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RNA-induced transcriptional silencing

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heterochromatin. Once incorporated into the heterochromatin, the RITS complex is also known to play a role in the recruitment of other RNAi complexes as well as other chromatin modifying enzymes to specific genomic regions. Heterochromatin formation, but possibly not maintenance, is dependent on the
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are highly conserved and play some role in heterochromatin formation in mammals as well. In higher eukaryotes, RNAi-dependent heterochromatic silencing appears to play a larger role in germline cells than in primary cells or cell lines, and is only one of the many different forms of gene silencing
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substrates to replenish the complement of siRNA molecules to form more RITS complexes. The RITS complex localizes to heterochromatic regions through the base pairing of the nascent heterochromatic transcripts as well as through the Chp chromodomain which recognizes methylated histones found in
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is not clear, as some evidence suggests that heterochromatin maintenance in mammalian cells is independent of the components of the RNAi pathway. It is known, however, that plants and animals have analogous mechanism for small RNA-guided heterochromatin formation, and it is believed that the
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pathway. In this process, which is distinct from the process described above, argonaut-bound siRNA recognizes nascent RNA transcripts or the target DNA to guide the methylation and silencing of the target genomic region.
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Irvine D, Zaratiegui M, Tolia N, Goto D, Chitwood D, Vaughn M, Joshua-Tor L, Martienssen R (2006). "Argonaute slicing is required for heterochromatic silencing and spreading".
156:, in which RITS complexes stably bind the methylated histones of a heterochromatin region using the Chp1 protein and induce co-transcriptional degradation of any nascent 124:
protein Chp1, and an argonaute interacting protein Tas3 which can also bind to Chp1, while heterochromatin formation has been shown to require at least argonaute and an
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Volpe T, Schramke V, Hamilton G, White S, Teng G, Martienssen R, Allshire R (2003). "RNA interference is required for normal centromere function in fission yeast".
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Matzke, Marjori; Kanno, Tatsuo; Daxinger, Lucia; Huettel, Bruno; Matzke, Antonius J. M. (2009-06-01). "RNA-mediated chromatin-based silencing in plants".
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The role of RNAi in transcriptional gene silencing in plants has been characterized fairly well, and functions primarily through DNA methylation via the
639:"The assembly and maintenance of heterochromatin initiated by transgene repeats are independent of the RNA interference pathway in mammalian cells" 425:"RNA-dependent RNA polymerase is an essential component of a self-enforcing loop coupling heterochromatin assembly to siRNA production" 161: 125: 92: 791: 57: 598:"RITS acts in cis to promote RNA interference-mediated transcriptional and post-transcriptional silencing" 53: 152:
The maintenance of heterochromatin regions by RITS complexes has been described as a self-reinforcing
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The relevance of observations from fission yeast mating-type regions and centromeres to
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that binds to siRNAs and interacts with the methylated lysine 9 residue of histones H3 (
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tails (e.g. methylation of lysine 9 of histone H3) which target the genomic region for
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Noma K, Sugiyama T, Cam H, Verdel A, Zofall M, Jia S, Moazed D, Grewal S (2004).
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Verdel A, Jia S, Gerber S, Sugiyama T, Gygi S, Grewal S, Moazed D (2004).
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region. This is usually accomplished by posttranslational modification of
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Wang F, Koyama N, Nishida H, Haraguchi T, Reith W, Tsukamoto T (2006).
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Volpe T, Kidner C, Hall I, Teng G, Grewal S, Martienssen R (2002).
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results in abnormal heterochromatin organization and impairment of
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used throughout the genome, making it more difficult to study.
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Rhode Island Department of Children, Youth & Families
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Sugiyama T, Cam H, Verdel A, Moazed D, Grewal S (2005).
686:Volpe, Tom; Martienssen, Robert A. (2011-09-01). 474:Volpe, Tom; Martienssen, Robert A. (2011-09-01). 688:"RNA Interference and Heterochromatin Assembly" 476:"RNA Interference and Heterochromatin Assembly" 136:function, resulting in lagging chromosomes on 8: 160:(mRNA) transcripts, which are then used as 692:Cold Spring Harbor Perspectives in Biology 480:Cold Spring Harbor Perspectives in Biology 719: 662: 613: 572: 507: 450: 440: 348: 248: 56:(siRNA) – trigger the downregulation of 207: 38:RNA-induced transcriptional silencing 7: 25: 745:Current Opinion in Cell Biology 186:mechanisms described above for 104:formation. The RITS complex in 1: 531:Moazed, Danesh (2009-01-22). 162:RNA-dependent RNA polymerase 126:RNA-dependent RNA polymerase 704:10.1101/cshperspect.a003731 492:10.1101/cshperspect.a003731 177:Importance in other species 87:RITS was discovered in the 813: 29: 757:10.1016/j.ceb.2009.01.025 128:. Loss of these genes in 93:Schizosaccharomyces pombe 27:Form of RNA interference 442:10.1073/pnas.0407641102 394:10.1023/A:1022815931524 350:10.1126/science.1074973 294:10.1126/science.1128813 241:10.1126/science.1093686 148:Function and mechanisms 84:) is the RITS complex. 429:Proc Natl Acad Sci USA 54:small interfering RNA 655:10.1128/MCB.02189-05 108:contains at least a 52:molecules – such as 557:10.1038/nature07756 549:2009Natur.457..413M 341:2002Sci...297.1833V 286:2006Sci...313.1134I 233:2004Sci...303..672V 98:mating-type region 543:(7228): 413–420. 16:(Redirected from 804: 777: 776: 740: 734: 733: 723: 683: 677: 676: 666: 634: 628: 627: 617: 593: 587: 586: 576: 528: 522: 521: 511: 471: 465: 464: 454: 444: 420: 414: 413: 377: 371: 370: 352: 335:(5588): 1833–7. 320: 314: 313: 280:(5790): 1134–7. 269: 263: 262: 252: 212: 60:of a particular 46:RNA interference 21: 812: 811: 807: 806: 805: 803: 802: 801: 792:Gene expression 782: 781: 780: 742: 741: 737: 685: 684: 680: 649:(11): 4028–40. 636: 635: 631: 608:(11): 1174–80. 595: 594: 590: 530: 529: 525: 473: 472: 468: 422: 421: 417: 379: 378: 374: 322: 321: 317: 271: 270: 266: 227:(5658): 672–6. 214: 213: 209: 205: 179: 150: 78:protein complex 76:formation. The 74:heterochromatin 48:by which short 44:) is a form of 35: 28: 23: 22: 15: 12: 11: 5: 810: 808: 800: 799: 794: 784: 783: 779: 778: 751:(3): 367–376. 735: 698:(9): a003731. 678: 629: 615:10.1038/ng1452 588: 523: 486:(9): a003731. 466: 415: 382:Chromosome Res 372: 315: 264: 206: 204: 201: 178: 175: 149: 146: 26: 24: 14: 13: 10: 9: 6: 4: 3: 2: 809: 798: 795: 793: 790: 789: 787: 774: 770: 766: 762: 758: 754: 750: 746: 739: 736: 731: 727: 722: 717: 713: 709: 705: 701: 697: 693: 689: 682: 679: 674: 670: 665: 660: 656: 652: 648: 644: 643:Mol Cell Biol 640: 633: 630: 625: 621: 616: 611: 607: 603: 599: 592: 589: 584: 580: 575: 570: 566: 562: 558: 554: 550: 546: 542: 538: 534: 527: 524: 519: 515: 510: 505: 501: 497: 493: 489: 485: 481: 477: 470: 467: 462: 458: 453: 448: 443: 438: 434: 430: 426: 419: 416: 411: 407: 403: 399: 395: 391: 388:(2): 137–46. 387: 383: 376: 373: 368: 364: 360: 356: 351: 346: 342: 338: 334: 330: 326: 319: 316: 311: 307: 303: 299: 295: 291: 287: 283: 279: 275: 268: 265: 260: 256: 251: 246: 242: 238: 234: 230: 226: 222: 218: 211: 208: 202: 200: 197: 192: 189: 184: 176: 174: 172: 168: 163: 159: 158:messenger RNA 155: 154:feedback loop 147: 145: 143: 142:cell division 139: 135: 131: 127: 123: 119: 115: 111: 107: 103: 99: 95: 94: 90: 89:fission yeast 85: 83: 79: 75: 71: 67: 63: 59: 58:transcription 55: 51: 47: 43: 39: 33: 19: 748: 744: 738: 695: 691: 681: 646: 642: 632: 605: 601: 591: 540: 536: 526: 483: 479: 469: 435:(1): 152–7. 432: 428: 418: 385: 381: 375: 332: 328: 318: 277: 273: 267: 224: 220: 210: 193: 187: 180: 167:ribonuclease 151: 129: 122:chromodomain 112:-containing 105: 91: 86: 41: 37: 36: 110:piwi domain 786:Categories 203:References 134:centromere 102:centromere 765:1879-0410 712:1943-0264 602:Nat Genet 565:0028-0836 500:1943-0264 118:argonaute 773:19243928 730:21441597 673:16705157 624:15475954 583:19158787 518:21441597 461:15615848 410:23813417 402:12733640 359:12193640 310:42997104 302:16931764 259:14704433 188:S. pombe 169:protein 138:anaphase 130:S. pombe 106:S. pombe 721:3181039 664:1489094 574:3246369 545:Bibcode 509:3181039 367:2613813 337:Bibcode 329:Science 282:Bibcode 274:Science 250:3244756 229:Bibcode 221:Science 183:mammals 140:during 114:RNase H 100:and in 82:H3K9me2 70:histone 66:genomic 771:  763:  728:  718:  710:  671:  661:  622:  581:  571:  563:  537:Nature 516:  506:  498:  459:  452:544066 449:  408:  400:  365:  357:  308:  300:  257:  247:  116:-like 406:S2CID 363:S2CID 306:S2CID 171:dicer 769:PMID 761:ISSN 726:PMID 708:ISSN 669:PMID 620:PMID 579:PMID 561:ISSN 514:PMID 496:ISSN 457:PMID 398:PMID 355:PMID 298:PMID 255:PMID 196:RdDM 120:, a 62:gene 42:RITS 18:RITS 797:RNA 753:doi 716:PMC 700:doi 659:PMC 651:doi 610:doi 569:PMC 553:doi 541:457 504:PMC 488:doi 447:PMC 437:doi 433:102 390:doi 345:doi 333:297 290:doi 278:313 245:PMC 237:doi 225:303 64:or 50:RNA 788:: 767:. 759:. 749:21 747:. 724:. 714:. 706:. 694:. 690:. 667:. 657:. 647:26 645:. 641:. 618:. 606:36 604:. 600:. 577:. 567:. 559:. 551:. 539:. 535:. 512:. 502:. 494:. 482:. 478:. 455:. 445:. 431:. 427:. 404:. 396:. 386:11 384:. 361:. 353:. 343:. 331:. 327:. 304:. 296:. 288:. 276:. 253:. 243:. 235:. 223:. 219:. 144:. 775:. 755:: 732:. 702:: 696:3 675:. 653:: 626:. 612:: 585:. 555:: 547:: 520:. 490:: 484:3 463:. 439:: 412:. 392:: 369:. 347:: 339:: 312:. 292:: 284:: 261:. 239:: 231:: 40:( 34:. 20:)

Index

RITS
Rhode Island Department of Children, Youth & Families
RNA interference
RNA
small interfering RNA
transcription
gene
genomic
histone
heterochromatin
protein complex
H3K9me2
fission yeast
Schizosaccharomyces pombe
mating-type region
centromere
piwi domain
RNase H
argonaute
chromodomain
RNA-dependent RNA polymerase
centromere
anaphase
cell division
feedback loop
messenger RNA
RNA-dependent RNA polymerase
ribonuclease
dicer
mammals

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