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823:(small integral membrane protein 15) is a protein in humans that is encoded by the SMIM15 gene. It is a transmembrane protein that interacts with PBX4. Deletions where SMIM15 is located have produced mental defects and physical deformities. The gene has been found to have ubiquitous but variable expression in many tissues throughout the body.
1023:
There is only one interacting protein currently identified. This protein is PBX4 which is known for playing critical roles in embryonic development and cellular differentiation both as Hox cofactors and through Hox - independent pathways. PBX4 is also a member of the pre-B cell leukemia transcription
1213:
Jaillard, Sylvie; Andrieux, Joris; Plessis, Ghislaine; Krepischi, Ana C. V.; Lucas, Josette; David, Véronique; Le Brun, Marine; Bertola, Debora R.; David, Albert; Belaud-Rotureau, Marc-Antoine; Mosser, Jean (April 2011). "5q12.1 deletion: delineation of a phenotype including mental retardation and
1032:
Deletion of 5q12.1 can lead to the development of mental retardation and ocular defects. Another deletion in the 5q12.1 - 5q12.3 region lead to mental-motor retardation and dysmorphia. In terms of diseases, Caries is a multifactorial disease and little is still known about the host genetic factors
954:
The predicted sites for glycation are at positions: 5, 43, 58, 72, 73. Glycation can lead to the creation of AGE (advanced glycation end products. Glycation is a process in which proteins react with reducing sugar molecules, which will lead to impairment of the function and changes the
1859:
975:
SMIM15 has been found to have ubiquitous but variable expression in many different tissues throughout the body. it has the highest level of expression within the prostate. There are lower levels of expression within skeletal muscles compared to other tissues within the body.
1315:
831:
Small integral membrane protein 15 (SMIM15) is a protein in humans that is encoded by the SMIM15 gene. It has also been known under the aliases C5orf43 and GC05M060454. It is made up of 74 amino acids. It is located at 5q12.1. SMIM15 has 4741 base pairs with three exons
1041:
SMIM15 is conserved in both vertebrates and invertebrates. It is not found in insects or fungi. SMIM15 does not have any paralogs and the farthest known relative of the Homo sapiens SMIM15 is found within
Trichoplax sp.H2 with a date of divergence 747 MYA
1006:
There are no known micro-RNA targets in the 3' UTR. mRNA secondary structures exhibited a high number of predicted stem-loop structures. This could indicate high stability of the mRNA transcript, and some binding sites for regulatory mechanisms.
930:
The secondary structure for SMIM15 is largely alpha-helical with alpha helices making up 62.16% (46 amino acids) of the protein. Random coil makes up 25.68% (19 amino acids) and extended strands make up 12.16% (9 amino acids) of the SMIM15 protein.
902:
Molecular weight of SMIM15 has been found to be 8.6 kdal and it has a pI of 9.82. There are no significant compositional features compositional features like charge clusters, hydrophobic segments, charge runs, patterns, multiplets or periodicities.
958:
Finally, there are four predicted sites for phosphorylation of tyrosine on position 20, threonine on positions 25 and 31, and serine on position 41. Phosphorylation will affect different cellular processes and thus regulating protein function.
997:
The
Promoter region for SMIM15 is 1049 base pairs long. and it is known as GXP_922465. There are 431 different transcription binding factor sites, some of these binding factors include GATA1, TGIF, LMX1A, and NKX61
1268:
Cetin, Zafer; Yakut, Sezin; Clark, Ozden Altiok; Mihci, Ercan; Berker, Sibel; Luleci, Guven (1 March 2013). "A 5q12.1-5q12.3 microdeletion in a case with a balanced exceptional complex chromosomal rearrangement".
1759:
950:
The predicted sites for sumoylation are at positions: 5, 67, 69, 72, 73. It is known to affect protein stability, protect from degradation, cellular localization, protein-protein interactions and DNA binding.
1983:
Shimizu, T.; Deeley, K.; Briseño-Ruiz, J.; Faraco, I. M.; Poletta, F. A.; Brancher, J. A.; Pecharki, G. D.; Küchler, E. C.; Tannure, P. N.; Lips, A.; Vieira, T. C. S. (2013).
1349:
249:
148:
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947:
There are a number of post-translational modifications of the SMIM15 protein, which are shown in the
Conceptual Translation of Human SMIM15 as shown in figure 1.
989:
SMIM15 has one CpG island within the promoter. SMIM15 has lower levels of H3K4Me1 but higher levels of H3K4Me3 and H3K27Ac across all of their cell lines
1534:
542:
561:
71:
899:
Primary sequence of SMIM15 is: MFDIKAWAEY VVEWAAKDPY GFLTTVILAL TPLFLASAVL SWKLAKMIEA REKEQKKKQK. RQENIAKAKR LKKD
967:
SMIM15 has a transmembrane domain found within amino acids 20–42. There are cleavage sites at the C-terminous and nuclear localization signals.
1100:
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1605:"The role of glycation in the pathogenesis of aging and its prevention through herbal products and physical exercise"
1033:
influencing susceptibility. The interval 5q12.1-5q13.3 as linked to low caries susceptibility in
Filipino families.
241:
140:
922:
The other domains include a luminal domain from amino acids 1 - 19 and cytosolic domain from amino acids 43 - 74.
606:
59:
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1934:
Laurent, Audrey; Bihan, Réjane; Omilli, Francis; Deschamps, Stéphane; Pellerin, Isabelle (2008).
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2004:
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39:
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SMIM15 has zero isoforms The 5' UTR region spans 420 bases and the 3' UTR spans 2243 bases.
2012:
1996:
1947:
1698:
1632:
1616:
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328:
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1156:"SMIM15 small integral membrane protein 15 [Homo sapiens (human)] - Gene - NCBI"
2080:
2017:
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National Center for
Biotechnology Information, U.S. National Library of Medicine
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National Center for
Biotechnology Information, U.S. National Library of Medicine
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2008:
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1375:"small integral membrane protein 15 [Homo sapiens] - Protein - NCBI"
506:
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1549:"GPS-SUMO: Prediction of SUMOylation Sites & SUMO-interaction Motifs"
1227:
792:
651:
632:
1985:"Fine-mapping of 5q12.1-13.3 unveils new genetic contributors to caries"
618:
573:
2000:
1399:
776:
528:
919:
There is one transmembrane domain located from amino acids 20 – 42.
1685:
Johansen, Morten Bo; Kiemer, Lars; Brunak, Søren (September 2006).
1316:"Human Gene SMIM15 (ENST00000339020.8) Description and Page Index"
1186:"PBX4 PBX homeobox 4 [Homo sapiens (human)] - Gene - NCBI"
910:
1835:"Tissue expression of SMIM15 - Summary - The Human Protein Atlas"
1860:"Human hg38 chr5:61,153,557-61,167,851 UCSC Genome Browser v397"
1556:
1603:
Kim, Chan-Sik; Park, Sok; Kim, Junghyun (30 September 2017).
2040:
1015:
The function of SMIM15 is currently not well understood.
1687:"Analysis and prediction of mammalian protein glycation"
311:
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1940:The International Journal of Developmental Biology
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1054:
1310:
1308:
844:Table 1. Exon Locations within Human SMIM15 mRNA
258:
157:
1609:Journal of Exercise Nutrition & Biochemistry
1453:"The Wayback Machine has not archived that URL"
1084:GRCm38: Ensembl release 89: ENSMUSG00000071180
1425:"SAPS < Sequence Statistics < EMBL-EBI"
50:, C5orf43, small integral membrane protein 15
8:
1936:"PBX proteins: much more than Hox cofactors"
1216:American Journal of Medical Genetics. Part A
1063:GRCh38: Ensembl release 89: ENSG00000188725
502:
299:
198:
95:
2016:
1951:
1702:
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2041:"TimeTree :: The Timescale of Life"
938:
842:
1050:
18:Mammalian protein found in Homo sapiens
1785:"ELM - Detail for TRG_NLS_Bipartite_1"
1533:: CS1 maint: archived copy as title (
1526:
1350:"Genomatix: Annotation & Analysis"
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451:endothelial cell of lymphatic vessel
1735:"5E9CF8E40000064EBE8DB075 expired"
1481:"5E97AC2D00000D9E239DE439 expired"
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915:Schematic of Human SMIM15 Domains
1002:Translational and mRNA stability
955:characteristics of the protein.
935:Post-translational modifications
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465:More reference expression data
1:
1400:"ExPASy - Compute pI/Mw tool"
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2071:Genes on human chromosome 5
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1283:10.1016/j.gene.2012.12.013
769:Chr 13: 108.18 – 108.19 Mb
1119:"Mouse PubMed Reference:"
1101:"Human PubMed Reference:"
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369:mucosa of paranasal sinus
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980:Regulation of expression
963:Subcellular localization
907:Domains and motifs
855:Start and End Locations
1621:10.20463/jenb.2017.0027
1579:"NetGlycate 1.0 Server"
762:Chr 5: 61.16 – 61.16 Mb
361:mucosa of sigmoid colon
1889:www.imexconsortium.org
1760:"Phosphorylation - US"
944:
916:
431:mesenteric lymph nodes
1953:10.1387/ijdb.072304al
1704:10.1093/glycob/cwl009
1028:Clinical Significance
942:
914:
852:Number of Base Pairs
435:epithelium of stomach
357:palpebral conjunctiva
226:Chromosome 13 (mouse)
1839:www.proteinatlas.org
1814:www.ncbi.nlm.nih.gov
1764:www.thermofisher.com
1553:sumosp.biocuckoo.org
1379:www.ncbi.nlm.nih.gov
1228:10.1002/ajmg.a.33758
1190:www.ncbi.nlm.nih.gov
1160:www.ncbi.nlm.nih.gov
1019:Interacting Proteins
888:61157704 – 61160199
877:61161088 – 61161227
866:61162217 – 61162468
124:Chromosome 5 (human)
1810:"GDS423 / 45795_at"
926:Secondary structure
845:
381:germinal epithelium
945:
917:
843:
607:ENSMUSG00000071180
88:SMIM15 - orthologs
2001:10.1159/000346278
1214:ocular defects".
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377:corpus epididymis
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1885:"Home < IMEx"
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1555:. Archived from
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1515:on 20 April 2022
1511:. Archived from
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598:
579:
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447:genital tubercle
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405:Top expressed in
400:
385:caput epididymis
345:
343:Top expressed in
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1989:Caries Research
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1910:"IntAct Portal"
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1667:, 25 March 2020
1665:Knowledge (XXG)
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1509:"Archived copy"
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1024:factor family.
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993:Transcriptional
987:
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809:View/Edit Mouse
804:View/Edit Human
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588:ENSG00000188725
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353:mucosa of ileum
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265:13|13 D2.1
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202:Gene location (
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99:Gene location (
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1995:(4): 273–283.
1975:
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1739:www.cbs.dtu.dk
1726:
1697:(9): 844–853.
1677:
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1583:www.cbs.dtu.dk
1570:
1559:on 10 May 2013
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1485:www.cbs.dtu.dk
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1404:web.expasy.org
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719:
715:
712:
708:
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699:
693:
689:
686:
680:
678:
672:
668:
665:
663:RefSeq (mRNA)
661:
654:
653:
648:
644:
641:
635:
634:
629:
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419:otolith organ
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136:
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102:
97:
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89:
85:
81:
77:
73:
69:
65:
61:
53:
48:
41:
36:
31:
27:
22:
16:
2048:. Retrieved
2044:
2035:
1992:
1988:
1978:
1943:
1939:
1929:
1917:. Retrieved
1913:
1904:
1892:. Retrieved
1888:
1879:
1867:. Retrieved
1863:
1854:
1842:. Retrieved
1838:
1829:
1817:. Retrieved
1813:
1804:
1792:. Retrieved
1788:
1779:
1767:. Retrieved
1763:
1754:
1742:. Retrieved
1738:
1729:
1694:
1691:Glycobiology
1690:
1680:
1669:, retrieved
1664:
1655:
1615:(3): 55–61.
1612:
1608:
1598:
1586:. Retrieved
1582:
1573:
1561:. Retrieved
1557:the original
1552:
1543:
1517:. Retrieved
1513:the original
1488:. Retrieved
1484:
1460:. Retrieved
1456:
1432:. Retrieved
1428:
1419:
1407:. Retrieved
1403:
1394:
1382:. Retrieved
1378:
1369:
1357:. Retrieved
1353:
1323:. Retrieved
1319:
1274:
1270:
1219:
1215:
1193:. Retrieved
1189:
1163:. Retrieved
1159:
1122:
1113:
1104:
1095:
1040:
1031:
1022:
1014:
1005:
996:
988:
974:
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957:
953:
949:
946:
929:
921:
918:
901:
898:
839:
830:
820:
819:
745:NP_001041715
742:
724:NP_001041714
721:
698:NM_001048250
695:
677:NM_001048249
674:
650:
631:
605:
586:
560:
541:
521:
516:
327:
320:
286:108,185,706
273:108,180,980
55:External IDs
15:
1946:(1): 9–20.
1661:"Glycation"
389:skin of arm
185:61,162,468
172:61,157,704
33:Identifiers
2065:Categories
1789:elm.eu.org
1457:elm.eu.org
1090:, May 2017
1069:, May 2017
1046:References
985:Epigenetic
971:Expression
427:left colon
331:(ortholog)
68:HomoloGene
2009:1421-976X
1962:0214-6282
1713:0959-6658
1629:2233-6834
1291:1879-0038
1236:1552-4833
507:Orthologs
76:GeneCards
2027:23363935
1970:18033668
1721:16762979
1647:29036767
1529:cite web
1299:23262338
1252:45371630
1244:21594994
1086:–
1065:–
1037:Homology
1011:Function
793:Wikidata
2018:3737367
1638:5643203
1462:29 June
1088:Ensembl
1067:Ensembl
895:Protein
619:UniProt
574:Ensembl
513:Species
423:utricle
306:pattern
64:1922866
40:Aliases
2025:
2015:
2007:
1968:
1960:
1719:
1711:
1645:
1635:
1627:
1297:
1289:
1250:
1242:
1234:
821:SMIM15
779:search
777:PubMed
652:Q3UTD9
633:Q7Z3B0
543:643155
529:Entrez
477:BioGPS
164:5q12.1
80:SMIM15
47:SMIM15
24:SMIM15
2081:Genes
2050:3 May
1919:3 May
1894:3 May
1869:3 May
1844:3 May
1819:3 May
1794:3 May
1769:3 May
1744:3 May
1671:3 May
1588:3 May
1563:3 May
1519:3 May
1490:3 May
1434:3 May
1409:3 May
1384:3 May
1359:3 May
1325:3 May
1248:S2CID
1195:3 May
1165:3 May
885:2496
849:Exon
562:75616
522:Mouse
517:Human
443:molar
329:Mouse
322:Human
269:Start
204:Mouse
168:Start
101:Human
72:90075
2052:2020
2023:PMID
2005:ISSN
1966:PMID
1958:ISSN
1921:2020
1896:2020
1871:2020
1846:2020
1821:2020
1796:2020
1771:2020
1746:2020
1717:PMID
1709:ISSN
1673:2020
1643:PMID
1625:ISSN
1590:2020
1565:2020
1535:link
1521:2020
1492:2020
1464:2023
1436:2020
1411:2020
1386:2020
1361:2020
1327:2020
1295:PMID
1287:ISSN
1271:Gene
1240:PMID
1232:ISSN
1220:155A
1197:2020
1167:2020
874:140
863:252
836:mRNA
827:Gene
415:hand
312:Bgee
260:Band
221:Chr.
159:Band
118:Chr.
2013:PMC
1997:doi
1948:doi
1699:doi
1633:PMC
1617:doi
1279:doi
1275:516
1224:doi
485:n/a
282:End
181:End
84:OMA
60:MGI
2067::
2043:.
2021:.
2011:.
2003:.
1993:47
1991:.
1987:.
1964:.
1956:.
1944:52
1942:.
1938:.
1912:.
1887:.
1862:.
1837:.
1812:.
1787:.
1762:.
1737:.
1715:.
1707:.
1695:16
1693:.
1689:.
1663:,
1641:.
1631:.
1623:.
1613:21
1611:.
1607:.
1581:.
1551:.
1531:}}
1527:{{
1500:^
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1352:.
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1293:.
1285:.
1273:.
1260:^
1246:.
1238:.
1230:.
1218:.
1205:^
1188:.
1175:^
1158:.
1131:^
1121:.
1103:.
1074:^
1053:^
882:3
871:2
860:1
288:bp
275:bp
187:bp
174:bp
82:;
78::
74:;
70::
66:;
62::
2054:.
2029:.
1999::
1972:.
1950::
1923:.
1898:.
1873:.
1848:.
1823:.
1798:.
1773:.
1748:.
1723:.
1701::
1649:.
1619::
1592:.
1567:.
1537:)
1523:.
1494:.
1466:.
1438:.
1413:.
1388:.
1363:.
1329:.
1301:.
1281::
1254:.
1226::
1199:.
1169:.
1125:.
1107:.
206:)
103:)
86::
Text is available under the Creative Commons Attribution-ShareAlike License. Additional terms may apply.
