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Today, EPD is one of several promoter databases Among them, it is by far the oldest. It has been electronically distributed and regularly updated since 1986. As such, it had a big impact on promoter research. During the 90s, computational analysis of eukaryotic promoter sequences (in particular the
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With the rewrite and new sources demonstrating historical significance and impact, I am satisfied that this topic passes notability thresholds. The rewrite also cleaned up the article. so no reason not to keep and I have changed my recommendation above. Nice work,
352: 284:, see my comment below. The database is mentioned in several books, a sentence here, a paragraph there. The are many papers that mention the database. But I have found no in depth coverage in RS. The topic seems to fail notability thresholds per 170: 358: 342: 337: 327: 307:
Being myself the creator of EPD, I'm not going to make any recommendation as to whether or not to delete this article. I just would like to summarize a number of facts that may help to reach a decision.
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A large number of textbooks on bioinformatics and computational biology include a description of EPD, often under a corresponding subsection heading. Below are just a few examples:
96: 91: 123: 100: 83: 229: 251: 130: 185: 152: 87: 441:? If so, the page can be kept if someone fixes it by describing the database with references (above) and providing a box, just as in 317:). At least 1000 scientific papers cite EPD as a resource without which the work described in these papers could not have been done. 557: 540: 514: 491: 468: 454: 425: 402: 301: 288:. The database is verifiable in secondary sources, so the database of POL II promoters seems worth a mention in the POL II article 263: 243: 221: 65: 146: 79: 71: 17: 142: 487: 450: 192: 442: 372: 576: 553: 217: 207: 40: 483: 446: 158: 381:
EPD could indeed be mentioned in this article, preferably together with other promoter databases such as
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Other promoter resources not necessarily more notable are covered by a Knowledge article, for instance
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development of promoter prediction algorithms) was almost exclusively based on EPD (see e.g. review by
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Bioinformatics for Geneticists: A Bioinformatics Primer for the Analysis of Genetic Data page 285
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The following discussion is an archived debate of the proposed deletion of the article below.
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Subsequent comments should be made on the appropriate discussion page (such as the article's
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Subsequent comments should be made on the appropriate discussion page (such as the article's
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equence - Evolution - Function: Computational Approaches in Comparative Genomics page 101
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Systems Biology in Practice: Concepts, Implementation and Application page 414
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to generate a more thorough discussion so a clearer consensus may be reached.
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to generate a more thorough discussion so a clearer consensus may be reached.
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Database Annotation in Molecular Biology: Principles and Practice page 49
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The above discussion is preserved as an archive of the debate.
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We rewrote the article according to suggestions made here.
113: 109: 105: 177: 510:Please add new comments below this notice. Thanks, 421:Please add new comments below this notice. Thanks, 43:). No further edits should be made to this page. 579:). No further edits should be made to this page. 328:Bioinformatics Methods and Protocols page 436 230:list of Websites-related deletion discussions 191: 8: 478:Yes! This is now completely different page. 252:list of Science-related deletion discussions 250:Note: This debate has been included in the 228:Note: This debate has been included in the 379:Merging with Article on RNA polymerase II: 249: 227: 348:BIOINFORMATICS: A MODERN APPROACH page 43 353:Genome and Proteome in Oncology page 59 7: 202:Insufficient evidence of notability 24: 80:EPD Eukaryotic Promoter Database 72:EPD Eukaryotic Promoter Database 548:- Article has been corrected. 321:EPD in the textbook literature: 210:) 15:26, 22 October 2014 (UTC) 18:Knowledge:Articles for deletion 315:Fickett and Hatzigeorgiou 1997 1: 558:19:47, 14 November 2014 (UTC) 222:19:51, 14 November 2014 (UTC) 66:20:46, 14 November 2014 (UTC) 541:20:03, 7 November 2014 (UTC) 515:04:00, 7 November 2014 (UTC) 492:18:22, 7 November 2014 (UTC) 469:09:29, 5 November 2014 (UTC) 455:02:12, 2 November 2014 (UTC) 426:02:27, 30 October 2014 (UTC) 403:16:25, 28 October 2014 (UTC) 302:03:34, 28 October 2014 (UTC) 264:19:00, 25 October 2014 (UTC) 244:16:42, 22 October 2014 (UTC) 596: 310:Global impact on research: 212:Withdrawn by nominator. 568:Please do not modify it. 32:Please do not modify it. 365:Relative notability: 484:My very best wishes 447:My very best wishes 48:The result was 517: 428: 290:RNA polymerase II 277:RNA polymerase II 266: 246: 587: 570: 509: 505: 420: 416: 241: 236: 196: 195: 181: 133: 121: 103: 64: 62: 34: 595: 594: 590: 589: 588: 586: 585: 584: 583: 577:deletion review 566: 550:Robert McClenon 498: 409: 239: 234: 214:Robert McClenon 211: 204:Robert McClenon 138: 129: 94: 78: 75: 60: 57: 41:deletion review 30: 22: 21: 20: 12: 11: 5: 593: 591: 582: 581: 561: 560: 543: 520: 519: 518: 507: 506: 496: 495: 494: 473: 472: 471: 457: 431: 430: 429: 418: 417: 406: 362: 361: 355: 350: 345: 340: 335: 330: 305: 304: 268: 267: 247: 201: 199: 198: 135: 74: 69: 46: 45: 25: 23: 15: 14: 13: 10: 9: 6: 4: 3: 2: 592: 580: 578: 574: 569: 563: 562: 559: 555: 551: 547: 544: 542: 538: 534: 530: 525: 522: 521: 516: 513: 508: 504: 502: 497: 493: 489: 485: 481: 477: 476: 475: 474: 470: 466: 462: 458: 456: 452: 448: 444: 440: 439:this database 436: 433: 432: 427: 424: 419: 415: 413: 408: 407: 405: 404: 400: 396: 392: 388: 384: 380: 376: 374: 370: 366: 360: 356: 354: 351: 349: 346: 344: 341: 339: 336: 334: 331: 329: 326: 325: 324: 322: 318: 316: 311: 303: 299: 295: 291: 287: 283: 280:. Changed to 279: 278: 274: 270: 269: 265: 261: 257: 253: 248: 245: 242: 237: 231: 226: 225: 224: 223: 219: 215: 209: 205: 194: 190: 187: 184: 180: 176: 172: 169: 166: 163: 160: 157: 154: 151: 148: 144: 141: 140:Find sources: 136: 132: 128: 125: 119: 115: 111: 107: 102: 98: 93: 89: 85: 81: 77: 76: 73: 70: 68: 67: 63: 61:FreeRangeFrog 56:by nominator 55: 51: 44: 42: 38: 33: 27: 26: 19: 567: 564: 545: 523: 512:NorthAmerica 499: 479: 434: 423:NorthAmerica 410: 391:SwissRegulon 378: 377: 364: 363: 320: 319: 309: 306: 281: 272: 271: 200: 188: 182: 174: 167: 161: 155: 149: 139: 126: 54:WP:WITHDRAWN 49: 47: 31: 28: 533:Mark viking 294:Mark viking 165:free images 240:talk to me 573:talk page 256:• Gene93k 235:Jinkinson 37:talk page 575:or in a 501:Relisted 437:. Is it 412:Relisted 124:View log 39:or in a 524:Comment 443:MPromDb 435:Comment 395:E1p98d6 387:FANTOM5 373:MPromDb 171:WP refs 159:scholar 97:protect 92:history 529:Rdreos 461:Rdreos 286:WP:GNG 143:Google 101:delete 383:DBTSS 369:DBTSS 273:Merge 186:JSTOR 147:books 131:Stats 118:views 110:watch 106:links 16:< 554:talk 546:Keep 537:talk 531:! -- 488:talk 480:Keep 465:talk 451:talk 399:talk 393:. -- 389:and 371:and 298:talk 292:. -- 282:Keep 260:talk 218:talk 208:talk 179:FENS 153:news 114:logs 88:talk 84:edit 50:keep 275:to 193:TWL 122:– ( 556:) 539:) 490:) 467:) 453:) 401:) 385:, 300:) 262:) 254:. 232:. 220:) 173:) 116:| 112:| 108:| 104:| 99:| 95:| 90:| 86:| 52:. 552:( 535:( 486:( 463:( 449:( 397:( 357:S 296:( 258:( 216:( 206:( 197:) 189:· 183:· 175:· 168:· 162:· 156:· 150:· 145:( 137:( 134:) 127:· 120:) 82:( 58:§

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Knowledge:Articles for deletion
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FreeRangeFrog
20:46, 14 November 2014 (UTC)
EPD Eukaryotic Promoter Database
EPD Eukaryotic Promoter Database
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