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Resistance-nodulation-cell division superfamily

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cells that belong to the HAE-RND subfamily have been classified, including the multi-drug efflux protein AcrB, the outer membrane protein TolC and the periplasmic adaptor protein AcrA. The TolC and AcrA proteins are also utilized in the tripartite complex in other identified RND efflux proteins. The
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helices (TM1-TM12). The periplasmic domain consists of two helices, TM2 and TM8. In addition, the periplasmic domain is made up of six subdomains, PN1, PN2, PC1, PC2, DN, DC, which form a central pore and a dock domain. The central pore is formed by PN1, PN2, PC1, PC2, and together stabilize the
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RND pumps are the cytoplasmic residing portion of a complete tripartite complex (Fig. 1) which spreads across the outer-membrane and the inner membrane of gram-negative bacteria, also commonly referred to as the CBA efflux system. The RND protein associates with an outer membrane channel and a
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followed by a large extracytoplasmic domain, then six additional TMSs, a second large extracytoplasmic domain, and five final C-terminal TMSs. TM4 governs the specificity for a particular substrate in a given RND protein. Therefore, TM4 can be an indicator for RND specificity without explicit
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multi-drug resistance develops from a variety of mechanisms. Particularly concerning is the ability of efflux mechanisms to confer broad-spectrum resistance. RND efflux pumps provide extrusion for a range of compounds. Five protein transporters in
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Tseng TT, Gratwick KS, Kollman J, Park D, Nies DH, Goffeau A, Saier MH (August 1999). "The RND permease superfamily: an ancient, ubiquitous and diverse family that includes human disease and development proteins".
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and various other bacteria. Unlike other RND proteins Mdt(A) contains a putative ATP-binding site and two C-motifs conserved in its fifth TMS. Mdt is effective at providing the bacteria with resistance to
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five RND pumps have been specifically identified: AcrAB, AcrAD, AcrEF, MdtEF, and MdtAB. Although it is not clear how the tripartite complex works in bacteria two mechanisms have been proposed:
152:/amphiphile efflux-1 (gram-negative bacteria), the nodulation factor exporter family (NFE), the SecDF protein-secretion accessory protein family, the hydrophobe/amphiphile efflux-2 family, the 262:
subunits (suggesting they arose as a result of an intragenic tandem duplication event that occurred in the primordial system prior to divergence of the family members) each containing a
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and exportation of organic substrates allowed for recent characterization of specific pumps due to their increasing medical relevance. Half of the antibiotic resistance demonstrated in
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contain 13 RND transport systems, including one HME-RND and the remaining HAE-RNDs. Among the best identified are the Mex proteins: MexB, MexD, and MexF, which detoxify
180:. Most of the RND superfamily transport systems are made of large polypeptide chains. RND proteins exist primarily in gram-negative bacteria but can also be found in 333:
through the CzcA and later the CnrA protein. The best characterized RND proteins include CzcCBA (Cd, Zn, and Co), CnrCBA (Ni and Co), and NccCBA (Ni, Co and Cd) in
112: 100: 172:. They have a broad substrate spectrum and can lead to the diminished activity of unrelated drug classes if over-expressed. The first reports of drug resistant 283:
adaptor protein, and the association of all three proteins allows the system to export substrates into the external medium, providing a huge advantage for the
979:"The novel Helicobacter pylori CznABC metal efflux pump is required for cadmium, zinc, and nickel resistance, urease modulation, and gastric colonization" 669:
Routh, Mathew David, "Structure, function, and regulation of multidrug export proteins among the RND superfamily in Gram-negative bacteria" (2010).
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The RND family plays an important role in producing intrinsic and elevated multi-drug resistance in gram-negative bacteria. The export of
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fusion protein (MFP) CzcB, and the outer membrane factor protein (OMF) CzcC, all of which form the active tripartite complex, and the
1198: 831: 323:. The family includes pumps which export monovalent metals—the Cus system, and pumps which export divalent metals—the Czc system. 545:
The crystallized AcrB protein, provides insight into the mechanism of action of HAE-RND proteins, and other RND family proteins.
1183: 928:"Two RND proteins involved in heavy metal efflux in Caulobacter crescentus belong to separate clusters within proteobacteria" 623:"Overexpression of resistance-nodulation-cell division pump AdeFGH confers multidrug resistance in Acinetobacter baumannii" 1188: 17: 1131:"Mdt(A), a new efflux protein conferring multiple antibiotic resistance in Lactococcus lactis and Escherichia coli" 36: 291: 709:"Differential regulation of six heavy metal efflux systems in the response of Myxococcus xanthus to copper" 467: 342: 181: 137: 542:. The ways in which the lipophilic domains of the substrate and the RND pumps is not completely defined. 299: 133: 977:
Stähler FN, Odenbreit S, Haas R, Wilrich J, Van Vliet AH, Kusters JG, Kist M, Bereswill S (July 2006).
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family, and the hydrophobe/amphiphile efflux-3 family. These RND systems are involved in maintaining
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RND inner-membrane protein, outer-membrane fusion protein, & periplasmic adaptor protein.
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Mdt(A) is an efflux pump that confers resistance to a variety of drugs. It is expressed in
566: 539: 81: 686: 886: 871:"Crystal structures of the CusA efflux pump suggest methionine-mediated metal transport" 724: 1106: 1081: 1057: 1030: 1003: 978: 954: 927: 903: 870: 842: 741: 708: 647: 622: 456: 165: 791: 774: 200:
The RND protein dictates the substrate for the completed transport systems including:
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AcrAB-TolC efflux system is responsible for the efflux of antimicrobial drugs like
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Nikaido H (2011). "Structure and mechanism of RND-type multidrug efflux pumps".
511: 480: 335: 267: 177: 161: 157: 243: 823: 523: 479:. It is proposed that the MexB systems demonstrates substrate specificity for 437: 433: 362:
based on the location of multiple substrate binding sites on the RND protein.
320: 304: 295: 271: 255: 217: 213: 205: 149: 1047: 392:. The CznC and CznA proteins play the dominating role in nickel homeostasis. 294:
providing valuable structural information of HME-RND pumps. CusA exists as a
270:. Of the twelve helices there is a single transmembrane spanner (TMS) at the 944: 527: 519: 515: 359: 355: 280: 263: 189: 153: 1164: 1115: 1066: 1012: 963: 912: 851: 800: 750: 656: 607: 707:
Moraleda-Muñoz A, Pérez J, Extremera AL, Muñoz-Dorado J (September 2010).
412:. The CzcCBA operon includes: CzcA (the RND family specific protein), the 994: 732: 638: 621:
Coyne S, Rosenfeld N, Lambert T, Courvalin P, PĂ©richon B (October 2010).
577:. The source of energy for active efflux by Mdt(A) is currently unknown. 284: 894: 220:
compounds are carried out by the HAE-RND subfamily. While the efflux of
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Long F, Su CC, Zimmermann MT, Boyken SE, Rajashankar KR, Jernigan RL,
674: 483:; while the MexD-system expresses specificity for cepheme compounds. 421: 401: 383: 379: 44:: An HAE-RND subclass protein involved in drug and amphiphilic efflux 201: 687:"2.A.6 The Resistance-Nodulation-Cell Division (RND) Superfamily" 405: 375: 209: 88: 76: 63: 290:
The CusA protein, a HME-RND member transporter, was able to be
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were reported in the 1940s after the first mass production of
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Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics
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Advances in Enzymology and Related Areas of Molecular Biology
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antibiotics. Other substrates include dyes, detergents, some
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It has been proposed that metal-ion efflux occurs from the
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includes seven families: the heavy metal efflux (HME), the
1031:"The ins and outs of RND efflux pumps in Escherichia coli" 1129:
Perreten V, Schwarz FV, Teuber M, Levy SB (April 2001).
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Valencia EY, Braz VS, Guzzo C, Marques MV (April 2013).
775:"Efflux-mediated heavy metal resistance in prokaryotes" 254:
RND proteins are large and can include more than 1000
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resistance by the RND family was first discovered in
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Resistance-Nodulation-Cell Division Superfamily (RND)
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Journal of Molecular Microbiology and Biotechnology
111: 99: 87: 75: 62: 54: 49: 29: 1029:Anes J, McCusker MP, Fanning S, Martins M (2015). 319:in metal ion efflux powered by a proton-substrate 440:substrates is governed by the HAE-RND family. In 140:and located in the cytoplasmic membrane, that 258:residues. They are generally composed of two 8: 1024: 1022: 315:The HME-RND family functions as the central 768: 766: 764: 762: 760: 275:knowledge of the remainder of the protein. 1082:"Mechanisms of RND multidrug efflux pumps" 1154: 1105: 1056: 1046: 1002: 953: 943: 902: 841: 790: 740: 646: 386:modulation, and gastric colonization by 370:The Czn system maintains homeostasis of 242: 226: 132:) family transporters are a category of 585: 471:was attributed to RND efflux proteins. 347:and Czn (Cd, Zn, and Ni resistance) in 818:. Vol. 77. Wiley. pp. 1–60. 713:Applied and Environmental Microbiology 26: 1135:Antimicrobial Agents and Chemotherapy 627:Antimicrobial Agents and Chemotherapy 7: 1080:Nikaido H, Takatsuka Y (May 2009). 691:Transporter Classification Database 675:http://lib.dr.iastate.edu/etd/11401 671:Graduate Theses and Dissertations. 266:loop adjacent to 12 transmembrane 25: 424:is regulated through metal ions. 549:Multidrug transport (Mdt) efflux 298:with each unit consisting of 12 35: 1147:10.1128/AAC.45.4.1109-1114.2001 382:resistance; it is involved in 340:Czr (Cd and Zn resistance) in 126:Resistance-nodulation-division 1: 792:10.1016/s0168-6445(03)00048-2 303:trimeric organization of the 1098:10.1016/j.bbapap.2008.10.004 455:HAE-RNDs involvement in the 250:: HAE-RND subclass protein 136:, especially identified in 1215: 1194:Integral membrane proteins 400:Czc confers resistance to 311:Metal ion efflux (HME-RND) 232:Triparitate Complex Model: 1035:Frontiers in Microbiology 824:10.1002/9780470920541.ch1 779:FEMS Microbiology Reviews 428:Drug resistance (HAE-RND) 34: 1199:Antimicrobial resistance 1048:10.3389/fmicb.2015.00587 164:of the cell, removal of 30:RND permease superfamily 945:10.1186/1471-2180-13-79 239:Mechanism and structure 983:Infection and Immunity 468:Pseudomonas aeruginosa 450:Adaptor Wrapping Model 446:Adaptor Bridging Model 343:Pseudomonas aeruginosa 251: 235: 224:are preformed HME-RND. 182:gram-positive bacteria 170:virulence determinants 138:Gram-negative bacteria 134:bacterial efflux pumps 1184:Protein superfamilies 773:Nies DH (June 2003). 246: 230: 995:10.1128/IAI.02025-05 733:10.1128/AEM.00753-10 639:10.1128/AAC.00155-10 465:hospital strains of 420:. Expression of the 174:bacterial infections 144:substrates. The RND 895:10.1038/nature09395 887:2010Natur.467..484L 725:2010ApEnM..76.6069M 350:Helicobacter pylori 1189:Bacterial proteins 869:(September 2010). 477:organic substances 252: 236: 142:actively transport 248:Crystallized CusA 123: 122: 42:Crystallized AcrB 16:(Redirected from 1206: 1169: 1168: 1158: 1126: 1120: 1119: 1109: 1077: 1071: 1070: 1060: 1050: 1026: 1017: 1016: 1006: 974: 968: 967: 957: 947: 932:BMC Microbiology 923: 917: 916: 906: 862: 856: 855: 845: 811: 805: 804: 794: 770: 755: 754: 744: 704: 695: 694: 683: 677: 667: 661: 660: 650: 618: 612: 611: 590: 540:steroid hormones 536:organic solvents 331:R. metallidurans 168:, and export of 39: 27: 21: 1214: 1213: 1209: 1208: 1207: 1205: 1204: 1203: 1174: 1173: 1172: 1128: 1127: 1123: 1079: 1078: 1074: 1028: 1027: 1020: 976: 975: 971: 925: 924: 920: 881:(7314): 484–8. 864: 863: 859: 834: 813: 812: 808: 785:(2–3): 313–39. 772: 771: 758: 719:(18): 6069–76. 706: 705: 698: 685: 684: 680: 668: 664: 633:(10): 4389–93. 620: 619: 615: 592: 591: 587: 583: 567:chloramphenicol 551: 492: 430: 398: 368: 313: 241: 212:. Transport of 198: 166:toxic compounds 101:OPM superfamily 45: 23: 22: 15: 12: 11: 5: 1212: 1210: 1202: 1201: 1196: 1191: 1186: 1176: 1175: 1171: 1170: 1141:(4): 1109–14. 1121: 1072: 1018: 989:(7): 3845–52. 969: 918: 857: 832: 806: 756: 696: 678: 662: 613: 584: 582: 579: 550: 547: 491: 485: 457:detoxification 429: 426: 397: 394: 367: 364: 312: 309: 240: 237: 197: 194: 121: 120: 115: 109: 108: 103: 97: 96: 91: 85: 84: 79: 73: 72: 67: 60: 59: 56: 52: 51: 47: 46: 40: 32: 31: 24: 14: 13: 10: 9: 6: 4: 3: 2: 1211: 1200: 1197: 1195: 1192: 1190: 1187: 1185: 1182: 1181: 1179: 1166: 1162: 1157: 1152: 1148: 1144: 1140: 1136: 1132: 1125: 1122: 1117: 1113: 1108: 1103: 1099: 1095: 1092:(5): 769–81. 1091: 1087: 1083: 1076: 1073: 1068: 1064: 1059: 1054: 1049: 1044: 1040: 1036: 1032: 1025: 1023: 1019: 1014: 1010: 1005: 1000: 996: 992: 988: 984: 980: 973: 970: 965: 961: 956: 951: 946: 941: 937: 933: 929: 922: 919: 914: 910: 905: 900: 896: 892: 888: 884: 880: 876: 872: 868: 861: 858: 853: 849: 844: 839: 835: 833:9780470920541 829: 825: 821: 817: 810: 807: 802: 798: 793: 788: 784: 780: 776: 769: 767: 765: 763: 761: 757: 752: 748: 743: 738: 734: 730: 726: 722: 718: 714: 710: 703: 701: 697: 692: 688: 682: 679: 676: 673:Paper 11401. 672: 666: 663: 658: 654: 649: 644: 640: 636: 632: 628: 624: 617: 614: 609: 605: 602:(1): 107–25. 601: 597: 589: 586: 580: 578: 576: 572: 568: 564: 559: 557: 548: 546: 543: 541: 537: 533: 529: 525: 521: 517: 513: 509: 504: 499: 498: 489: 486: 484: 482: 478: 474: 473:P. aeruginosa 470: 469: 464: 463: 458: 453: 451: 447: 443: 439: 435: 427: 425: 423: 419: 415: 411: 407: 403: 395: 393: 391: 390: 385: 381: 377: 373: 365: 363: 361: 357: 353: 351: 346: 344: 339: 337: 332: 328: 324: 322: 318: 310: 308: 306: 301: 300:transmembrane 297: 293: 288: 286: 282: 276: 273: 269: 265: 261: 257: 249: 245: 238: 233: 229: 225: 223: 219: 215: 211: 207: 203: 195: 193: 191: 187: 183: 179: 175: 171: 167: 163: 159: 155: 151: 147: 143: 139: 135: 131: 127: 119: 116: 114: 110: 107: 104: 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202:metal ions 190:eukaryotes 154:eukaryotic 150:hydrophobe 558:, E. coli 556:L. lactis 528:linezolid 516:nafcillin 418:czcoperon 389:H. pylori 360:periplasm 356:cytoplasm 1165:11257023 1116:19026770 1067:26113845 1013:16790756 964:23578014 913:20865003 852:21692366 801:12829273 751:20562277 657:20696879 608:10941792 414:membrane 321:antiport 285:bacteria 196:Function 82:5067.1.1 1107:2696896 1058:4462101 1041:: 587. 1004:1489693 955:3637150 904:2946090 883:Bibcode 843:3122131 742:2937488 721:Bibcode 648:2944555 503:E. coli 497:E. coli 488:E. coli 462:in vivo 442:E. coli 410:Cadmium 372:Cadmium 268:helices 186:archaea 156:sterol 1163:  1153:  1114:  1104:  1065:  1055:  1011:  1001:  962:  952:  938:: 79. 911:  901:  875:Nature 850:  840:  830:  799:  749:  739:  655:  645:  606:  538:, and 530:, and 490:– AcrB 422:operon 408:, and 402:Cobalt 396:CzcCBA 384:Urease 380:Nickel 378:, and 366:CznCBA 188:, and 70:CL0322 55:Symbol 1156:90432 867:Yu EW 210:drugs 94:2.A.6 1161:PMID 1112:PMID 1090:1794 1063:PMID 1009:PMID 960:PMID 909:PMID 848:PMID 828:ISBN 797:PMID 747:PMID 653:PMID 604:PMID 573:and 448:and 436:and 406:Zinc 376:Zinc 358:and 216:and 118:2gif 89:TCDB 77:ECOD 66:clan 64:Pfam 1151:PMC 1143:doi 1102:PMC 1094:doi 1053:PMC 1043:doi 999:PMC 991:doi 950:PMC 940:doi 899:PMC 891:doi 879:467 838:PMC 820:doi 787:doi 737:PMC 729:doi 643:PMC 635:doi 494:In 208:or 130:RND 1180:: 1159:. 1149:. 1139:45 1137:. 1133:. 1110:. 1100:. 1088:. 1084:. 1061:. 1051:. 1037:. 1033:. 1021:^ 1007:. 997:. 987:74 985:. 981:. 958:. 948:. 936:13 934:. 930:. 907:. 897:. 889:. 877:. 873:. 846:. 836:. 826:. 795:. 783:27 781:. 777:. 759:^ 745:. 735:. 727:. 717:76 715:. 711:. 699:^ 689:. 651:. 641:. 631:54 629:. 625:. 598:. 569:, 565:, 526:, 522:, 518:, 514:, 510:, 452:. 404:, 374:, 307:. 287:. 204:, 192:. 184:, 106:16 1167:. 1145:: 1118:. 1096:: 1069:. 1045:: 1039:6 1015:. 993:: 966:. 942:: 915:. 893:: 885:: 854:. 822:: 803:. 789:: 753:. 731:: 723:: 693:. 659:. 637:: 610:. 600:1 352:. 345:, 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Index

Resistance-Nodulation-Cell Division Superfamily (RND)

Pfam
CL0322
ECOD
5067.1.1
TCDB
2.A.6
OPM superfamily
16
OPM protein
2gif
bacterial efflux pumps
Gram-negative bacteria
actively transport
superfamily
hydrophobe
eukaryotic
homeostasis
homeostasis
toxic compounds
virulence determinants
bacterial infections
antibiotics
gram-positive bacteria
archaea
eukaryotes
metal ions
xenobiotics
drugs

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