Knowledge (XXG)

SHFM1

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The product of this gene has been localized within the split hand/split foot malformation locus SHFM1 at chromosome 7. It has been proposed to be a candidate gene for the autosomal dominant form of the heterogeneous limb developmental disorder split hand/split foot malformation type 1. In addition,
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Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, Berriz GF, Gibbons FD, Dreze M, Ayivi-Guedehoussou N, Klitgord N, Simon C, Boxem M, Milstein S, Rosenberg J, Goldberg DS, Zhang LV, Wong SL, Franklin G, Li S, Albala JS, Lim J, Fraughton C, Llamosas E, Cevik S, Bex C, Lamesch P,
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Sikorski RS, Vandenhaute J, Zoghbi HY, Smolyar A, Bosak S, Sequerra R, Doucette-Stamm L, Cusick ME, Hill DE, Roth FP, Vidal M (October 2005). "Towards a proteome-scale map of the human protein-protein interaction network".
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Yang H, Jeffrey PD, Miller J, Kinnucan E, Sun Y, Thoma NH, Zheng N, Chen PL, Lee WH, Pavletich NP (September 2002). "BRCA2 function in DNA binding and recombination from a BRCA2-DSS1-ssDNA structure".
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Yang H, Jeffrey PD, Miller J, Kinnucan E, Sun Y, Thoma NH, Zheng N, Chen PL, Lee WH, Pavletich NP (September 2002). "BRCA2 function in DNA binding and recombination from a BRCA2-DSS1-ssDNA structure".
224: 1175:"Characterization of the split hand/split foot malformation locus SHFM1 at 7q21.3-q22.1 and analysis of a candidate gene for its expression during limb development" 722: 149: 703: 1447:"Interaction between the product of the breast cancer susceptibility gene BRCA2 and DSS1, a protein functionally conserved from yeast to mammals" 1394:"SEM1, a homologue of the split hand/split foot malformation candidate gene Dss1, regulates exocytosis and pseudohyphal differentiation in yeast" 1233:"Interaction between the product of the breast cancer susceptibility gene BRCA2 and DSS1, a protein functionally conserved from yeast to mammals" 1853: 1829: 1708: 1106: 1088: 52: 210: 1328:
Sharland M, Patton MA, Hill L (June 1991). "Ectrodactyly of hands and feet in a child with a complex translocation including 7q21.2".
187: 959: 1608:"Integrator, a multiprotein mediator of small nuclear RNA processing, associates with the C-terminal repeat of RNA polymerase II" 1217: 1758: 1075: 1071: 1743: 1728: 1649:
Kharrat N, Ayadi I, Rebaï A (December 2006). "Sample size computation for association studies using case-parents design".
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Crackower MA, Scherer SW, Rommens JM, Hui CC, Poorkaj P, Soder S, Cobben JM, Hudgins L, Evans JP, Tsui LC (May 1996).
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it has been shown to directly interact with BRCA2. It also may play a role in the completion of the cell cycle.
767: 137: 748: 1126:"Bilateral split hand and split foot malformation in a boy with a de novo interstitial deletion of 7q21.3" 1848: 1815: 1694: 1570: 1497: 1405: 1289: 116: 912: 908: 898: 894: 890: 886: 1674: 1637: 1594: 161: 937: 916: 882: 862: 841: 548:
antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
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Sanger Centre, The; Washington University Genome Sequencing Cente, The (November 1998).
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Marston NJ, Richards WJ, Hughes D, Bertwistle D, Marshall CJ, Ashworth A (July 1999).
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Marston NJ, Richards WJ, Hughes D, Bertwistle D, Marshall CJ, Ashworth A (July 1999).
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Baillat D, Hakimi MA, Näär AM, Shilatifard A, Cooch N, Shiekhattar R (October 2005).
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regulation of transcription from RNA polymerase II promoter in response to hypoxia
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National Center for Biotechnology Information, U.S. National Library of Medicine
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National Center for Biotechnology Information, U.S. National Library of Medicine
1624: 1607: 1527:"Sem1p is a novel subunit of the 26 S proteasome from Saccharomyces cerevisiae" 1398:
Proceedings of the National Academy of Sciences of the United States of America
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Jäntti J, Lahdenranta J, Olkkonen VM, Söderlund H, Keränen S (February 1999).
195: 145: 1341: 667: 262: 249: 153: 1670: 1633: 1590: 1552: 1543: 1526: 1517: 1480: 1309: 1266: 1462: 1437: 1418: 1384: 1349: 1248: 1200: 1191: 1174: 1159: 999: 994: 1375: 1358: 1141: 983: 816: 797: 793: 1582: 1662: 1218:"Entrez Gene: SHFM1 split hand/foot malformation (ectrodactyly) type 1" 1015: 779: 734: 568:
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
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proteasome-mediated ubiquitin-dependent protein catabolic process
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negative regulation of G2/M transition of mitotic cell cycle
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Roberts SH, Hughes HE, Davies SJ, Meredith AL (July 1991).
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double-strand break repair via homologous recombination
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positive regulation of canonical Wnt signaling pathway
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negative regulation of canonical Wnt signaling pathway
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anaphase-promoting complex-dependent catabolic process
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regulation of hematopoietic stem cell differentiation
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stimulatory C-type lectin receptor signaling pathway
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Wnt signaling pathway, planar cell polarity pathway
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regulation of cellular amino acid metabolic process
1525:Sone T, Saeki Y, Toh-e A, Yokosawa H (July 2004). 1067: 1065: 1063: 633:regulation of mitotic cell cycle phase transition 233: 573:tumor necrosis factor-mediated signaling pathway 1072:GRCm38: Ensembl release 89: ENSMUSG00000042541 482:proteasome regulatory particle, lid subcomplex 1823: 1702: 8: 1830: 1816: 1709: 1695: 1687: 878: 663: 438: 274: 173: 63: 1767:: STRUCTURE OF A BRCA2-DSS1-SSDNA COMPLEX 1623: 1542: 1470: 1427: 1417: 1374: 1359:"Toward a complete human genome sequence" 1256: 1190: 1149: 1212: 1210: 618:interleukin-1-mediated signaling pathway 1724: 1059: 523:post-translational protein modification 18: 583:Fc-epsilon receptor signaling pathway 238: 199: 194: 7: 1780: 1778: 1330:American Journal of Medical Genetics 355:endothelial cell of lymphatic vessel 1752:: Structure of a BRCA2-DSS1 complex 1737:: STRUCTURE OF A BRCA2-DSS1 COMPLEX 1531:The Journal of Biological Chemistry 1012:26S proteasome complex subunit DSS1 1802:. You can help Knowledge (XXG) by 927: 852: 831: 807: 784: 758: 739: 713: 694: 408: 331: 312: 291: 14: 1018:that in humans is encoded by the 598:T cell receptor signaling pathway 1782: 1757: 1742: 1727: 412: 222: 215: 209: 186: 27: 16:Gene of the species Homo sapiens 1451:Molecular and Cellular Biology 1237:Molecular and Cellular Biology 423:More reference expression data 1: 1854:Human chromosome 7 gene stubs 1510:10.1126/science.297.5588.1837 1302:10.1126/science.297.5588.1837 207: 593:regulation of mRNA stability 1130:Journal of Medical Genetics 1870: 1777: 1625:10.1016/j.cell.2005.08.019 538:protein polyubiquitination 367:medial ganglionic eminence 1722: 1107:"Mouse PubMed Reference:" 1089:"Human PubMed Reference:" 998: 993: 989: 982: 966: 949: 934: 905: 874: 859: 838: 827: 814: 810: 791: 787: 778: 765: 761: 746: 742: 733: 720: 716: 701: 697: 688: 673: 666: 662: 646: 441: 437: 420: 411: 402: 394: 359:medullary collecting duct 343: 334: 319: 315: 285: 277: 273: 256: 243: 206: 185: 176: 172: 127: 124: 114: 107: 102: 71: 66: 49: 44: 39: 35: 26: 21: 1179:Human Molecular Genetics 1042:SHFM1 has been shown to 518:protein deubiquitination 508:mRNA export from nucleus 1342:10.1002/ajmg.1320390410 603:transmembrane transport 578:NIK/NF-kappaB signaling 1544:10.1074/jbc.M403165200 1463:10.1128/mcb.19.7.4633 1419:10.1073/pnas.96.3.909 1249:10.1128/mcb.19.7.4633 960:Chr 6: 6.56 – 6.58 Mb 347:mandibular prominence 1376:10.1101/gr.8.11.1097 1142:10.1136/jmg.28.7.479 351:maxillary prominence 201:Chromosome 6 (mouse) 67:List of PDB id codes 40:Available structures 1651:Journal of Genetics 1583:10.1038/nature04209 1575:2005Natur.437.1173R 1502:2002Sci...297.1837Y 1410:1999PNAS...96..909J 1294:2002Sci...297.1837Y 1192:10.1093/hmg/5.5.571 513:proteasome assembly 1790:This article on a 1663:10.1007/BF02935329 768:ENSMUSG00000042541 501:Biological process 477:proteasome complex 472:integrator complex 465:Cellular component 449:Molecular function 1811: 1810: 1775: 1774: 1496:(5588): 1837–48. 1288:(5588): 1837–48. 1009: 1008: 1005: 1004: 978: 977: 945: 944: 924: 923: 870: 869: 849: 848: 823: 822: 804: 803: 774: 773: 755: 754: 729: 728: 710: 709: 658: 657: 433: 432: 429: 428: 398: 397: 390: 389: 328: 327: 269: 268: 98: 97: 94: 93: 50:Ortholog search: 1861: 1832: 1825: 1818: 1786: 1779: 1761: 1746: 1731: 1711: 1704: 1697: 1688: 1682: 1645: 1627: 1602: 1569:(7062): 1173–8. 1556: 1546: 1537:(27): 28807–16. 1521: 1484: 1474: 1441: 1431: 1421: 1388: 1378: 1369:(11): 1097–108. 1353: 1314: 1313: 1277: 1271: 1270: 1260: 1228: 1222: 1221: 1214: 1205: 1204: 1194: 1170: 1164: 1163: 1153: 1121: 1115: 1114: 1103: 1097: 1096: 1085: 1079: 1069: 991: 990: 962: 955: 940: 928: 919: 879: 875:RefSeq (protein) 865: 853: 844: 832: 808: 785: 759: 740: 714: 695: 664: 439: 425: 416: 409: 375:primitive streak 339: 337:Top expressed in 332: 313: 292: 275: 265: 252: 241: 226: 219: 213: 202: 190: 174: 168: 166:SEM1 - orthologs 119: 112: 89: 64: 58: 37: 36: 31: 19: 1869: 1868: 1864: 1863: 1862: 1860: 1859: 1858: 1839: 1838: 1837: 1836: 1776: 1771: 1768: 1762: 1753: 1747: 1738: 1732: 1718: 1715: 1685: 1648: 1605: 1559: 1524: 1487: 1444: 1391: 1363:Genome Research 1356: 1327: 1323: 1321:Further reading 1318: 1317: 1279: 1278: 1274: 1230: 1229: 1225: 1216: 1215: 1208: 1172: 1171: 1167: 1123: 1122: 1118: 1105: 1104: 1100: 1087: 1086: 1082: 1070: 1061: 1056: 1040: 1031: 1000:View/Edit Mouse 995:View/Edit Human 958: 953: 950:Location (UCSC) 936: 915: 911: 907: 901: 897: 893: 889: 885: 861: 840: 796: 749:ENSG00000127922 642: 496: 460: 456:protein binding 421: 386: 381: 377: 373: 369: 365: 361: 357: 353: 349: 335: 324: 260: 247: 239: 229: 228: 227: 220: 200: 177:Gene location ( 128: 115: 108: 73: 51: 17: 12: 11: 5: 1867: 1865: 1857: 1856: 1851: 1841: 1840: 1835: 1834: 1827: 1820: 1812: 1809: 1808: 1787: 1773: 1772: 1770: 1769: 1763: 1756: 1754: 1748: 1741: 1739: 1733: 1726: 1723: 1720: 1719: 1716: 1714: 1713: 1706: 1699: 1691: 1684: 1683: 1646: 1603: 1557: 1522: 1485: 1457:(7): 4633–42. 1442: 1389: 1354: 1324: 1322: 1319: 1316: 1315: 1272: 1243:(7): 4633–42. 1223: 1206: 1165: 1116: 1098: 1080: 1058: 1057: 1055: 1052: 1039: 1036: 1030: 1027: 1007: 1006: 1003: 1002: 997: 987: 986: 980: 979: 976: 975: 973: 971: 964: 963: 956: 951: 947: 946: 943: 942: 932: 931: 925: 922: 921: 903: 902: 876: 872: 871: 868: 867: 857: 856: 850: 847: 846: 836: 835: 829: 825: 824: 821: 820: 812: 811: 805: 802: 801: 789: 788: 782: 776: 775: 772: 771: 763: 762: 756: 753: 752: 744: 743: 737: 731: 730: 727: 726: 718: 717: 711: 708: 707: 699: 698: 692: 686: 685: 680: 675: 671: 670: 660: 659: 656: 655: 644: 643: 641: 640: 635: 630: 625: 620: 615: 610: 605: 600: 595: 590: 585: 580: 575: 570: 565: 560: 555: 550: 545: 540: 535: 530: 525: 520: 515: 510: 504: 502: 498: 497: 495: 494: 489: 484: 479: 474: 468: 466: 462: 461: 459: 458: 452: 450: 446: 445: 435: 434: 431: 430: 427: 426: 418: 417: 406: 400: 399: 396: 395: 392: 391: 388: 387: 385: 384: 380: 379:abdominal wall 376: 372: 368: 364: 360: 356: 352: 348: 344: 341: 340: 329: 326: 325: 323: 320: 317: 316: 309: 308: 300: 289: 283: 282: 279:RNA expression 271: 270: 267: 266: 258: 254: 253: 245: 242: 237: 231: 230: 221: 214: 208: 204: 203: 198: 192: 191: 183: 182: 170: 169: 126: 122: 121: 113: 105: 104: 100: 99: 96: 95: 92: 91: 69: 68: 60: 59: 48: 42: 41: 33: 32: 24: 23: 15: 13: 10: 9: 6: 4: 3: 2: 1866: 1855: 1852: 1850: 1847: 1846: 1844: 1833: 1828: 1826: 1821: 1819: 1814: 1813: 1807: 1805: 1801: 1797: 1793: 1788: 1785: 1781: 1766: 1760: 1755: 1751: 1745: 1740: 1736: 1730: 1725: 1721: 1712: 1707: 1705: 1700: 1698: 1693: 1692: 1689: 1680: 1676: 1672: 1668: 1664: 1660: 1657:(3): 187–91. 1656: 1652: 1647: 1643: 1639: 1635: 1631: 1626: 1621: 1618:(2): 265–76. 1617: 1613: 1609: 1604: 1600: 1596: 1592: 1588: 1584: 1580: 1576: 1572: 1568: 1564: 1558: 1554: 1550: 1545: 1540: 1536: 1532: 1528: 1523: 1519: 1515: 1511: 1507: 1503: 1499: 1495: 1491: 1486: 1482: 1478: 1473: 1468: 1464: 1460: 1456: 1452: 1448: 1443: 1439: 1435: 1430: 1425: 1420: 1415: 1411: 1407: 1404:(3): 909–14. 1403: 1399: 1395: 1390: 1386: 1382: 1377: 1372: 1368: 1364: 1360: 1355: 1351: 1347: 1343: 1339: 1335: 1331: 1326: 1325: 1320: 1311: 1307: 1303: 1299: 1295: 1291: 1287: 1283: 1276: 1273: 1268: 1264: 1259: 1254: 1250: 1246: 1242: 1238: 1234: 1227: 1224: 1219: 1213: 1211: 1207: 1202: 1198: 1193: 1188: 1184: 1180: 1176: 1169: 1166: 1161: 1157: 1152: 1147: 1143: 1139: 1136:(7): 479–81. 1135: 1131: 1127: 1120: 1117: 1112: 1108: 1102: 1099: 1094: 1090: 1084: 1081: 1077: 1073: 1068: 1066: 1064: 1060: 1053: 1051: 1049: 1045: 1037: 1035: 1028: 1026: 1024: 1021: 1017: 1013: 1001: 996: 992: 988: 985: 981: 974: 972: 969: 965: 961: 957: 952: 948: 941: 939: 933: 929: 926: 920: 918: 914: 910: 904: 900: 896: 892: 888: 884: 880: 877: 873: 866: 864: 858: 854: 851: 845: 843: 837: 833: 830: 828:RefSeq (mRNA) 826: 819: 818: 813: 809: 806: 800: 799: 795: 790: 786: 783: 781: 777: 770: 769: 764: 760: 757: 751: 750: 745: 741: 738: 736: 732: 725: 724: 719: 715: 712: 706: 705: 700: 696: 693: 691: 687: 684: 681: 679: 676: 672: 669: 665: 661: 654: 650: 645: 639: 636: 634: 631: 629: 626: 624: 621: 619: 616: 614: 611: 609: 606: 604: 601: 599: 596: 594: 591: 589: 586: 584: 581: 579: 576: 574: 571: 569: 566: 564: 561: 559: 556: 554: 551: 549: 546: 544: 541: 539: 536: 534: 531: 529: 526: 524: 521: 519: 516: 514: 511: 509: 506: 505: 503: 500: 499: 493: 490: 488: 485: 483: 480: 478: 475: 473: 470: 469: 467: 464: 463: 457: 454: 453: 451: 448: 447: 444: 443:Gene ontology 440: 436: 424: 419: 415: 410: 407: 405: 401: 393: 382: 378: 374: 371:hair follicle 370: 366: 363:body of femur 362: 358: 354: 350: 346: 345: 342: 338: 333: 330: 321: 318: 314: 311: 310: 307: 305: 301: 299: 298: 294: 293: 290: 288: 284: 280: 276: 272: 264: 259: 255: 251: 246: 236: 232: 225: 218: 212: 205: 197: 193: 189: 184: 180: 175: 171: 167: 163: 159: 155: 151: 147: 143: 139: 135: 131: 123: 118: 111: 106: 101: 90: 88: 84: 80: 76: 70: 65: 62: 61: 57: 54: 47: 43: 38: 34: 30: 25: 20: 1804:expanding it 1796:chromosome 7 1789: 1764: 1749: 1734: 1654: 1650: 1615: 1611: 1566: 1562: 1534: 1530: 1493: 1489: 1454: 1450: 1401: 1397: 1366: 1362: 1336:(4): 413–4. 1333: 1329: 1285: 1281: 1275: 1240: 1236: 1226: 1185:(5): 571–9. 1182: 1178: 1168: 1133: 1129: 1119: 1110: 1101: 1092: 1083: 1041: 1038:Interactions 1032: 1019: 1011: 1010: 935: 913:NP_001336631 909:NP_001336630 906: 899:NP_001336629 895:NP_001336627 891:NP_001188380 887:NP_001188379 860: 839: 815: 792: 766: 747: 721: 702: 682: 677: 533:MAPK cascade 302: 295: 125:External IDs 72: 1849:Human genes 1717:PDB gallery 487:nucleoplasm 240:6|6 A1 103:Identifiers 1843:Categories 1078:, May 2017 1054:References 306:(ortholog) 261:6,578,663 248:6,557,294 146:HomoloGene 1794:on human 938:NP_033195 917:NP_006295 883:NP_006295 863:NM_009169 842:NM_006304 668:Orthologs 154:GeneCards 1671:17406092 1642:18069461 1634:16239144 1591:16189514 1553:15117943 1518:12228710 1481:10373512 1310:12228710 1267:10373512 1074:– 1044:interact 1029:Function 984:Wikidata 647:Sources: 1599:4427026 1571:Bibcode 1498:Bibcode 1490:Science 1438:9927667 1406:Bibcode 1385:9847074 1350:1877619 1290:Bibcode 1282:Science 1201:8733122 1160:1895319 1151:1016960 1076:Ensembl 1016:protein 780:UniProt 735:Ensembl 674:Species 653:QuickGO 492:cytosol 281:pattern 110:Aliases 1679:666139 1677:  1669:  1640:  1632:  1597:  1589:  1563:Nature 1551:  1516:  1479:  1469:  1436:  1426:  1383:  1348:  1308:  1265:  1255:  1199:  1158:  1148:  970:search 968:PubMed 817:P60897 798:Q6ZVN7 794:P60896 690:Entrez 404:BioGPS 383:dermis 142:109238 134:601285 1798:is a 1675:S2CID 1638:S2CID 1595:S2CID 1472:84261 1429:15324 1258:84261 1048:BRCA2 1046:with 1020:SHFM1 1014:is a 723:20422 683:Mouse 678:Human 649:Amigo 304:Mouse 297:Human 244:Start 179:Mouse 150:38165 1800:stub 1792:gene 1765:1mje 1750:1miu 1735:1iyj 1667:PMID 1630:PMID 1612:Cell 1587:PMID 1549:PMID 1514:PMID 1477:PMID 1434:PMID 1381:PMID 1346:PMID 1306:PMID 1263:PMID 1197:PMID 1156:PMID 1023:gene 704:7979 287:Bgee 235:Band 196:Chr. 158:SEM1 130:OMIM 117:SEM1 87:3T5X 83:1MJE 79:1MIU 75:1IYJ 56:RCSB 53:PDBe 22:SEM1 1659:doi 1620:doi 1616:123 1579:doi 1567:437 1539:doi 1535:279 1506:doi 1494:297 1467:PMC 1459:doi 1424:PMC 1414:doi 1371:doi 1338:doi 1298:doi 1286:297 1253:PMC 1245:doi 1187:doi 1146:PMC 1138:doi 954:n/a 322:n/a 257:End 162:OMA 138:MGI 46:PDB 1845:: 1673:. 1665:. 1655:85 1653:. 1636:. 1628:. 1614:. 1610:. 1593:. 1585:. 1577:. 1565:. 1547:. 1533:. 1529:. 1512:. 1504:. 1492:. 1475:. 1465:. 1455:19 1453:. 1449:. 1432:. 1422:. 1412:. 1402:96 1400:. 1396:. 1379:. 1365:. 1361:. 1344:. 1334:39 1332:. 1304:. 1296:. 1284:. 1261:. 1251:. 1241:19 1239:. 1235:. 1209:^ 1195:. 1181:. 1177:. 1154:. 1144:. 1134:28 1132:. 1128:. 1109:. 1091:. 1062:^ 1050:. 1025:. 651:/ 263:bp 250:bp 160:; 156:: 152:; 148:: 144:; 140:: 136:; 132:: 85:, 81:, 77:, 1831:e 1824:t 1817:v 1806:. 1710:e 1703:t 1696:v 1681:. 1661:: 1644:. 1622:: 1601:. 1581:: 1573:: 1555:. 1541:: 1520:. 1508:: 1500:: 1483:. 1461:: 1440:. 1416:: 1408:: 1387:. 1373:: 1367:8 1352:. 1340:: 1312:. 1300:: 1292:: 1269:. 1247:: 1220:. 1203:. 1189:: 1183:5 1162:. 1140:: 1113:. 1095:. 181:) 164::

Index


PDB
PDBe
RCSB
1IYJ
1MIU
1MJE
3T5X
Aliases
SEM1
OMIM
601285
MGI
109238
HomoloGene
38165
GeneCards
SEM1
OMA
SEM1 - orthologs
Mouse
Chromosome 6 (mouse)
Chr.
Chromosome 6 (mouse)
Genomic location for SEM1
Genomic location for SEM1
Band
bp
bp
RNA expression

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