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Protein-truncating variants

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Duketis, E Fernandez, BA Gallagher, L Geller, E Guter, SJ Hill, RS Ioniță-Laza, J Jimenz Gonzalez, P Kilpinen, H Klauck, SM Kolevzon, A Lee, I Lei, I Lei, J Lehtimäki, T Lin, C-F Ma'ayan, A Marshall, CR McInnes, AL Neale, B Owen, MJ Ozaki, N Parellada, M Parr, JR Purcell, S Puura, K Rajagopalan, D Rehnström, K Reichenberg, A Sabo, A Sachse, M Sanders, SJ Schafer, C Schulte-Rüther, M Skuse, D Stevens, C Szatmari, P Tammimies, K Valladares, O Voran, A Li-San, W Weiss, LA Willsey, AJ Yu, TW Yuen, RKC DDD Study, Homozygosity Mapping Collaborative for Autism, UK10K Consortium, Cook, EH Freitag, CM Gill, M Hultman, CM Lehner, T Palotie, A Schellenberg, GD Sklar, P State, MW Sutcliffe, JS Walsh, CA Scherer, SW Zwick, ME Barett, JC Cutler, DJ Roeder, K Devlin, B Daly, MJ Buxbaum, JD (2014-11-13).
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De Rubeis, S He, X Goldberg, AP Poultney, CS Samocha, K Cicek, AE Kou, Y Liu, L Fromer, M Walker, S Singh, T Klei, L Kosmicki, J Shih-Chen, F Aleksic, B Biscaldi, M Bolton, PF Brownfeld, JM Cai, J Campbell, NG Carracedo, A Chahrour, MH Chiocchetti, AG Coon, H Crawford, EL Curran, SR Dawson, G
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MacArthur, Daniel G.; Lappalainen, Tuuli; Montgomery, Stephen B.; McCarthy, Mark I.; Dermitzakis, Emmanouil T.; Sammeth, Michael; Ardlie, Kristin; Donnelly, Peter; Guigo, Roderic (2015-05-08).
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Easton, Douglas F.; Dunning, Alison M.; Pharoah, Paul DP; Ostrander, Elaine A.; Luben, Robert; Brown, Judith; Conroy, Don M.; Baynes, Caroline; Ahmed, Shahana (2017-11-01).
138:"The Human Gene Mutation Database: building a comprehensive mutation repository for clinical and molecular genetics, diagnostic testing and personalized genomic medicine" 461: 396: 299: 400: 35:. PTV is sometime categorized under the umbrella term frameshift or truncating variants (FTVs), which includes both PTVs and DNA variants caused by 47:
It was believed that protein-truncating variants are not associated with human diseases. Recent studies have implied the involvement of PTVs in
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Rivas, M. A.; Pirinen, M.; Conrad, D. F.; Lek, M.; Tsang, E. K.; Karczewski, K. J.; Maller, J. B.; Kukurba, K. R.; DeLuca, D. S. (2015-05-08).
454: 485: 447: 195:"Rare, protein-truncating variants in ATM, CHEK2 and PALB2, but not XRCC2, are associated with increased breast cancer risks" 252:"Medical relevance of protein-truncating variants across 337,205 individuals in the UK Biobank study. - PubMed - NCBI" 206: 136:
Stenson, Peter D.; Mort, Matthew; Ball, Edward V.; Shaw, Katy; Phillips, Andrew D.; Cooper, David N. (January 2014).
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Synaptic, transcriptional and chromatin genes disrupted in autism
435: 455: 8: 395:: CS1 maint: multiple names: authors list ( 298:: CS1 maint: multiple names: authors list ( 462: 448: 399:) CS1 maint: numeric names: authors list ( 348: 275: 226: 169: 109: 250:pubmeddev; al, DeBoever C., et (2018). 60: 388: 291: 7: 416: 414: 131: 129: 14: 43:Implication in diseases/disorders 418: 1: 219:10.1136/jmedgenet-2017-104588 434:. You can help Knowledge by 207:Journal of Medical Genetics 199:Journal of Medical Genetics 17:Protein-truncating variants 502: 413: 268:10.1038/s41467-018-03910-9 154:10.1007/s00439-013-1358-4 27:predicted to shorten the 49:autism spectrum disorder 29:coding sequence of genes 486:Molecular biology stubs 341:10.1126/science.1261877 94:10.1126/science.1261877 31:, through ways like a 256:Nature Communications 333:2015Sci...348..666R 86:2015Sci...348..666R 37:frameshift mutation 33:stop-gain mutation 443: 442: 428:molecular biology 327:(6235): 666–669. 80:(6235): 666–669. 493: 464: 457: 450: 422: 415: 405: 404: 394: 386: 369: 363: 362: 352: 310: 304: 303: 297: 289: 279: 247: 241: 240: 230: 190: 184: 183: 173: 133: 124: 123: 113: 65: 25:genetic variants 501: 500: 496: 495: 494: 492: 491: 490: 471: 470: 469: 468: 411: 409: 408: 387: 371: 370: 366: 312: 311: 307: 290: 249: 248: 244: 192: 191: 187: 135: 134: 127: 67: 66: 62: 57: 45: 12: 11: 5: 499: 497: 489: 488: 483: 473: 472: 467: 466: 459: 452: 444: 441: 440: 423: 407: 406: 364: 305: 242: 185: 142:Human Genetics 125: 59: 58: 56: 53: 44: 41: 13: 10: 9: 6: 4: 3: 2: 498: 487: 484: 482: 479: 478: 476: 465: 460: 458: 453: 451: 446: 445: 439: 437: 433: 430:article is a 429: 424: 421: 417: 412: 402: 398: 392: 384: 380: 376: 368: 365: 360: 356: 351: 346: 342: 338: 334: 330: 326: 322: 321: 316: 309: 306: 301: 295: 287: 283: 278: 273: 269: 265: 261: 257: 253: 246: 243: 238: 234: 229: 224: 220: 216: 212: 208: 204: 200: 196: 189: 186: 181: 177: 172: 167: 163: 159: 155: 151: 147: 143: 139: 132: 130: 126: 121: 117: 112: 107: 103: 99: 95: 91: 87: 83: 79: 75: 71: 64: 61: 54: 52: 50: 42: 40: 38: 34: 30: 26: 22: 18: 436:expanding it 425: 410: 374: 367: 324: 318: 308: 294:cite journal 259: 255: 245: 202: 198: 188: 145: 141: 77: 73: 63: 46: 20: 16: 15: 262:(1): 1612. 213:: 732–741. 475:Categories 383:1031073384 148:(1): 1–9. 55:References 391:cite book 162:0340-6717 102:0036-8075 481:Mutation 359:25954003 286:29691392 237:28779002 180:24077912 120:25954003 350:4537935 329:Bibcode 320:Science 277:5915386 228:5740532 211:The BMJ 171:3898141 111:4537935 82:Bibcode 74:Science 381:  357:  347:  284:  274:  235:  225:  205:(11). 178:  168:  160:  118:  108:  100:  23:) are 426:This 432:stub 401:link 397:link 379:OCLC 355:PMID 300:link 282:PMID 233:PMID 176:PMID 158:ISSN 116:PMID 98:ISSN 21:PTVs 345:PMC 337:doi 325:348 272:PMC 264:doi 223:PMC 215:doi 166:PMC 150:doi 146:133 106:PMC 90:doi 78:348 477:: 393:}} 389:{{ 377:. 353:. 343:. 335:. 323:. 317:. 296:}} 292:{{ 280:. 270:. 258:. 254:. 231:. 221:. 209:, 203:54 201:. 197:. 174:. 164:. 156:. 144:. 140:. 128:^ 114:. 104:. 96:. 88:. 76:. 72:. 51:. 39:. 463:e 456:t 449:v 438:. 403:) 385:. 361:. 339:: 331:: 302:) 288:. 266:: 260:9 239:. 217:: 182:. 152:: 122:. 92:: 84:: 19:(

Index

genetic variants
coding sequence of genes
stop-gain mutation
frameshift mutation
autism spectrum disorder
"Effect of predicted protein-truncating genetic variants on the human transcriptome"
Bibcode
2015Sci...348..666R
doi
10.1126/science.1261877
ISSN
0036-8075
PMC
4537935
PMID
25954003


"The Human Gene Mutation Database: building a comprehensive mutation repository for clinical and molecular genetics, diagnostic testing and personalized genomic medicine"
doi
10.1007/s00439-013-1358-4
ISSN
0340-6717
PMC
3898141
PMID
24077912
"Rare, protein-truncating variants in ATM, CHEK2 and PALB2, but not XRCC2, are associated with increased breast cancer risks"
Journal of Medical Genetics
The BMJ

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