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Proline-rich 12

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or CAAT box was found upstream of the predicted transcription start region. Because no clear TATA box was found, it is possible that PRR12 is regulated by a TATA-less promoter containing a downstream promoter element (DPE). However, the predicted DPE is only 15bp downstream of the transcription start region instead of the typical +25 to +32 base pairs. More research will be required to expand the 5' UTR of the PRR12 transcript in order to confirm where the correct promoter region is located.
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The promoter region of PRR12 was predicted using ElDorado at Genomatix. The region starts at position 50094408 and ends at 50095013 of chromosome 19. This promoter set is conserved in the macaque, mouse, rat, horse, cow, pig, dog and zebrafish. No recognizable TATA box, B recognition element (BRE),
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which is also proline and glycine rich. A relationship between the two might be an explanation for the appearance of autoimmune CTDs after infection of EBV. However, glycine and proline residues in collagen generally follow a G-P-X or G-X-HydroxyP motif, which does not significantly occur in
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along the backbone of the protein, inhibiting the ability of these proteins to fold properly and allowing the possibility of protein aggregation. Residues such as G, A, S, Y, and P are listed as poor protectors and PRR12 is rich in both proline and glycine. Many of the proline residues are
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involved with cell adhesion and cell migration. Ras-related protein R-Ras, RRAS, belongs to the Ras family and is involved in the organization of actin filaments within the cytoskeleton. SR-Related CTD-Associated Factor 1, SCAF1, is thought to be involved in the splicing of
1085:) is the only closely related paralog to PRR12 (NCBI accession: EAW68214). QSER1 has no known function and, like PRR12, it contains DUF4211 and a nuclear localization signal. QSER1 does not contain the AT binding regions or Epstein-Barr virus antigen that is found in PRR12. 1673:"Elevated immunoglobulin G antibodies to the proline-rich amino-terminal region of Epstein-Barr virus nuclear antigen-2 in sera from patients with systemic connective tissue diseases and from a subgroup of Sjögren's syndrome patients with pulmonary involvements" 1128:
found close homology between a proline rich region in PRR12 and a 65 amino acid long region at the terminal end of EBNA-2 (a nuclear antigen of the virus). This Epstein-Barr virus antigen is associated with autoimmune systemic
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would have the following residues: P-P-K-K-K-R-K-V. PRR12 contains a DUF4211 domain starting at V1836 that shows homology to the pfam13926 domain. This domain is well conserved in PRR12
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on the antisense strand. Nitric oxide synthase interacting protein, NOSIP, regulates the activity and localization of nitric oxide synthase (endothelial and neuronal), controlling
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The three isoforms of the human PRR12 protein as listed in the UniProt database. Red arrows indicate where certain exons are partially or entirely not present in isoforms 1 and 2.
1097:. Orthologs were found in fish, amphibians, reptiles, and other mammals. While no PRR12 orthologs were found in birds, birds did have orthologs to the QSER1, which is a close 1720:
Chowdhury F, Wang L, Al-Raqad M, Amor DJ, Baxová A, Bendová Š, Biamino E, Brusco A, Caluseriu O, Cox NJ, Froukh T, Gunay-Aygun M, Hančárová M, Haynes D, Heide S (July 2021).
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positioned consecutively in regions of low complexity. These regions may give this protein interesting secondary structure as a cluster of proline can form a
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This section of PRR12 shows a possible nuclear import signal outlined in orange. Highlighted in yellow is the DUF4211 that shows homology to pfam13926.
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with isoform 3 containing roughly one thousand more amino acid residues than the other isoforms. No 5' UTR is given in the NCBI records for the
1039:. Jianping Chen lists PRR12 as an "extremely vulnerable protein". These proteins have regions rich in amino acids that are "poor protectors" of 1015: 1238: 1794: 1631: 1549: 1220: 1149:(SSc), and secondary SS. PRR12 is not only proline rich, but it is also rich in glycine, suggesting that there might be a relationship to 1060:
binding regions at P1168 and G1202. These regions allow proteins to bind DNA, further supporting the localization of PRR12 to the nucleus.
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around 7.728. A number of bioinformatics databases have also predicted PRR12 to be a soluble protein with no
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at 19q13.33. Known aliases for PRR12 include "proline rich 12" and KIAA1205. Within its gene neighborhood,
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Yamazaki M, Kitamura R, Kusano S, Eda H, Sato S, Okawa-Takatsuji M, Aotsuka S, Yanagi K (March 2005).
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The PRR12 mRNA transcript is 6960 base pairs long and contains several short sequence repeats. The
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The most distant relative found through BLAST with a significant similarity to PRR12 is the fish
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The gene is moderately expressed at even levels in a wide variety of tissue types.
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PRR12 transcript. However, 7 base pairs of the 5' UTR have been determined in the
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National Center for Biotechnology Information, U.S. National Library of Medicine
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National Center for Biotechnology Information, U.S. National Library of Medicine
1737: 1048:. PRR12 contains a possible nuclear import signal starting at P1794. A typical 412: 1104: 898: 894: 228: 125: 75: 1745: 1721: 1053: 1027:
The PRR12 transcript encodes a protein that is 2036 residues long. It has a
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The expression profile of PRR12 in a variety of cell tissue types.
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PRR12 Promoter Region as predicted using ElDorado via Genomatix.
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dentate gyrus of hippocampal formation granule cell
1254: 1252: 1199: 1197: 1195: 1178: 1176: 1174: 266: 165: 50:, KIAA1205, Proline-rich 12, proline rich 12, NOC 1438:"Proline-rich protein 12 - Homo sapiens (Human)" 1115:An unrooted phylogenetic map of PRR12 orthologs. 1535: 1533: 1478: 1476: 1474: 901:and is associated with proteins present in the 16:Protein-coding gene in the species Homo sapiens 1666: 1664: 1432: 1430: 1204:GRCm38: Ensembl release 89: ENSMUSG00000046574 995:ortholog. The 3' UTR is 852 base pairs long. 8: 1459:"Homo sapiens proline rich 12 (PRR12), mRNA" 1278: 1276: 893:production. Proline rich Gla, PRRG2, has a 857:gene is 34,785 base pairs long, contains 14 1626:(5th ed.). New York: Garland Science. 1183:GRCh38: Ensembl release 89: ENSG00000126464 1542:Molecular Basis of Gene Dosage Sensitivity 1157:Haploinsufficiency of PRR12 can result in 510: 307: 206: 103: 1696: 1598: 1081:The glutamine and serine-rich protein 1 ( 1170: 915: 1677:Clinical & Experimental Immunology 1056:. PRR12 also contains well conserved 20: 397:cardiac muscle tissue of right atrium 271: 232: 227: 170: 129: 124: 7: 1622:Bruce Alberts, et al. (2008). 1483:http://seqtool.sdsc.edu/CGI/BW.cgi# 835:of unknown function encoded by the 1410:"Genomes and Annotation: ElDorado" 742: 721: 695: 674: 650: 631: 605: 586: 560: 541: 489: 407: 345: 324: 14: 1689:10.1111/j.1365-2249.2004.02704.x 934: 918: 427:dorsomedial hypothalamic nucleus 393:inferior ganglion of vagus nerve 255: 248: 242: 219: 154: 147: 141: 116: 1650:. Ncbi.nlm.nih.gov. 2013-08-12 1573:Williamson MP (Jan 15, 1994). 473:More reference expression data 377:right hemisphere of cerebellum 1: 1624:Molecular biology of the cell 1050:nuclear localization sequence 240: 139: 1795:Genes on human chromosome 19 1135:systemic lupus erythematosus 455:nucleus of stria terminalis 1816: 1767:Steinbuch Y (2024-02-08). 1738:10.1038/s41436-021-01129-6 1544:(Ph.D.). Rice University. 1519:. Psort.hgc.jp. 1999-11-24 1498:. Emboss.bioinformatics.nl 1161:among other abnormalities 1131:connective tissue diseases 1239:"Mouse PubMed Reference:" 1221:"Human PubMed Reference:" 815: 810: 806: 799: 783: 764: 749: 728: 717: 702: 681: 670: 657: 653: 638: 634: 625: 612: 608: 593: 589: 580: 567: 563: 548: 544: 535: 520: 513: 509: 497: 492: 483: 470: 419: 410: 357: 348: 318: 310: 306: 289: 276: 239: 218: 209: 205: 188: 175: 138: 115: 106: 102: 57: 54: 44: 37: 32: 28: 23: 877:on the sense strand and 770:Chr 19: 49.59 – 49.63 Mb 1579:The Biochemical Journal 431:external carotid artery 423:internal carotid artery 1116: 1108: 1068: 1019: 1003: 966: 777:Chr 7: 44.68 – 44.7 Mb 369:ventral tegmental area 1517:"PSORT II Prediction" 1114: 1107: 1066: 1037:transmembrane domains 1031:of 211.1 kdal and an 1017: 1001: 964: 132:Chromosome 19 (human) 1726:Genetics in Medicine 1143:rheumatoid arthritis 903:extracellular matrix 861:, and is located on 234:Chromosome 7 (mouse) 1496:"EMBOSS: antigenic" 1120:Clinical importance 1262:. Ncbi.nlm.nih.gov 1147:systemic sclerosis 1126:Epstein–Barr virus 1117: 1109: 1069: 1020: 1004: 967: 615:ENSMUSG00000046574 1633:978-0-8153-4111-6 1591:10.1042/bj2970249 1551:978-1-109-21734-6 1124:One study on the 1046:polyproline helix 1033:isoelectric point 944:gene neighborhood 826: 825: 822: 821: 795: 794: 760: 759: 739: 738: 713: 712: 692: 691: 666: 665: 647: 646: 621: 620: 602: 601: 576: 575: 557: 556: 505: 504: 501: 500: 479: 478: 466: 465: 404: 403: 302: 301: 201: 200: 96:PRR12 - orthologs 1807: 1779: 1778: 1776: 1775: 1764: 1758: 1757: 1732:(7): 1234–1245. 1717: 1711: 1710: 1700: 1668: 1659: 1658: 1656: 1655: 1644: 1638: 1637: 1619: 1613: 1612: 1602: 1585:(Pt 2): 249–60. 1570: 1564: 1563: 1537: 1528: 1527: 1525: 1524: 1513: 1507: 1506: 1504: 1503: 1492: 1486: 1480: 1469: 1468: 1466: 1465: 1455: 1449: 1448: 1446: 1445: 1434: 1425: 1424: 1422: 1421: 1412:. Archived from 1406: 1400: 1399: 1397: 1395: 1385: 1379: 1378: 1376: 1374: 1364: 1358: 1357: 1355: 1353: 1343: 1337: 1336: 1334: 1332: 1322: 1316: 1315: 1313: 1311: 1301: 1295: 1294: 1292: 1291: 1280: 1271: 1270: 1268: 1267: 1256: 1247: 1246: 1235: 1229: 1228: 1217: 1211: 1201: 1190: 1180: 1139:Sjögren syndrome 1137:(SLE), primary 1133:(CTD) including 1101:to human PRR12. 1029:molecular weight 983:PRR12 has three 938: 929:on chromosome 19 922: 808: 807: 779: 772: 755: 743: 734: 722: 718:RefSeq (protein) 708: 696: 687: 675: 651: 632: 606: 587: 561: 542: 511: 490: 475: 459:genital tubercle 415: 413:Top expressed in 408: 353: 351:Top expressed in 346: 325: 308: 298: 285: 274: 259: 252: 246: 235: 223: 207: 197: 184: 173: 158: 151: 145: 134: 120: 104: 98: 49: 42: 21: 1815: 1814: 1810: 1809: 1808: 1806: 1805: 1804: 1785: 1784: 1783: 1782: 1773: 1771: 1766: 1765: 1761: 1719: 1718: 1714: 1670: 1669: 1662: 1653: 1651: 1646: 1645: 1641: 1634: 1621: 1620: 1616: 1572: 1571: 1567: 1552: 1540:Chen J (2009). 1539: 1538: 1531: 1522: 1520: 1515: 1514: 1510: 1501: 1499: 1494: 1493: 1489: 1481: 1472: 1463: 1461: 1457: 1456: 1452: 1443: 1441: 1436: 1435: 1428: 1419: 1417: 1408: 1407: 1403: 1393: 1391: 1387: 1386: 1382: 1372: 1370: 1366: 1365: 1361: 1351: 1349: 1345: 1344: 1340: 1330: 1328: 1324: 1323: 1319: 1309: 1307: 1303: 1302: 1298: 1289: 1287: 1282: 1281: 1274: 1265: 1263: 1258: 1257: 1250: 1237: 1236: 1232: 1219: 1218: 1214: 1202: 1193: 1181: 1172: 1167: 1122: 1091: 1079: 1074: 1025: 1009: 972: 950: 949: 948: 945: 939: 930: 923: 848: 829:Proline-rich 12 817:View/Edit Mouse 812:View/Edit Human 775: 768: 765:Location (UCSC) 751: 730: 704: 683: 596:ENSG00000126464 471: 462: 457: 453: 449: 445: 441: 437: 433: 429: 425: 411: 400: 395: 391: 387: 383: 379: 375: 371: 367: 363: 349: 293: 280: 272: 262: 261: 260: 253: 233: 210:Gene location ( 192: 179: 171: 161: 160: 159: 152: 130: 107:Gene location ( 58: 45: 38: 17: 12: 11: 5: 1813: 1811: 1803: 1802: 1800:Human proteins 1797: 1787: 1786: 1781: 1780: 1759: 1712: 1683:(3): 558–568. 1660: 1639: 1632: 1614: 1565: 1550: 1529: 1508: 1487: 1470: 1450: 1426: 1401: 1380: 1359: 1338: 1317: 1296: 1272: 1248: 1230: 1212: 1191: 1169: 1168: 1166: 1163: 1121: 1118: 1090: 1087: 1078: 1075: 1073: 1070: 1041:hydrogen bonds 1024: 1021: 1008: 1005: 971: 968: 947: 946: 940: 933: 931: 924: 917: 914: 913: 912: 908:precursor mRNA 869:is flanked by 847: 844: 824: 823: 820: 819: 814: 804: 803: 797: 796: 793: 792: 790: 788: 781: 780: 773: 766: 762: 761: 758: 757: 747: 746: 740: 737: 736: 726: 725: 719: 715: 714: 711: 710: 700: 699: 693: 690: 689: 679: 678: 672: 668: 667: 664: 663: 655: 654: 648: 645: 644: 636: 635: 629: 623: 622: 619: 618: 610: 609: 603: 600: 599: 591: 590: 584: 578: 577: 574: 573: 565: 564: 558: 555: 554: 546: 545: 539: 533: 532: 527: 522: 518: 517: 507: 506: 503: 502: 499: 498: 495: 494: 487: 481: 480: 477: 476: 468: 467: 464: 463: 461: 460: 456: 452: 448: 444: 440: 436: 432: 428: 424: 420: 417: 416: 405: 402: 401: 399: 398: 394: 390: 386: 382: 378: 374: 370: 366: 362: 358: 355: 354: 342: 341: 333: 322: 316: 315: 312:RNA expression 304: 303: 300: 299: 291: 287: 286: 278: 275: 270: 264: 263: 254: 247: 241: 237: 236: 231: 225: 224: 216: 215: 203: 202: 199: 198: 190: 186: 185: 177: 174: 169: 163: 162: 153: 146: 140: 136: 135: 128: 122: 121: 113: 112: 100: 99: 56: 52: 51: 43: 35: 34: 30: 29: 26: 25: 15: 13: 10: 9: 6: 4: 3: 2: 1812: 1801: 1798: 1796: 1793: 1792: 1790: 1770: 1763: 1760: 1755: 1751: 1747: 1743: 1739: 1735: 1731: 1727: 1723: 1716: 1713: 1708: 1704: 1699: 1694: 1690: 1686: 1682: 1678: 1674: 1667: 1665: 1661: 1649: 1643: 1640: 1635: 1629: 1625: 1618: 1615: 1610: 1606: 1601: 1596: 1592: 1588: 1584: 1580: 1576: 1569: 1566: 1561: 1557: 1553: 1547: 1543: 1536: 1534: 1530: 1518: 1512: 1509: 1497: 1491: 1488: 1484: 1479: 1477: 1475: 1471: 1460: 1454: 1451: 1440:. Uniprot.org 1439: 1433: 1431: 1427: 1416:on 2021-05-22 1415: 1411: 1405: 1402: 1390: 1384: 1381: 1369: 1363: 1360: 1348: 1342: 1339: 1327: 1321: 1318: 1306: 1300: 1297: 1285: 1279: 1277: 1273: 1261: 1255: 1253: 1249: 1244: 1240: 1234: 1231: 1226: 1222: 1216: 1213: 1209: 1205: 1200: 1198: 1196: 1192: 1188: 1184: 1179: 1177: 1175: 1171: 1164: 1162: 1160: 1155: 1152: 1148: 1144: 1140: 1136: 1132: 1127: 1119: 1113: 1106: 1102: 1100: 1096: 1088: 1086: 1084: 1076: 1071: 1065: 1061: 1059: 1055: 1051: 1047: 1042: 1038: 1034: 1030: 1022: 1016: 1012: 1006: 1000: 996: 994: 990: 986: 982: 977: 976: 975:mRNA sequence 969: 963: 959: 955: 954: 943: 937: 932: 928: 921: 916: 911: 909: 904: 900: 896: 892: 888: 887: 882: 881: 876: 872: 868: 864: 863:chromosome 19 860: 856: 853: 845: 843: 841: 838: 834: 831:(PRR12) is a 830: 818: 813: 809: 805: 802: 798: 791: 789: 786: 782: 778: 774: 771: 767: 763: 756: 754: 748: 744: 741: 735: 733: 727: 723: 720: 716: 709: 707: 701: 697: 694: 688: 686: 680: 676: 673: 671:RefSeq (mRNA) 669: 662: 661: 656: 652: 649: 643: 642: 637: 633: 630: 628: 624: 617: 616: 611: 607: 604: 598: 597: 592: 588: 585: 583: 579: 572: 571: 566: 562: 559: 553: 552: 547: 543: 540: 538: 534: 531: 528: 526: 523: 519: 516: 512: 508: 496: 491: 488: 486: 482: 474: 469: 458: 454: 450: 446: 442: 438: 434: 430: 426: 422: 421: 418: 414: 409: 406: 396: 392: 388: 385:renal medulla 384: 380: 376: 372: 368: 364: 360: 359: 356: 352: 347: 344: 343: 340: 338: 334: 332: 331: 327: 326: 323: 321: 317: 313: 309: 305: 297: 292: 288: 284: 279: 269: 265: 258: 251: 245: 238: 230: 226: 222: 217: 213: 208: 204: 196: 191: 187: 183: 178: 168: 164: 157: 150: 144: 137: 133: 127: 123: 119: 114: 110: 105: 101: 97: 93: 89: 85: 81: 77: 73: 69: 65: 61: 53: 48: 41: 36: 31: 27: 22: 19: 1772:. Retrieved 1762: 1729: 1725: 1715: 1680: 1676: 1652:. Retrieved 1642: 1623: 1617: 1582: 1578: 1568: 1541: 1521:. Retrieved 1511: 1500:. Retrieved 1490: 1462:. Retrieved 1453: 1442:. Retrieved 1418:. Retrieved 1414:the original 1404: 1392:. Retrieved 1383: 1371:. Retrieved 1362: 1350:. Retrieved 1341: 1329:. Retrieved 1320: 1308:. Retrieved 1299: 1288:. Retrieved 1264:. Retrieved 1242: 1233: 1224: 1215: 1159:anophthalmia 1156: 1123: 1094: 1092: 1080: 1072:Conservation 1026: 1010: 993:Papio anubis 992: 989:Homo sapiens 988: 981:Homo sapiens 980: 978: 974: 973: 956: 952: 951: 941: 926: 925:Location of 902: 897:which binds 891:nitric oxide 884: 878: 874: 870: 866: 854: 852:Homo sapiens 851: 849: 839: 828: 827: 750: 729: 703: 682: 658: 639: 613: 594: 568: 549: 529: 524: 443:otic vesicle 335: 328: 55:External IDs 18: 1286:. GeneCards 1095:Danio rerio 389:sural nerve 294:44,702,305 281:44,676,987 273:7|7 B3 193:49,626,439 180:49,591,182 33:Identifiers 1789:Categories 1774:2024-02-09 1654:2014-01-26 1523:2014-01-26 1502:2014-01-26 1464:2014-11-06 1444:2014-01-26 1420:2014-11-06 1394:6 November 1373:6 November 1352:6 November 1331:6 November 1310:6 November 1290:2014-01-26 1266:2014-01-26 1210:, May 2017 1189:, May 2017 1165:References 1007:Expression 970:Transcript 899:hyaluronan 895:Gla domain 339:(ortholog) 76:HomoloGene 1746:1098-3600 1560:304989828 1089:Orthologs 1054:orthologs 753:NP_778187 732:NP_065770 706:NM_175022 685:NM_020719 515:Orthologs 439:subiculum 373:vena cava 84:GeneCards 1754:33824499 1707:15730403 1556:ProQuest 1206:– 1185:– 1151:collagen 1077:Paralogs 985:isoforms 953:Promoter 801:Wikidata 435:habenula 172:19q13.33 1698:1809310 1609:8297327 1600:1137821 1389:"SCAF1" 1326:"PRRG2" 1305:"NOSIP" 1208:Ensembl 1187:Ensembl 1154:PRR12. 1099:paralog 1058:AT-hook 1023:Protein 833:protein 627:UniProt 582:Ensembl 521:Species 381:pylorus 314:pattern 72:2679002 40:Aliases 1752:  1744:  1705:  1695:  1630:  1607:  1597:  1558:  1548:  1368:"RRAS" 1145:(RA), 1141:(SS), 787:search 785:PubMed 660:E9PYL2 641:Q9ULL5 570:233210 537:Entrez 485:BioGPS 451:atrium 365:nipple 361:cardia 64:616633 1347:"GLA" 1083:QSER1 942:PRR12 927:PRR12 886:NOSIP 875:SCAF1 871:PRRG2 867:PRR12 859:exons 855:PRR12 840:PRR12 551:57479 530:Mouse 525:Human 337:Mouse 330:Human 277:Start 212:Mouse 176:Start 109:Human 88:PRR12 80:18957 47:PRR12 24:PRR12 1750:PMID 1742:ISSN 1703:PMID 1628:ISBN 1605:PMID 1546:ISBN 1396:2014 1375:2014 1354:2014 1333:2014 1312:2014 883:and 880:RRAS 873:and 850:The 846:Gene 837:gene 320:Bgee 268:Band 229:Chr. 167:Band 126:Chr. 60:OMIM 1734:doi 1693:PMC 1685:doi 1681:139 1595:PMC 1587:doi 1583:297 493:n/a 290:End 189:End 92:OMA 68:MGI 1791:: 1748:. 1740:. 1730:23 1728:. 1724:. 1701:. 1691:. 1679:. 1675:. 1663:^ 1603:. 1593:. 1581:. 1577:. 1554:. 1532:^ 1473:^ 1429:^ 1275:^ 1251:^ 1241:. 1223:. 1194:^ 1173:^ 910:. 842:. 296:bp 283:bp 195:bp 182:bp 90:; 86:: 82:; 78:: 74:; 70:: 66:; 62:: 1777:. 1756:. 1736:: 1709:. 1687:: 1657:. 1636:. 1611:. 1589:: 1562:. 1526:. 1505:. 1485:! 1467:. 1447:. 1423:. 1398:. 1377:. 1356:. 1335:. 1314:. 1293:. 1269:. 1245:. 1227:. 214:) 111:) 94::

Index

Aliases
PRR12
OMIM
616633
MGI
2679002
HomoloGene
18957
GeneCards
PRR12
OMA
PRR12 - orthologs
Human
Chromosome 19 (human)
Chr.
Chromosome 19 (human)
Chromosome 19 (human)
Genomic location for PRR12
Genomic location for PRR12
Band
bp
bp
Mouse
Chromosome 7 (mouse)
Chr.
Chromosome 7 (mouse)
Genomic location for PRR12
Genomic location for PRR12
Band
bp

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