Knowledge (XXG)

Adnaviria

Source πŸ“

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flexible virions with an envelope, and they contain an additional protein sheath layer between the nucleoprotein complex and the envelope. Rudviruses have stiff, rod-like virions about 600–900 by 23 nm. At both ends of the virion, lipothrixviruses have mop- or claw-like structures connected to a collar, whereas rudiviruses and tristromaviruses have plugs at each end from which bundles of thin filaments emanate.
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began to be discovered in the 1980s by Wolfram Zillig and his colleagues. To discover these viruses, Zillig developed the methods used to culture their hosts. The first of these to be described were TTV1, TTV2, and TTV3 in 1983. TTV1 was classified as the first lipothrixvirus but is now classified as
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infect hyperthermophilic archaea and have linear, double-stranded DNA (dsDNA) genomes ranging from about 16 to 56 kilobase pairs in length. The ends of their genomes contain inverted terminal repeats. Notably, their genomes exist in A-form, also called A-DNA. A-form is proposed to be an adaptation
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Adnaviruses have filamentous virions, i.e. they are long, thin, and cylindrical. Lipothrixviruses have flexible virions about 900 nanometers (nm) in length and 24 nm in width in which the nucleoprotein helix is surrounded by a lipid envelope. Tristromaviruses, about 400 by 32 nm, likewise have
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have potentially existed for a long time, as it is thought that they may have infected the last archaeal common ancestor. In general, they show no genetic relation to viruses outside the realm. The only genes that are shared with other viruses are
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in 2012 based on evidence of their relation. Cryogenic electron microscopy would later show in 2020 that the MCPs of tristromaviruses contained a SIRV2-like fold like ligamenviruses, providing justification for establishing
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The creation of genomic A-DNA is caused by an interaction with major capsid protein (MCP) dimers, which, during virion assembly, cover pre-genomic B-DNA to form a helical nucleoprotein complex containing genomic A-DNA.
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have potentially existed for a long time, as it is thought that they may have infected the last archaeal common ancestor. In general, they show no genetic relation to any viruses outside the realm.
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Krupovic, Mart; Kuhn, Jens H.; Wang, Fengbin; Baquero, Diana P.; Dolja, Valerian V.; Egelman, Edward H.; Prangishvili, David; Koonin, Eugene V. (2021-07-12). Sandri-Goldin, Rozanne M. (ed.).
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Janekovic D, Wunderl S, Holz I, Zillig W, Gierl A, Neumann H (1983). "TTV1, TTV2 and TTV3, a family of viruses of the extremely thermophilic, anaerobic, sulfur reducing archaebacterium
186:. Some contain an additional protein layer between the nucleoprotein helix and the envelope. Complete virions are long and thin and may be flexible or a stiff like a rod. 204:, i.e. archaea that inhabit very high temperature environments such as hot springs. Their A-DNA genome may be an adaptation to this extreme environment. Viruses in 317:
contain a folded structure consisting of a type of alpha-helix bundle that contains four helices called the SIRV2 fold, named after the virus of the same name,
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proteins. Adnaviruses are morphologically similar to non-archaeal filamentous viruses but their virions are built from different capsid proteins. Viruses of
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a tristromavirus. SIRV2, a rudivirus, became a model for studying virus-host interactions after its discovery in 1998. The families
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domain. Furthermore, Adnaviria viruses have high genome redundancy, an adaptation mechanism to survive such extreme environments.
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showed that the viruses in the realm were related due to a shared MCP, A-DNA, and general virion structure. Viruses in
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that have a filamentous virion (i.e. body) and a linear, double-stranded DNA genome. The genome exists in A-form (
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Krupovic, M; Kuhn, JH; Wang, F; Baquero, DP; Dolja, VV; Egelman, EH; Prangishvili, D; Koonin, EV (12 July 2021).
520: 321:(SIRV2). Variations in the protein structure exist, but the same base structure is retained in all adnaviruses. 1861: 746:"Adnaviria : a New Realm for Archaeal Filamentous Viruses with Linear A-Form Double-Stranded DNA Genomes" 1950: 911: 1282: 2005: 1505: 1354: 1960: 1360: 434: 343: 59: 232: 1535: 339: 250:, meaning "rod", referring to the morphology of viruses in the realm, and the virus phylum suffix - 223:-, from A-DNA, referring to the A-form genomic DNA of all viruses in the realm. The second part, - 178:
proteins to form a helical nucleoprotein complex. For some viruses, this helix is surrounded by a
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Krupovic M, Kuhn JH, Wang F, Baquero DP, Egelman EH, Koonin EV, Prangishvili D (31 July 2020).
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Prangishvili D, Arnold HP, Gotz D, Ziese U, Holz I, Kristjansson JK, Zillig W (August 1999).
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Wang F, Baquero DP, Su Z, Osinski T, Prangishvili D, Egelman EH, Krupovic M (29 April 2020).
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Lawrence CM, Menon S, Eilers BJ, Bothner B, Khayat R, Douglas T, Young MJ (8 May 2009).
863:"Structure of a filamentous virus uncovers familial ties within the archaeal virosphere" 1716: 1681: 1674: 1653: 1632: 1609: 1489: 1232: 1207: 980: 953: 887: 862: 835: 802: 778: 745: 573: 544: 512: 425: 405: 183: 163: 1994: 1955: 1915: 1883: 1776: 1744: 1730: 1709: 1695: 1646: 1639: 1558: 1431: 1039: 1166: 1116: 730: 1972: 1905: 1769: 1737: 1702: 1688: 1660: 1586: 1565: 445: 410: 352: 1223: 818: 1834: 1579: 1092: 1079: 801:
Silva, Jorge Miguel; Pratas, Diogo; Caetano, TΓ’nia; Matos, SΓ©rgio (2022-08-11).
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bundle containing four helices. The virion consists of the genome encased in
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The nucleoprotein helix is composed of asymmetric units of two MCPs. For
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allowing DNA survival under extreme conditions since their hosts are
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is the suffix used for virus realms. The sole kingdom in the realm,
1056:. International Committee on Taxonomy of Viruses (ICTV). March 2021 694:
Prangishvili D, Rensen E, Mochizuki T, Krupovic M (February 2019).
1900: 1527: 1471: 1466: 265:(αƒ—αƒαƒ™αƒ˜), meaning "thread", and the suffix used for virus classes, - 244: 179: 167: 159: 76: 313:, it is a heterodimer of paralogous MCPs. The MCPs of viruses in 1839: 1443: 1391: 1364: 1053: 375:, which has three orders. This taxonomy is shown hereafter: 1080:"40 Years of archaeal virology: Expanding viral diversity" 449:, which contains viruses that infect archaea of the order 409:, which contains viruses that infect archaea of the order 1326:. International Committee on Taxonomy of Viruses (ICTV) 1300:. International Committee on Taxonomy of Viruses (ICTV) 1262:. International Committee on Taxonomy of Viruses (ICTV) 1187:. International Committee on Taxonomy of Viruses (ICTV) 954:"Structural and functional studies of archaeal viruses" 933:. International Committee on Taxonomy of Viruses (ICTV) 670:. International Committee on Taxonomy of Viruses (ICTV) 643:. International Committee on Taxonomy of Viruses (ICTV) 616:. International Committee on Taxonomy of Viruses (ICTV) 429:, which contains viruses that infect archaea of the 1820: 1794: 1761: 1617: 1603: 1596: 1543: 1526: 1519: 1487: 1452: 1410: 1403: 689: 687: 685: 635: 633: 631: 1003:Krupovic M, Dolja VV, Koonin EV (November 2020). 371:is monotypic down to the rank of its sole class, 360:and for that reason are excluded from the realm. 1376: 662: 660: 658: 8: 1939:Reverse transcriptase-related cellular gene 1281:Prangishvili D, Krupovic M (21 June 2012). 803:"The complexity landscape of viral genomes" 538: 536: 1600: 1540: 1523: 1407: 1383: 1369: 1361: 1078:Snyder JC, Buldoc B, Young MJ (May 2015). 600: 598: 596: 594: 592: 437:, currently containing the single species 40: 29: 1231: 1091: 1073: 1071: 979: 969: 886: 834: 777: 696:"ICTV Taxonomy Profile: Tristromaviridae" 572: 319:Sulfolobus islandicus rod-shaped virus 2 1920:Retroelements not elsewhere classified 910:Prangshvili D, Krupovic M (July 2016). 532: 254:. Lastly, the sole class in the realm, 856: 854: 7: 1872:Integrative and conjugative element 305:, this is a homodimer, whereas for 140: 219:takes the first part of its name, 25: 1929:Diversity-generating retroelement 1005:"The LUCA and its complex virome" 486:were then united under the order 1934:Telomerase reverse transcriptase 1506:Microbes with highly unusual DNA 1348: 505: 63: 239:. The name of the sole phylum, 1857:Defective interfering particle 1054:"Virus Taxonomy: 2022 Release" 192:was established in 2020 after 1: 1845:Clonally transmissible cancer 194:cryogenic electron microscopy 51:Acidianus filamentous virus 3 1398:, and comparable structures 1224:10.1093/genetics/152.4.1387 1122:. Portland State University 1093:10.1016/j.virol.2015.03.031 819:10.1093/gigascience/giac079 2022: 439:Yumkaaxvirus pescaderoense 413:, containing the families 1024:10.1038/s41579-020-0408-x 521:List of higher virus taxa 200:infect hyperthermophilic 138: 133: 58: 48: 39: 32: 1862:Endogenous viral element 1320:"ICTV Taxonomy history: 1287:containing the families 1256:"ICTV Taxonomy history: 1181:"ICTV Taxonomy history: 453:, containing the family 290:microorganisms from the 1183:Betatristromavirus TTV1 607:"Create one new realm ( 971:10.1074/jbc.R800078200 916:within the new family 258:, is constructed from 344:transcription factors 342:, ribbon-helix-helix 1961:Transposable element 1951:Spiegelman's Monster 1357:at Wikimedia Commons 1117:"Wolfram ASM Letter" 1086:. 479–480: 369–378. 762:10.1128/JVI.00673-21 715:10.1099/jgv.0.001190 565:10.1128/JVI.00673-21 340:glycosyltransferases 60:Virus classification 1143:Thermoproteus tenax 964:(19): 12599–12603. 922:Alphalipothrixvirus 914:Alphatristromavirus 750:Journal of Virology 553:Journal of Virology 182:membrane called an 1830:Bio-like structure 1752:Tolecusatellitidae 1283:"Create the order 1159:10.1007/BF00327644 879:10.1093/ve/veaa023 641:"Lipothrixviridae" 495:in the same year. 243:, is derived from 1986: 1985: 1816: 1815: 1790: 1789: 1786: 1785: 1724:Portogloboviridae 1626:Alphasatellitidae 1520:Non-cellular life 1515: 1514: 1396:non-cellular life 1353:Media related to 1012:Nat Rev Microbiol 920:and remove genus 756:(15): e00673–21. 284:hyperthermophilic 231:, is named after 147: 146: 16:(Redirected from 2013: 2001:Archaeal viruses 1601: 1541: 1524: 1408: 1385: 1378: 1371: 1362: 1352: 1336: 1335: 1333: 1331: 1316: 1310: 1309: 1307: 1305: 1299: 1293:Lipothrixviridae 1278: 1272: 1271: 1269: 1267: 1252: 1246: 1245: 1235: 1218:(4): 1387–1396. 1203: 1197: 1196: 1194: 1192: 1177: 1171: 1170: 1138: 1132: 1131: 1129: 1127: 1121: 1112: 1106: 1105: 1095: 1075: 1066: 1065: 1063: 1061: 1050: 1044: 1043: 1009: 1000: 994: 993: 983: 973: 949: 943: 942: 940: 938: 932: 926:Lipothrixviridae 924:from the family 918:Tristromaviridae 907: 901: 900: 890: 858: 849: 848: 838: 798: 792: 791: 781: 741: 735: 734: 700: 691: 680: 679: 677: 675: 664: 653: 652: 650: 648: 637: 626: 625: 623: 621: 615: 602: 587: 586: 576: 559:(15): e0067321. 540: 515: 510: 509: 480:Lipothrixviridae 455:Tristromaviridae 415:Lipothrixviridae 311:tristromaviruses 307:lipothrixviruses 164:archaeal viruses 68: 67: 44: 30: 27:Realm of viruses 21: 2021: 2020: 2016: 2015: 2014: 2012: 2011: 2010: 1991: 1990: 1987: 1982: 1822: 1812: 1782: 1757: 1668:Finnlakeviridae 1613: 1592: 1534: 1530: 1511: 1483: 1448: 1399: 1389: 1345: 1340: 1339: 1329: 1327: 1318: 1317: 1313: 1303: 1301: 1297: 1280: 1279: 1275: 1265: 1263: 1254: 1253: 1249: 1205: 1204: 1200: 1190: 1188: 1179: 1178: 1174: 1140: 1139: 1135: 1125: 1123: 1119: 1114: 1113: 1109: 1077: 1076: 1069: 1059: 1057: 1052: 1051: 1047: 1018:(11): 661–670. 1007: 1002: 1001: 997: 951: 950: 946: 936: 934: 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virion 46: 45: 37: 36: 26: 24: 14: 13: 10: 9: 6: 4: 3: 2: 2018: 2007: 2004: 2002: 1999: 1998: 1996: 1989: 1979: 1976: 1974: 1971: 1967: 1964: 1963: 1962: 1959: 1957: 1956:Tandem repeat 1954: 1952: 1949: 1947: 1944: 1940: 1937: 1935: 1932: 1930: 1927: 1925: 1922: 1921: 1919: 1917: 1914: 1911: 1907: 1904: 1903: 1902: 1899: 1897: 1894: 1892: 1889: 1886: 1885: 1884:Nanobacterium 1880: 1878: 1875: 1873: 1870: 1868: 1865: 1863: 1860: 1858: 1855: 1853: 1850: 1846: 1843: 1841: 1838: 1837: 1836: 1833: 1831: 1828: 1827: 1825: 1819: 1809: 1806: 1803: 1800: 1799: 1797: 1793: 1779: 1778: 1777:Rhizidiovirus 1774: 1772: 1771: 1767: 1766: 1764: 1760: 1754: 1753: 1749: 1747: 1746: 1745:Thaspiviridae 1742: 1740: 1739: 1735: 1733: 1732: 1731:Pospiviroidae 1728: 1726: 1725: 1721: 1719: 1718: 1714: 1712: 1711: 1710:Plasmaviridae 1707: 1705: 1704: 1700: 1698: 1697: 1696:Halspiviridae 1693: 1691: 1690: 1686: 1684: 1683: 1679: 1677: 1676: 1672: 1670: 1669: 1665: 1663: 1662: 1658: 1656: 1655: 1651: 1649: 1648: 1647:Avsunviroidae 1644: 1642: 1641: 1640:Anelloviridae 1637: 1635: 1634: 1630: 1628: 1627: 1623: 1622: 1620: 1616: 1612: 1611: 1606: 1602: 1599: 1595: 1589: 1588: 1584: 1582: 1581: 1577: 1575: 1574: 1570: 1568: 1567: 1563: 1561: 1560: 1559:Duplodnaviria 1556: 1554: 1553: 1549: 1548: 1546: 1542: 1539: 1537: 1533: 1529: 1525: 1522: 1518: 1507: 1504: 1502: 1501: 1497: 1496: 1494: 1492: 1491: 1486: 1479: 1475: 1473: 1470: 1468: 1465: 1463: 1460: 1459: 1457: 1455: 1451: 1445: 1442: 1438: 1435: 1433: 1432:Mitochondrion 1430: 1429: 1428: 1425: 1423: 1420: 1419: 1417: 1414: 1409: 1406: 1404:Cellular life 1402: 1397: 1393: 1386: 1381: 1379: 1374: 1372: 1367: 1366: 1363: 1356: 1351: 1347: 1346: 1342: 1325: 1323: 1315: 1312: 1296: 1294: 1290: 1286: 1277: 1274: 1261: 1259: 1251: 1248: 1243: 1239: 1234: 1229: 1225: 1221: 1217: 1213: 1209: 1202: 1199: 1186: 1184: 1176: 1173: 1168: 1164: 1160: 1156: 1152: 1148: 1147:Mol Gen Genet 1144: 1137: 1134: 1118: 1111: 1108: 1103: 1099: 1094: 1089: 1085: 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316: 312: 308: 304: 299: 295: 293: 289: 285: 280: 272: 270: 268: 264: 261: 257: 256:Tokiviricetes 253: 249: 246: 242: 241:Taleaviricota 238: 234: 230: 226: 222: 218: 211: 209: 207: 203: 199: 195: 191: 187: 185: 181: 177: 173: 169: 165: 161: 157: 153: 152: 143: 142: 137: 132: 129: 128: 127:Tokiviricetes 124: 121: 120: 117: 116: 115:Taleaviricota 112: 109: 108: 105: 104: 100: 97: 96: 93: 92: 88: 85: 82: 81: 78: 75: 72: 71: 66: 61: 57: 53: 52: 47: 43: 38: 35: 31: 19: 2006:Virus realms 1988: 1973:Transpoviron 1906:Fungal prion 1882: 1775: 1770:Dinodnavirus 1768: 1750: 1743: 1738:Spiraviridae 1736: 1729: 1722: 1715: 1708: 1703:Ovaliviridae 1701: 1694: 1689:Guttaviridae 1687: 1680: 1673: 1666: 1661:Clavaviridae 1659: 1652: 1645: 1638: 1631: 1624: 1608: 1587:Varidnaviria 1585: 1578: 1571: 1566:Monodnaviria 1564: 1557: 1551: 1550: 1498: 1488: 1328:. 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Index

Zilligvirae

Acidianus filamentous virus 3
Virus classification
Edit this classification
Virus
Adnaviria
Zilligvirae
Taleaviricota
See text
realm
viruses
archaeal viruses
A-DNA
alpha-helix
capsid
lipid
envelope
cryogenic electron microscopy
archaea
Wolfram Zillig
Latin
Georgian
hyperthermophilic
acidophilic
archaea
rudiviruses
lipothrixviruses
tristromaviruses
Sulfolobus islandicus rod-shaped virus 2

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