoes inactivating proteolytic cleavage. It shows greater sequence similarity to the transmembrane region of polycystin 2 than it does to members of the TRP-CC family
927: 298:, leads to development of ADPKD (autosomal-dominant polycystic kidney disease). Besides modulating channel activity and related signaling events, the CRDs (C-terminal regulatory domains) of PKD2 and PKD2L1 play a central role in channel 280:
description, polycystin 1 contains 16 polycystic kidney disease (PKD) domains, one LDL-receptor class A domain, one C-type lectin family domain, and 16-18 putative TMSs in positions between residues 2200 and 4100. However,
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Molland KL, Narayanan A, Burgner JW, Yernool DA (July 2010). "Identification of the structural motif responsible for trimeric assembly of the C-terminal regulatory domains of polycystin channels PKD2L1 and PKD2".
172:) consists of several transporters ranging in size from 500 to over 4000 amino acyl residues (aas) in length and exhibiting between 5 and 18 transmembrane segments (TMSs). This family is a constituent of the 294:, respectively). However, PSI-BLAST without iterations does not pick up these similarities. The PKD2L1-PKD1L3 complex perceives sour taste. Disruption of the PKD2-PKD1 complex, responsible for 311:
disease, and polycystin-L, very similar and probably orthologous to PKD2, is deleted in mice with renal and retinal defects. PKD1 and 2 interact to form the non-selective cation channel
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Human polycystin 1 is a huge protein of 4303 amino acyl residues (aas). Its repeated leucine-rich (LRR) segment is found in many proteins. According to the
176:. These transporters generally catalyze the export of cations. A representative list of proteins belonging to the PCC family can be found in the 752: 457:
Oatley P, Stewart AP, Sandford R, Edwardson JM (April 2012). "Atomic force microscopy imaging reveals the domain structure of polycystin-1".
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where it associates with alpha-actinin-2. Alpha-actinin attaches TRPP3 to the cytoskeleton and up-regulates its channel function.
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but PKD2 can form channels in the absence of any other associated protein. Polycystin-2 transports a variety of organic cations (
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Kim I, Fu Y, Hui K, Moeckel G, Mai W, Li C, Liang D, Zhao P, Ma J, Chen XZ, George AL, Coffey RJ, Feng ZP, Wu G (March 2008).
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Gonzalez-Perrett S, Batelli M, Kim K, Essafi M, Timpanaro G, Moltabetti N, Reisin IL, Arnaout MA, Cantiello HF (July 2002).
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co-immunoprecipitation using native cells and tissues, yeast two-hybrid, and in vitro binding assays. TRPP3 is abundant in
375:(PC2). Kim et al. (2008) have concluded that a functional and molecular interaction exists between FPC and PC2 in vivo. 324: 967: 952: 947: 384: 350: 173: 828:
Kiselyov K, Chen J, Rbaibi Y, Oberdick D, Tjon-Kon-Sang S, Shcheynikov N, Muallem S, Soyombo A (December 2005).
140: 871:"Fibrocystin/polyductin modulates renal tubular formation by regulating polycystin-2 expression and function" 282: 694:
Xu GM, GonzΓ‘lez-Perrett S, Essafi M, Timpanaro GA, Montalbetti N, Arnaout MA, Cantiello HF (January 2003).
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There are a number of crystal structures available for members of the PCC family. Some of these include:
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Dalagiorgou G, Basdra EK, Papavassiliou AG (October 2010). "Polycystin-1: function as a mechanosensor".
349:). Therefore, it is included in the former family. Both the PCC and TRP-CC families are members of the 136: 810: 676: 320: 900: 851: 802: 758: 748: 717: 668: 627: 586: 545: 509: 474: 225: 206: 193: 127: 606:"Voltage dependence and pH regulation of human polycystin-2-mediated cation channel activity" 890: 882: 841: 792: 740: 707: 658: 617: 576: 537: 501: 466: 295: 119: 779:
Li Q, Dai XQ, Shen PY, Wu Y, Long W, Chen CX, Hussain Z, Wang S, Chen XZ (December 2007).
299: 895: 870: 830:"TRP-ML1 is a lysosomal monovalent cation channel that undergoes proteolytic cleavage" 663: 646: 941: 797: 780: 316: 81: 814: 45: 680: 177: 115: 93: 922: 744: 739:. Advances in Experimental Medicine and Biology. Vol. 704. pp. 229–37. 505: 439: 414: 346: 291: 287: 169: 69: 57: 389: 363: 735:
Noben-Trauth K (1 January 2011). "The TRPML3 Channel: From Gene to Function".
647:"Modulation of the human polycystin-L channel by voltage and divalent cations" 904: 886: 855: 846: 829: 806: 762: 721: 712: 695: 672: 631: 622: 605: 590: 581: 564: 549: 513: 478: 645:
Liu Y, Li Q, Tan M, Zhang YY, Karpinski E, Zhou J, Chen XZ (August 2002).
52: 541: 277: 565:"Organic cation permeation through the channel formed by polycystin-2" 470: 259: 253: 247: 241: 235: 229: 216: 210: 197: 16:
Group of membrane proteins that passively export cations out of a cell
147: 781:"Direct binding of alpha-actinin enhances TRPP3 channel activity" 696:"Polycystin-1 activates and stabilizes the polycystin-2 channel" 109: 64: 40: 928:
Creative Commons Attribution-ShareAlike 3.0 Unported License
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The International Journal of Biochemistry & Cell Biology
926:, which is licensed in a way that permits reuse under the 917: 146: 126: 108: 103: 87: 75: 63: 51: 39: 31: 26: 21: 923:"1.A.5 The Polycystin Cation Channel (PCC) Family" 415:"1.A.5 The Polycystin Cation Channel (PCC) Family" 774: 772: 875:Journal of the American Society of Nephrology 8: 204:Polycystic kidney disease 2-like 1 protein: 174:Voltage-Gated Ion Channel (VIC) Superfamily 22:C-terminal Cytosolic Domain of Polycystin-2 100: 894: 845: 796: 711: 662: 621: 580: 302:. These proteins appear to form trimers. 563:Anyatonwu GI, Ehrlich BE (August 2005). 406: 934:. All relevant terms must be followed. 166:Polycystin Cation Channel (PCC) Family 18: 737:Transient Receptor Potential Channels 331:Transient receptor potential proteins 7: 834:The Journal of Biological Chemistry 700:The Journal of Biological Chemistry 610:The Journal of Biological Chemistry 569:The Journal of Biological Chemistry 395:Transporter Classification Database 178:Transporter Classification Database 14: 920:, this article uses content from 798:10.1111/j.1471-4159.2007.04940.x 1: 664:10.1016/s0014-5793(02)03071-5 104:Available protein structures: 745:10.1007/978-94-007-0265-3_13 506:10.1016/j.biocel.2010.06.017 989: 973:Integral membrane proteins 963:Transmembrane transporters 370:Physiological significance 785:Journal of Neurochemistry 385:Voltage-gated ion channel 99: 530:The Biochemical Journal 283:atomic force microscopy 958:Transmembrane proteins 887:10.1681/ASN.2007070770 847:10.1074/jbc.M508210200 713:10.1074/jbc.M209996200 623:10.1074/jbc.M105084200 582:10.1074/jbc.M504359200 930:, but not under the 440:"P98161-PKD1 Human" 968:Transport proteins 542:10.1042/BJ20091843 325:tetrabutylammonium 321:tetraethylammonium 184:Crystal Structures 953:Membrane proteins 754:978-94-007-0264-6 471:10.1021/bi300134b 162: 161: 158: 157: 153:structure summary 980: 948:Protein families 909: 908: 898: 866: 860: 859: 849: 840:(52): 43218–23. 825: 819: 818: 800: 776: 767: 766: 732: 726: 725: 715: 691: 685: 684: 666: 642: 636: 635: 625: 616:(28): 24959–66. 601: 595: 594: 584: 575:(33): 29488–93. 560: 554: 553: 524: 518: 517: 489: 483: 482: 454: 448: 447: 436: 430: 429: 427: 425: 411: 296:mechanosensation 272:Human polycystin 262: 256: 250: 244: 238: 232: 219: 213: 200: 101: 19: 988: 987: 983: 982: 981: 979: 978: 977: 938: 937: 913: 912: 868: 867: 863: 827: 826: 822: 791:(6): 2391–400. 778: 777: 770: 755: 734: 733: 729: 693: 692: 688: 644: 643: 639: 603: 602: 598: 562: 561: 557: 526: 525: 521: 491: 490: 486: 465:(13): 2879–88. 456: 455: 451: 438: 437: 433: 423: 421: 413: 412: 408: 403: 381: 372: 359: 351:VIC superfamily 342: 333: 308: 300:oligomerization 274: 269: 258: 252: 246: 240: 234: 224: 215: 205: 192: 186: 77:OPM superfamily 17: 12: 11: 5: 986: 984: 976: 975: 970: 965: 960: 955: 950: 940: 939: 911: 910: 861: 820: 768: 753: 727: 706:(3): 1457–62. 686: 637: 596: 555: 519: 500:(10): 1610–3. 484: 449: 431: 405: 404: 402: 399: 398: 397: 392: 387: 380: 377: 371: 368: 358: 355: 341: 338: 332: 329: 307: 304: 273: 270: 268: 265: 185: 182: 160: 159: 156: 155: 150: 144: 143: 130: 124: 123: 113: 106: 105: 97: 96: 91: 85: 84: 79: 73: 72: 67: 61: 60: 55: 49: 48: 43: 37: 36: 33: 29: 28: 24: 23: 15: 13: 10: 9: 6: 4: 3: 2: 985: 974: 971: 969: 966: 964: 961: 959: 956: 954: 951: 949: 946: 945: 943: 936: 935: 933: 929: 924: 921: 919: 906: 902: 897: 892: 888: 884: 881:(3): 455–68. 880: 876: 872: 865: 862: 857: 853: 848: 843: 839: 835: 831: 824: 821: 816: 812: 808: 804: 799: 794: 790: 786: 782: 775: 773: 769: 764: 760: 756: 750: 746: 742: 738: 731: 728: 723: 719: 714: 709: 705: 701: 697: 690: 687: 682: 678: 674: 670: 665: 660: 657:(1–3): 71–6. 656: 652: 648: 641: 638: 633: 629: 624: 619: 615: 611: 607: 600: 597: 592: 588: 583: 578: 574: 570: 566: 559: 556: 551: 547: 543: 539: 536:(1): 171–83. 535: 531: 523: 520: 515: 511: 507: 503: 499: 495: 488: 485: 480: 476: 472: 468: 464: 460: 453: 450: 445: 441: 435: 432: 420: 416: 410: 407: 400: 396: 393: 391: 388: 386: 383: 382: 378: 376: 369: 367: 365: 357:Alpha-actinin 356: 354: 352: 348: 339: 337: 330: 328: 326: 322: 318: 317:dimethylamine 314: 305: 303: 301: 297: 293: 289: 284: 279: 271: 266: 264: 261: 255: 249: 243: 237: 231: 227: 221: 218: 212: 208: 202: 199: 195: 189: 183: 181: 179: 175: 171: 167: 154: 151: 149: 145: 142: 138: 134: 131: 129: 125: 121: 117: 114: 111: 107: 102: 98: 95: 92: 90: 86: 83: 80: 78: 74: 71: 68: 66: 62: 59: 56: 54: 50: 47: 44: 42: 38: 34: 30: 25: 20: 925: 915: 914: 878: 874: 864: 837: 833: 823: 788: 784: 736: 730: 703: 699: 689: 654: 651:FEBS Letters 650: 640: 613: 609: 599: 572: 568: 558: 533: 529: 522: 497: 493: 487: 462: 459:Biochemistry 458: 452: 443: 434: 422:. Retrieved 418: 409: 373: 360: 343: 334: 312: 309: 306:Polycystin-L 275: 222: 203: 190: 187: 165: 163: 390:Ion channel 364:mouse brain 340:Mucolipin-1 89:OPM protein 27:Identifiers 942:Categories 401:References 267:Homologues 116:structures 918:this edit 347:TC# 1.A.4 313:in vitro, 292:TC# 1.A.1 288:TC# 1.A.4 257:​, 251:​, 245:​, 239:​, 233:​, 214:​, 170:TC# 1.A.5 58:IPR013122 905:18235088 856:16257972 815:84357640 807:17944866 763:21290299 722:12407099 673:12163164 632:11991947 591:15961385 550:20408813 514:20601082 479:22409330 424:10 April 379:See also 263:​ 220:​ 201:​ 133:RCSB PDB 53:InterPro 896:2391052 681:3150744 444:Uniprot 278:UniProt 46:PF08016 916:As of 903:  893:  854:  813:  805:  761:  751:  720:  679:  671:  630:  589:  548:  512:  477:  223:PKD2: 191:PKD1: 148:PDBsum 122:  112:  32:Symbol 811:S2CID 677:S2CID 70:1.A.5 932:GFDL 901:PMID 852:PMID 803:PMID 759:PMID 749:ISBN 718:PMID 669:PMID 628:PMID 587:PMID 546:PMID 510:PMID 475:PMID 426:2016 419:TCDB 290:and 260:2Y4Q 254:2KQ6 248:3HRO 242:3HRN 236:2KLE 230:2KLD 217:4GIF 211:3TE3 198:1B4R 164:The 141:PDBj 137:PDBe 120:ECOD 110:Pfam 94:5mkf 65:TCDB 41:Pfam 35:PKD2 891:PMC 883:doi 842:doi 838:280 793:doi 789:103 741:doi 708:doi 704:278 659:doi 655:525 618:doi 614:277 577:doi 573:280 538:doi 534:429 502:doi 467:doi 226:PDB 207:PDB 194:PDB 128:PDB 944:: 899:. 889:. 879:19 877:. 873:. 850:. 836:. 832:. 809:. 801:. 787:. 783:. 771:^ 757:. 747:. 716:. 702:. 698:. 675:. 667:. 653:. 649:. 626:. 612:. 608:. 585:. 571:. 567:. 544:. 532:. 508:. 498:42 496:. 473:. 463:51 461:. 442:. 417:. 353:. 323:, 319:, 228:: 209:: 196:: 180:. 139:; 135:; 118:/ 907:. 885:: 858:. 844:: 817:. 795:: 765:. 743:: 724:. 710:: 683:. 661:: 634:. 620:: 593:. 579:: 552:. 540:: 516:. 504:: 481:. 469:: 446:. 428:. 345:( 286:( 168:( 82:8

Index

Pfam
PF08016
InterPro
IPR013122
TCDB
1.A.5
OPM superfamily
8
OPM protein
5mkf
Pfam
structures
ECOD
PDB
RCSB PDB
PDBe
PDBj
PDBsum
structure summary
TC# 1.A.5
Voltage-Gated Ion Channel (VIC) Superfamily
Transporter Classification Database
PDB
1B4R
PDB
3TE3
4GIF
PDB
2KLD
2KLE

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