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Small molecule

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339: 263:, which play a role in cell signaling, pigmentation and in defense against predation. Secondary metabolites are a rich source of biologically active compounds and hence are often used as research tools and leads for drug discovery. Examples of secondary metabolites include: 561:
The majority of drugs from the general reference set have molecular weights below 550. In contrast the molecular-weight distribution of oral antibacterial agents is bimodal: 340–450 Da but with another group in the 700–900 molecular weight
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agents. SMATs are new, broad-spectrum drugs that unify antibacterial, antiviral and anti-malarial activities into a single therapeutic that offers substantial cost benefits and logistic advantages for physicians and the military.
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administration. Small molecule drugs are also typically simpler to manufacture and cheaper for the purchaser. A downside is that not all targets are amenable to modification with small-molecule drugs; bacteria and
192:") has been recommended for oral small molecule drug candidates based on the observation that clinical attrition rates are significantly reduced if the molecular weight is kept below this limit. 542: 617:
Veber DF, Johnson SR, Cheng HY, Smith BR, Ward KW, Kopple KD (June 2002). "Molecular properties that influence the oral bioavailability of drug candidates".
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limit for a small molecule is approximately 900 daltons, which allows for the possibility to rapidly diffuse across cell membranes so that it can reach
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Table 5.13: Route of Administration: Small Molecules: oral administration usually possible; Biomolecules: Usually administered parenterally
741: 78:, and monosaccharides, respectively) are often considered small molecules. Small molecules may be used as research tools to probe 440: 417: 226:. Small molecules are more likely to be absorbed, although some of them are only absorbed after oral administration if given as 91: 409: 574:
Arkin MR, Wells JA (April 2004). "Small-molecule inhibitors of protein-protein interactions: progressing towards the dream".
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Leeson PD, Springthorpe B (November 2007). "The influence of drug-like concepts on decision-making in medicinal chemistry".
1085: 219: 494: 416:, which promotes cancer, making it a useful investigative tool. There is also interest in creating small molecule 1075: 436: 432: 1059: 235: 215: 1080: 864:"Sonic hedgehog and other soluble factors from differentiating embryoid bodies inhibit pancreas development" 177: 169: 626: 238:
is that many small molecules can be taken orally whereas biologics generally require injection or another
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sites of action. This molecular weight cutoff is also a necessary but insufficient condition for oral
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Introduction to Biological and Small Molecule Drug Research and Development: theory and case studies
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cells. In addition to intestinal permeability, the molecule must also possess a reasonably rapid
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are not small molecules, although their constituent monomers (ribo- or deoxyribonucleotides,
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Lipinski CA (December 2004). "Lead-and drug-like compounds: the rule-of-five revolution".
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usually restricts the term "small molecule" to molecules that bind specific biological
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A variety of organisms including bacteria, fungi, and plants, produce small molecule
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Most pharmaceuticals are small molecules, although some drugs can be proteins (e.g.,
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that may regulate a biological process, with a size on the order of 1 nm. Many
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to quantify the reaction affinities and kinetic properties and also any induced
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in farming, and in many other roles. These compounds can be natural (such as
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Cell culture example of a small molecule as a tool instead of a protein. In
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can be characterised using a variety of analytical techniques such as
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are small molecules; the terms are equivalent in the literature.
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Mfopou JK, De Groote V, Xu X, Heimberg H, Bouwens L (May 2007).
374: 136:); they may have a beneficial effect against a disease (such as 117: 748:(Kindle ed.). New York: Academic Press. pp. 161–203. 90:. Some can inhibit a specific function of a protein or disrupt 467: 543:"Chemical properties of antibacterials and their uniqueness" 981:
Wienken CJ, Baaske P, Rothbauer U, Braun D, Duhr S (2010).
424:, examples include wrenchnolol (a wrench shaped molecule). 385:
Enzymes and receptors are often activated or inhibited by
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Ngo, Huy X.; Garneau-Tsodikova, Sylvie (23 April 2018).
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pathway inhibited, which can be done by adding to the
912: 744:. In Ganellin CR, Jefferis R, Roberts SM (eds.). 27:Organic molecule with a weight of ≤1000 daltons 361:signaling pathway must be activated while the 8: 408:An example is the teratogen and carcinogen 108:, altering the activity or function of the 412:, which is a plant terpene that activates 1058:at the U.S. National Library of Medicine 1006: 957: 879: 813: 630: 337: 530: 247:are often resistant to their effects. 841:. Vol. 36. Amsterdam: Elsevier. 839:Studies in Natural Products Chemistry 7: 547:Antibiotic Discovery and Development 545:. In Dougherty TJ, Pucci MJ (eds.). 782:"What are the drugs of the future?" 940:Koh JT, Zheng J (September 2007). 754:10.1016/B978-0-12-397176-0.00005-4 664:Drug Discovery Today: Technologies 234:(SMDs) have over "large molecule" 46:is a low molecular weight (≤ 1000 25: 919:. New York: J. Wiley & Sons. 140:) or may be detrimental (such as 441:dual polarisation interferometry 418:artificial transcription factors 410:phorbol 12-myristate 13-acetate 1034:. San Francisco Business Times 180:into water and adequate water 1: 699:Nature Reviews Drug Discovery 576:Nature Reviews Drug Discovery 1032:"Bio-defense company re-ups" 837:Atta-ur-Rahman, ed. (2012). 549:. Springer. pp. 801–2. 375:Hedgehog interacting protein 92:protein–protein interactions 881:10.1634/stemcells.2006-0720 676:10.1016/j.ddtec.2004.11.007 1102: 199: 86:in the development of new 470:signatures found in many 451:Anti-genomic therapeutics 437:microscale thermophoresis 433:surface plasmon resonance 391:small molecule inhibitors 218:). With the exception of 216:biologic medical products 132:) or artificial (such as 1060:Medical Subject Headings 1056:Small+Molecule+Libraries 911:Voet JG, Voet D (1995). 466:technology that targets 397:, which can bind to the 495:Lipinski's rule of five 462:, or SMAT, refers to a 170:transcellular transport 152:Molecular weight cutoff 445:conformational changes 382: 220:therapeutic antibodies 18:Small organic compound 341: 284:Nonribosomal peptides 257:secondary metabolites 251:Secondary metabolites 230:. One advantage that 200:Further information: 186:first pass metabolism 130:secondary metabolites 541:Macielag MJ (2012). 232:small molecule drugs 184:and moderate to low 999:2010NatCo...1..100W 202:Pharmaceutical drug 178:rate of dissolution 172:through intestinal 80:biological function 1086:Induced stem cells 1030:Levine DS (2003). 1008:10.1038/ncomms1093 798:10.1039/c8md90019a 740:Samanen J (2013). 472:biological warfare 387:endogenous protein 383: 348:pancreatic lineage 88:therapeutic agents 959:10.1021/cb700183s 926:978-0-471-58651-7 848:978-0-444-53836-9 763:978-0-12-397176-0 641:10.1021/jm020017n 556:978-1-4614-1400-1 168:as it allows for 60:Larger structures 32:molecular biology 16:(Redirected from 1093: 1076:Plant physiology 1044: 1043: 1041: 1039: 1027: 1021: 1020: 1010: 978: 972: 971: 961: 937: 931: 930: 918: 908: 902: 901: 883: 859: 853: 852: 834: 828: 827: 817: 777: 771: 770: 737: 731: 730: 694: 688: 687: 659: 653: 652: 634: 614: 608: 607: 571: 565: 564: 538: 510:Neurotransmitter 414:protein kinase C 261:natural products 206:Targeted therapy 158:molecular-weight 52:organic compound 21: 1101: 1100: 1096: 1095: 1094: 1092: 1091: 1090: 1066: 1065: 1052: 1047: 1037: 1035: 1029: 1028: 1024: 980: 979: 975: 939: 938: 934: 927: 910: 909: 905: 861: 860: 856: 849: 836: 835: 831: 779: 778: 774: 764: 739: 738: 734: 711:10.1038/nrd2445 696: 695: 691: 661: 660: 656: 632:10.1.1.606.5270 625:(12): 2615–23. 616: 615: 611: 588:10.1038/nrd1343 573: 572: 568: 557: 540: 539: 532: 528: 481: 456:Small-molecule 453: 422:gene expression 403:allosteric site 336: 331: 298:Natural phenols 253: 208: 198: 166:bioavailability 154: 134:antiviral drugs 72:polysaccharides 28: 23: 22: 15: 12: 11: 5: 1099: 1097: 1089: 1088: 1083: 1081:Drug discovery 1078: 1068: 1067: 1064: 1063: 1051: 1050:External links 1048: 1046: 1045: 1022: 973: 952:(9): 599–601. 946:ACS Chem. Biol 932: 925: 903: 874:(5): 1156–65. 854: 847: 829: 792:(5): 757–758. 772: 762: 732: 705:(11): 881–90. 689: 670:(4): 337–341. 654: 609: 566: 555: 529: 527: 524: 523: 522: 517: 515:Peptidomimetic 512: 507: 502: 497: 492: 487: 480: 477: 452: 449: 363:sonic hedgehog 335: 334:Research tools 332: 330: 329: 323: 310: 305: 295: 290: 281: 276: 271: 265: 259:also known as 252: 249: 224:cell membranes 197: 194: 153: 150: 114:cell signaling 104:and act as an 102:macromolecules 40:small molecule 26: 24: 14: 13: 10: 9: 6: 4: 3: 2: 1098: 1087: 1084: 1082: 1079: 1077: 1074: 1073: 1071: 1061: 1057: 1054: 1053: 1049: 1033: 1026: 1023: 1018: 1014: 1009: 1004: 1000: 996: 992: 988: 984: 977: 974: 969: 965: 960: 955: 951: 947: 943: 936: 933: 928: 922: 917: 916: 907: 904: 899: 895: 891: 887: 882: 877: 873: 869: 865: 858: 855: 850: 844: 840: 833: 830: 825: 821: 816: 811: 807: 803: 799: 795: 791: 787: 783: 776: 773: 769: 765: 759: 755: 751: 747: 743: 736: 733: 728: 724: 720: 716: 712: 708: 704: 700: 693: 690: 685: 681: 677: 673: 669: 665: 658: 655: 650: 646: 642: 638: 633: 628: 624: 620: 613: 610: 605: 601: 597: 593: 589: 585: 582:(4): 301–17. 581: 577: 570: 567: 563: 558: 552: 548: 544: 537: 535: 531: 525: 521: 520:Macromolecule 518: 516: 513: 511: 508: 506: 505:Chemogenomics 503: 501: 498: 496: 493: 491: 488: 486: 483: 482: 478: 476: 473: 469: 465: 461: 459: 450: 448: 446: 442: 438: 434: 430: 425: 423: 419: 415: 411: 406: 404: 400: 396: 392: 388: 380: 376: 372: 368: 364: 360: 359:retinoic acid 356: 353: 349: 345: 340: 333: 327: 326:Tetrapyrroles 324: 322: 318: 314: 311: 309: 306: 303: 299: 296: 294: 291: 289: 288:actinomycin-D 285: 282: 280: 277: 275: 272: 270: 267: 266: 264: 262: 258: 250: 248: 246: 241: 237: 233: 229: 225: 221: 217: 213: 207: 203: 195: 193: 191: 187: 183: 179: 175: 171: 167: 163: 162:intracellular 159: 151: 149: 147: 143: 139: 135: 131: 127: 123: 119: 115: 111: 107: 103: 99: 95: 93: 89: 85: 81: 77: 73: 69: 65: 64:nucleic acids 61: 57: 53: 49: 45: 44:micromolecule 41: 37: 33: 19: 1038:September 6, 1036:. 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Index

Small organic compound
molecular biology
pharmacology
daltons
organic compound
drugs
Larger structures
nucleic acids
proteins
polysaccharides
amino acids
biological function
leads
therapeutic agents
protein–protein interactions
Pharmacology
macromolecules
effector
target
cell signaling
drugs
medicine
pesticides
secondary metabolites
antiviral drugs
drugs
teratogens
carcinogens
molecular-weight
intracellular

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