Knowledge

Sjors Scheres

Source đź“ť

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Shi Y, Zhang W, Yang Y, Murzin AG, Falcon B, Kotecha A, van Beers M, Tarutani A, Kametani F, Garringer HJ, Vidal R, Hallinan GI, Lashley T, Saito Y, Murayama S, Yoshida M, Tanaka H, Kakita A, Ikeuchi T, Robinson AC, Mann DM, Kovacs GG, Revesz T, Ghetti B, Hasegawa M, Goedert M, Scheres SH (2021).
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Schweighauser M, Arseni D, Huang M, Lovestam S, Shi Y, Yang Y, Zhang W, Kotecha A, Garringer HJ, Vidal R, Hallinan GI, Newell KL, Tarutani A, Murayama S, Miyazaki M, Saito Y, Yoshida M, Hasegawa K, Lashley T, Revesz T, Kovacs GG, van Swieten J, Takao M, Hasegawa M, Ghetti B, Falcon B, Murzin AG,
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Nakane T, Kotecha A, Sente A, McMullan G, Masiulis S, Brown PM, Grigoras IT, Malinauskaite L, Malinauskas T, Miehling J, Uchanski T, Yu L, Karia D, Pechnikova EV, de Jong E, Keizer J, Bischoff M, McCormack J, Tiemeijer P, Hardwick SW, Chirgadze DY, Murshudov G, Aricescu AR, Scheres SH (2020).
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Yang Y, Arseni D, Zhang W, Huang M, Lovestam S, Schweighauser M, Kotecha A, Murzin AG, Peak-Chew SY, Macdonald J, Lavenir I, Garringer HJ, Gelpi E, Newell KL, Kovacs GG, Vidal R, Ghetti B, Falcon B, Scheres SH, Goedert M (2022).
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Besides developing algorithms for cryo-EM image processing, Scheres has also collaborated with experimental groups to solve important protein structures. For example, Xiaochen Bai, currently at
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determination by cryo-EM, which he implemented in the computer program RELION. In 2020, Scheres and collaborators used RELION to reach atomic resolution for a cryo-EM reconstruction of apo-
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Scheres SH, Gao H, Valle M, Herman GT, Eggermont PP, Frank J, Carazo JM (2007). "Disentangling Conformational States of Macromolecules in 3D-EM through Likelihood Optimization".
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Schweighauser M, Shi Y, Tarutani A, Kametani F, Murzin AG, Ghetti B, Matsubara T, Tomita T, Ando T, Hasegawa K, Murayama S, Yoshida M, Hasegawa M, Scheres SH, Goedert M (2020).
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Fitzpatrick AW, Falcon B, He S, Murzin AG, Murshudov G, Garringer HJ, Crowther RA, Ghetti B, Goedert M, Scheres SH (2017).
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with José Maria Carazo from 2003-2010, where he developed classification algorithms for
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Conditional Optimization: An N-particle formalism for protein structure refinement
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since 2014. He has been joint Head of the Division of Structural Studies of the
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Conditional Optimization: an N-particle approach to protein structure refinement
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Bai XC, Yan C, Yang G, Lu P, Ma D, Sun L, Zhou R, Scheres SH, Shi Y (2015).
275: 227:, Cambridge. There, he extended his maximum-likelihood methods to a general 196: 115: 1186: 969: 911: 854: 796: 738: 681: 624: 566: 517: 460: 27: 1873: 1643: 1391: 295: 236: 720: 663: 1883: 1055: 928:"Age-dependent formation of TMEM106B amyloid filaments in human brain" 870:"Structures of alpha-synuclein filaments from multiple system atrophy" 183:
in France for his undergraduate research thesis. He then came back to
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Scheres has been a member of the Board of Reviewing Editors for
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Members of the Royal Netherlands Academy of Arts and Sciences
1058:(in Dutch). Royal Netherlands Academy of Arts and Sciences 1980:
Zeitschrift für Kristallographie – New Crystal Structures
1008:"Structural Studies - MRC Laboratory of Molecular Biolog" 984:"Editors for Structural Biology and Molecular Biophysics" 223:. In 2010 Scheres was appointed as a group leader at the 1975:
Zeitschrift für Kristallographie – Crystalline Materials
254:. Since 2016, Scheres has worked closely together with 2156:
Members of the European Molecular Biology Organization
1868: 399:"Sjors Scheres - MRC Laboratory of Molecular Biology" 484:"A Bayesian view on cryo-EM structure determination" 2049: 2016: 1988: 1940: 1892: 1839: 1786: 1717: 1500: 1491: 1414: 1322: 1267: 1234: 125: 109: 91: 65: 42: 34: 18: 313:. In 2022, he was elected a foreign member of the 179:in The Netherlands, and spent nine months at the 755:"Structure-based classification of tauopathies" 213:Spanish National Center for Biotechnology (CNB) 78:Spanish National Center for Biotechnology (CNB) 640:"An atomic structure of human gamma-secretase" 583:"Single-particle cryo-EM at atomic resolution" 315:Royal Netherlands Academy of Arts and Sciences 1212: 1128:"Winners KNCV Gouden Medaille - KNCV English" 246:, in his group solved the structure of human 8: 2046: 1497: 1319: 1264: 1219: 1205: 1197: 375:"Sjors Scheres - Google Scholar Citations" 26: 15: 1176: 959: 901: 844: 786: 728: 671: 614: 556: 507: 338:Bijvoet Center for Biomolecular Research 163:(born 1975) is a Dutch scientist at the 2171:Dutch expatriates in the United Kingdom 366: 181:European Synchrotron Radiation Facility 309:since 2018. In 2021, he was elected a 270:from the brain of an individual with 7: 2113: 1453:Phase transformation crystallography 1960:Journal of Chemical Crystallography 1107:MRC Laboratory of Molecular Biology 1082:MRC Laboratory of Molecular Biology 403:MRC Laboratory of Molecular Biology 307:MRC Laboratory of Molecular Biology 260:MRC Laboratory of Molecular Biology 225:MRC Laboratory of Molecular Biology 165:MRC Laboratory of Molecular Biology 73:MRC Laboratory of Molecular Biology 14: 2112: 2101: 2100: 1707: 1032:"Sjors Scheres | Royal Society" 1902:Bilbao Crystallographic Server 926:Goedert M, Scheres SH (2022). 1: 221:Maximum likelihood estimation 217:Cryogenic electron microscopy 175:Scheres studied Chemistry at 2181:Fellows of the Royal Society 156:Sjors Hendrik Willem Scheres 1950:Crystal Growth & Design 1242:Timeline of crystallography 311:Fellow of the Royal Society 2197: 1761:Nuclear magnetic resonance 952:10.1038/s41586-022-04650-z 779:10.1038/s41586-021-03911-7 278:, as well as filaments of 219:(cryo-EM) images based on 195:, which was supervised by 2166:Utrecht University alumni 2096: 1965:Journal of Crystal Growth 1705: 894:10.1038/s41586-020-2317-6 607:10.1038/s41586-020-2829-0 549:10.1016/j.jsb.2012.09.006 500:10.1016/j.jmb.2011.11.010 121: 58: 25: 2176:Bijvoet Medal recipients 1831:Single particle analysis 1689:Hermann–Mauguin notation 250:in a collaboration with 1955:Crystallography Reviews 1799:Isomorphous replacement 1593:Lomer–Cottrell junction 1153:"365 days: Nature's 10" 837:10.1126/science.abm7285 292:Multiple system atrophy 209:Postdoctoral researcher 193:Protein Crystallography 1468:Spinodal decomposition 350:Gold medal KNCV (2015) 229:Empirical Bayes method 2151:Structural biologists 2008:Gregori Aminoff Prize 1804:Molecular replacement 336:Bijvoet medal of the 258:, who is also at the 1314:Structure prediction 356:who mattered in 2014 207:Scheres worked as a 1578:Cottrell atmosphere 1558:Partial dislocation 1302:Restriction theorem 1169:2014Natur.516..311. 1151:Callaway E (2014). 944:2022Natur.605..310S 886:2020Natur.585..464S 829:2022Sci...375..167Y 771:2021Natur.598..359S 721:10.1038/nature23002 713:2017Natur.547..185F 664:10.1038/nature14892 656:2015Natur.525..212B 599:2020Natur.587..152N 531:Scheres SH (2012). 482:Scheres SH (2012). 422:Scheres SH (2003). 327:Leeuwenhoek Lecture 284:Alzheimer's disease 272:Alzheimer's disease 1998:Carl Hermann Medal 1809:Molecular dynamics 1656:Defects in diamond 1651:Stone–Wales defect 1297:Reciprocal lattice 1259:Biocrystallography 379:scholar.google.com 185:Utrecht University 177:Utrecht University 83:Utrecht University 50:Utrecht University 2128: 2127: 2092: 2091: 1699:Thermal ellipsoid 1664: 1663: 1573:Frank–Read source 1533: 1532: 1399:Aperiodic crystal 1365: 1364: 1247:Crystallographers 1012:mrc-lmb.cam.ac.uk 938:(7909): 310–314. 880:(7825): 464–469. 823:(6577): 167–172. 765:(7880): 359–363. 593:(7832): 152–156. 233:Protein structure 161: 153: 152: 60:Scientific career 2188: 2116: 2115: 2104: 2103: 2047: 1970:Kristallografija 1824:Gerchberg–Saxton 1719:Characterisation 1711: 1694:Structure factor 1498: 1483:Ostwald ripening 1320: 1265: 1221: 1214: 1207: 1198: 1191: 1190: 1180: 1163:(7531): 311–19. 1148: 1142: 1141: 1139: 1138: 1124: 1118: 1117: 1115: 1114: 1099: 1093: 1092: 1090: 1089: 1074: 1068: 1067: 1065: 1063: 1052: 1046: 1045: 1043: 1042: 1036:royalsociety.org 1028: 1022: 1021: 1019: 1018: 1004: 998: 997: 995: 994: 980: 974: 973: 963: 922: 916: 915: 905: 865: 859: 858: 848: 807: 801: 800: 790: 749: 743: 742: 732: 707:(7662): 185–90. 692: 686: 685: 675: 650:(7568): 212–17. 635: 629: 628: 618: 577: 571: 570: 560: 528: 522: 521: 511: 479: 473: 472: 453:10.1038/nmeth992 436: 430: 429: 419: 413: 412: 410: 409: 395: 389: 388: 386: 385: 371: 159: 149: 146: 144: 142: 140: 138: 136: 134: 132: 111:Doctoral advisor 105: 30: 16: 2196: 2195: 2191: 2190: 2189: 2187: 2186: 2185: 2131: 2130: 2129: 2124: 2088: 2045: 2012: 1984: 1936: 1888: 1859:CrystalExplorer 1835: 1819:Phase retrieval 1782: 1713: 1712: 1703: 1660: 1639:Schottky defect 1538:Perfect crystal 1529: 1525:Abnormal growth 1487: 1473:Supersaturation 1436:Miscibility gap 1417: 1410: 1361: 1318: 1282:Bravais lattice 1263: 1230: 1228:Crystallography 1225: 1195: 1194: 1178:10.1038/516311a 1150: 1149: 1145: 1136: 1134: 1126: 1125: 1121: 1112: 1110: 1101: 1100: 1096: 1087: 1085: 1076: 1075: 1071: 1061: 1059: 1056:"Sjors Scheres" 1054: 1053: 1049: 1040: 1038: 1030: 1029: 1025: 1016: 1014: 1006: 1005: 1001: 992: 990: 982: 981: 977: 924: 923: 919: 867: 866: 862: 809: 808: 804: 751: 750: 746: 694: 693: 689: 637: 636: 632: 579: 578: 574: 537:J. Struct. Biol 530: 529: 525: 481: 480: 476: 438: 437: 433: 421: 420: 416: 407: 405: 397: 396: 392: 383: 381: 373: 372: 368: 363: 323: 288:Alpha-synuclein 264:Amyloid fibrils 248:Gamma secretase 205: 173: 167:Cambridge, UK. 129: 103: 87: 54: 43:Alma mater 21: 12: 11: 5: 2194: 2192: 2184: 2183: 2178: 2173: 2168: 2163: 2158: 2153: 2148: 2143: 2133: 2132: 2126: 2125: 2123: 2122: 2110: 2097: 2094: 2093: 2090: 2089: 2087: 2086: 2081: 2076: 2075: 2074: 2069: 2064: 2053: 2051: 2044: 2043: 2038: 2033: 2028: 2022: 2020: 2014: 2013: 2011: 2010: 2005: 2000: 1994: 1992: 1986: 1985: 1983: 1982: 1977: 1972: 1967: 1962: 1957: 1952: 1946: 1944: 1938: 1937: 1935: 1934: 1929: 1924: 1919: 1914: 1909: 1904: 1898: 1896: 1890: 1889: 1887: 1886: 1881: 1876: 1871: 1866: 1861: 1856: 1851: 1845: 1843: 1837: 1836: 1834: 1833: 1828: 1827: 1826: 1816: 1811: 1806: 1801: 1796: 1794:Direct methods 1790: 1788: 1784: 1783: 1781: 1780: 1779: 1778: 1773: 1763: 1758: 1757: 1756: 1751: 1741: 1740: 1739: 1734: 1723: 1721: 1715: 1714: 1706: 1704: 1702: 1701: 1696: 1691: 1686: 1681: 1679:Ewald's sphere 1676: 1671: 1665: 1662: 1661: 1659: 1658: 1653: 1648: 1647: 1646: 1641: 1631: 1630: 1629: 1624: 1622:Frenkel defect 1619: 1617:Bjerrum defect 1609: 1608: 1607: 1597: 1596: 1595: 1590: 1585: 1583:Peierls stress 1580: 1575: 1570: 1565: 1560: 1555: 1553:Burgers vector 1545: 1543:Stacking fault 1540: 1534: 1531: 1530: 1528: 1527: 1522: 1517: 1512: 1506: 1504: 1502:Grain boundary 1495: 1489: 1488: 1486: 1485: 1480: 1475: 1470: 1465: 1460: 1455: 1450: 1449: 1448: 1446:Liquid crystal 1443: 1438: 1433: 1422: 1420: 1412: 1411: 1409: 1408: 1407: 1406: 1396: 1395: 1394: 1384: 1383: 1382: 1377: 1366: 1363: 1362: 1360: 1359: 1354: 1349: 1344: 1339: 1334: 1328: 1326: 1317: 1316: 1311: 1309:Periodic table 1306: 1305: 1304: 1299: 1294: 1289: 1284: 1273: 1271: 1262: 1261: 1256: 1251: 1250: 1249: 1238: 1236: 1232: 1231: 1226: 1224: 1223: 1216: 1209: 1201: 1193: 1192: 1143: 1119: 1094: 1069: 1047: 1023: 999: 975: 917: 860: 802: 744: 687: 630: 572: 523: 474: 441:Nature Methods 431: 414: 390: 365: 364: 362: 359: 358: 357: 351: 348: 341: 334: 322: 319: 256:Michel Goedert 204: 201: 172: 169: 151: 150: 145:/sjors-scheres 141:/group-leaders 127: 123: 122: 119: 118: 113: 107: 106: 95: 89: 88: 86: 85: 80: 75: 69: 67: 63: 62: 56: 55: 53: 52: 46: 44: 40: 39: 36: 32: 31: 23: 22: 19: 13: 10: 9: 6: 4: 3: 2: 2193: 2182: 2179: 2177: 2174: 2172: 2169: 2167: 2164: 2162: 2159: 2157: 2154: 2152: 2149: 2147: 2146:Living people 2144: 2142: 2139: 2138: 2136: 2121: 2120: 2111: 2109: 2108: 2099: 2098: 2095: 2085: 2082: 2080: 2077: 2073: 2070: 2068: 2065: 2063: 2060: 2059: 2058: 2055: 2054: 2052: 2048: 2042: 2039: 2037: 2034: 2032: 2029: 2027: 2024: 2023: 2021: 2019: 2015: 2009: 2006: 2004: 2001: 1999: 1996: 1995: 1993: 1991: 1987: 1981: 1978: 1976: 1973: 1971: 1968: 1966: 1963: 1961: 1958: 1956: 1953: 1951: 1948: 1947: 1945: 1943: 1939: 1933: 1930: 1928: 1925: 1923: 1920: 1918: 1915: 1913: 1910: 1908: 1905: 1903: 1900: 1899: 1897: 1895: 1891: 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1471: 1469: 1466: 1464: 1461: 1459: 1458:Precipitation 1456: 1454: 1451: 1447: 1444: 1442: 1439: 1437: 1434: 1432: 1429: 1428: 1427: 1426:Phase diagram 1424: 1423: 1421: 1419: 1413: 1405: 1402: 1401: 1400: 1397: 1393: 1390: 1389: 1388: 1385: 1381: 1378: 1376: 1373: 1372: 1371: 1368: 1367: 1358: 1355: 1353: 1350: 1348: 1345: 1343: 1340: 1338: 1335: 1333: 1330: 1329: 1327: 1325: 1321: 1315: 1312: 1310: 1307: 1303: 1300: 1298: 1295: 1293: 1290: 1288: 1285: 1283: 1280: 1279: 1278: 1275: 1274: 1272: 1270: 1266: 1260: 1257: 1255: 1252: 1248: 1245: 1244: 1243: 1240: 1239: 1237: 1233: 1229: 1222: 1217: 1215: 1210: 1208: 1203: 1202: 1199: 1188: 1184: 1179: 1174: 1170: 1166: 1162: 1158: 1154: 1147: 1144: 1133: 1129: 1123: 1120: 1108: 1104: 1098: 1095: 1083: 1079: 1073: 1070: 1057: 1051: 1048: 1037: 1033: 1027: 1024: 1013: 1009: 1003: 1000: 989: 985: 979: 976: 971: 967: 962: 957: 953: 949: 945: 941: 937: 933: 929: 921: 918: 913: 909: 904: 899: 895: 891: 887: 883: 879: 875: 871: 864: 861: 856: 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29: 24: 20:Sjors Scheres 17: 2117: 2105: 2050:Associations 2018:Organisation 1510:Disclination 1441:Polymorphism 1404:Quasicrystal 1347:Orthorhombic 1287:Miller index 1235:Key concepts 1160: 1156: 1146: 1135:. 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Index


Utrecht University
MRC Laboratory of Molecular Biology
Spanish National Center for Biotechnology (CNB)
Utrecht University
Thesis
Conditional Optimization: an N-particle approach to protein structure refinement
Doctoral advisor
Piet Gros
www2.mrc-lmb.cam.ac.uk/group-leaders/n-to-s/sjors-scheres/
FRS
MRC Laboratory of Molecular Biology
Utrecht University
European Synchrotron Radiation Facility
Utrecht University
DPhil
Protein Crystallography
Piet Gros
Postdoctoral researcher
Spanish National Center for Biotechnology (CNB)
Cryogenic electron microscopy
Maximum likelihood estimation
MRC Laboratory of Molecular Biology
Empirical Bayes method
Protein structure
Ferritin
UTSW
Gamma secretase
Shi Yigong
Michel Goedert

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