42:
65:
325:
flexible virions with an envelope, and they contain an additional protein sheath layer between the nucleoprotein complex and the envelope. Rudviruses have stiff, rod-like virions about 600β900 by 23 nm. At both ends of the virion, lipothrixviruses have mop- or claw-like structures connected to a collar, whereas rudiviruses and tristromaviruses have plugs at each end from which bundles of thin filaments emanate.
1350:
507:
477:
began to be discovered in the 1980s by
Wolfram Zillig and his colleagues. To discover these viruses, Zillig developed the methods used to culture their hosts. The first of these to be described were TTV1, TTV2, and TTV3 in 1983. TTV1 was classified as the first lipothrixvirus but is now classified as
281:
infect hyperthermophilic archaea and have linear, double-stranded DNA (dsDNA) genomes ranging from about 16 to 56 kilobase pairs in length. The ends of their genomes contain inverted terminal repeats. Notably, their genomes exist in A-form, also called A-DNA. A-form is proposed to be an adaptation
324:
Adnaviruses have filamentous virions, i.e. they are long, thin, and cylindrical. Lipothrixviruses have flexible virions about 900 nanometers (nm) in length and 24 nm in width in which the nucleoprotein helix is surrounded by a lipid envelope. Tristromaviruses, about 400 by 32 nm, likewise have
337:
have potentially existed for a long time, as it is thought that they may have infected the last archaeal common ancestor. In general, they show no genetic relation to viruses outside the realm. The only genes that are shared with other viruses are
1382:
490:
in 2012 based on evidence of their relation. Cryogenic electron microscopy would later show in 2020 that the MCPs of tristromaviruses contained a SIRV2-like fold like ligamenviruses, providing justification for establishing
297:
The creation of genomic A-DNA is caused by an interaction with major capsid protein (MCP) dimers, which, during virion assembly, cover pre-genomic B-DNA to form a helical nucleoprotein complex containing genomic A-DNA.
1375:
208:
have potentially existed for a long time, as it is thought that they may have infected the last archaeal common ancestor. In general, they show no genetic relation to any viruses outside the realm.
1368:
744:
Krupovic, Mart; Kuhn, Jens H.; Wang, Fengbin; Baquero, Diana P.; Dolja, Valerian V.; Egelman, Edward H.; Prangishvili, David; Koonin, Eugene V. (2021-07-12). Sandri-Goldin, Rozanne M. (ed.).
1141:
Janekovic D, Wunderl S, Holz I, Zillig W, Gierl A, Neumann H (1983). "TTV1, TTV2 and TTV3, a family of viruses of the extremely thermophilic, anaerobic, sulfur reducing archaebacterium
186:. Some contain an additional protein layer between the nucleoprotein helix and the envelope. Complete virions are long and thin and may be flexible or a stiff like a rod.
204:, i.e. archaea that inhabit very high temperature environments such as hot springs. Their A-DNA genome may be an adaptation to this extreme environment. Viruses in
317:
contain a folded structure consisting of a type of alpha-helix bundle that contains four helices called the SIRV2 fold, named after the virus of the same name,
350:
proteins. Adnaviruses are morphologically similar to non-archaeal filamentous viruses but their virions are built from different capsid proteins. Viruses of
1938:
356:, a family of filamentous archaeal viruses morphologically similar to adnaviruses, likewise possess MCPs that show no relation to the MCPs of viruses in
318:
640:
1004:
667:
1208:"A novel virus family, the Rudiviridae: Structure, virus-host interactions and genome variability of the sulfolobus viruses SIRV1 and SIRV2"
1871:
1928:
478:
a tristromavirus. SIRV2, a rudivirus, became a model for studying virus-host interactions after its discovery in 1998. The families
294:
domain. Furthermore, Adnaviria viruses have high genome redundancy, an adaptation mechanism to survive such extreme environments.
41:
1933:
1856:
1844:
193:
50:
64:
196:
showed that the viruses in the realm were related due to a shared MCP, A-DNA, and general virion structure. Viruses in
695:
166:
that have a filamentous virion (i.e. body) and a linear, double-stranded DNA genome. The genome exists in A-form (
2000:
543:
Krupovic, M; Kuhn, JH; Wang, F; Baquero, DP; Dolja, VV; Egelman, EH; Prangishvili, D; Koonin, EV (12 July 2021).
520:
321:(SIRV2). Variations in the protein structure exist, but the same base structure is retained in all adnaviruses.
1861:
746:"Adnaviria : a New Realm for Archaeal Filamentous Viruses with Linear A-Form Double-Stranded DNA Genomes"
1950:
911:
1282:
2005:
1505:
1354:
1960:
1360:
434:
343:
59:
232:
1535:
339:
250:, meaning "rod", referring to the morphology of viruses in the realm, and the virus phylum suffix -
223:-, from A-DNA, referring to the A-form genomic DNA of all viruses in the realm. The second part, -
178:
proteins to form a helical nucleoprotein complex. For some viruses, this helix is surrounded by a
1829:
1751:
1319:
1255:
1180:
1162:
1035:
726:
606:
605:
Krupovic M, Kuhn JH, Wang F, Baquero DP, Egelman EH, Koonin EV, Prangishvili D (31 July 2020).
1807:
1723:
1625:
1395:
1237:
1097:
1027:
985:
892:
840:
822:
783:
765:
718:
578:
549:: a new realm for archaeal filamentous viruses with linear A-form double-stranded DNA genomes"
259:
1206:
Prangishvili D, Arnold HP, Gotz D, Ziese U, Holz I, Kristjansson JK, Zillig W (August 1999).
861:
Wang F, Baquero DP, Su Z, Osinski T, Prangishvili D, Egelman EH, Krupovic M (29 April 2020).
1227:
1219:
1154:
1087:
1019:
975:
965:
882:
874:
830:
814:
773:
757:
710:
568:
560:
310:
306:
283:
155:
170:) and encodes a dimeric major capsid protein (MCP) that contains the SIRV2 fold, a type of
1667:
450:
235:(1925β2005) for his research on hyperthermophilic archaea, with the virus kingdom suffix -
952:
Lawrence CM, Menon S, Eilers BJ, Bothner B, Khayat R, Douglas T, Young MJ (8 May 2009).
863:"Structure of a filamentous virus uncovers familial ties within the archaeal virosphere"
1716:
1681:
1674:
1653:
1632:
1609:
1489:
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1207:
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887:
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183:
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1994:
1955:
1915:
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1639:
1558:
1431:
1039:
1166:
1116:
730:
1972:
1905:
1769:
1737:
1702:
1688:
1660:
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1565:
445:
410:
352:
1223:
818:
1834:
1579:
1092:
1079:
801:
Silva, Jorge Miguel; Pratas, Diogo; Caetano, TΓ’nia; Matos, SΓ©rgio (2022-08-11).
302:
171:
611:) for classification of filamentous archaeal viruses with linear dsDNA genomes"
1965:
1912:
1499:
1412:
1023:
502:
287:
826:
769:
174:
bundle containing four helices. The virion consists of the genome encased in
1572:
1453:
1241:
1101:
1031:
989:
970:
896:
844:
787:
722:
582:
17:
1349:
1945:
1890:
1477:
1461:
1426:
878:
761:
714:
564:
301:
The nucleoprotein helix is composed of asymmetric units of two MCPs. For
1977:
1895:
1876:
1436:
1421:
1158:
291:
201:
506:
1923:
1866:
1851:
1801:
1531:
347:
282:
allowing DNA survival under extreme conditions since their hosts are
175:
227:
is the suffix used for virus realms. The sole kingdom in the realm,
1056:. International Committee on Taxonomy of Viruses (ICTV). March 2021
694:
Prangishvili D, Rensen E, Mochizuki T, Krupovic M (February 2019).
1900:
1527:
1471:
1466:
265:(αααα), meaning "thread", and the suffix used for virus classes, -
244:
179:
167:
159:
76:
313:, it is a heterodimer of paralogous MCPs. The MCPs of viruses in
1839:
1443:
1391:
1364:
1053:
375:, which has three orders. This taxonomy is shown hereafter:
1080:"40 Years of archaeal virology: Expanding viral diversity"
449:, which contains viruses that infect archaea of the order
409:, which contains viruses that infect archaea of the order
1326:. International Committee on Taxonomy of Viruses (ICTV)
1300:. International Committee on Taxonomy of Viruses (ICTV)
1262:. International Committee on Taxonomy of Viruses (ICTV)
1187:. International Committee on Taxonomy of Viruses (ICTV)
954:"Structural and functional studies of archaeal viruses"
933:. International Committee on Taxonomy of Viruses (ICTV)
670:. International Committee on Taxonomy of Viruses (ICTV)
643:. International Committee on Taxonomy of Viruses (ICTV)
616:. International Committee on Taxonomy of Viruses (ICTV)
429:, which contains viruses that infect archaea of the
1820:
1794:
1761:
1617:
1603:
1596:
1543:
1526:
1519:
1487:
1452:
1410:
1403:
689:
687:
685:
635:
633:
631:
1003:Krupovic M, Dolja VV, Koonin EV (November 2020).
371:is monotypic down to the rank of its sole class,
360:and for that reason are excluded from the realm.
1376:
662:
660:
658:
8:
1939:Reverse transcriptase-related cellular gene
1281:Prangishvili D, Krupovic M (21 June 2012).
803:"The complexity landscape of viral genomes"
538:
536:
1600:
1540:
1523:
1407:
1383:
1369:
1361:
1078:Snyder JC, Buldoc B, Young MJ (May 2015).
600:
598:
596:
594:
592:
437:, currently containing the single species
40:
29:
1231:
1091:
1073:
1071:
979:
969:
886:
834:
777:
696:"ICTV Taxonomy Profile: Tristromaviridae"
572:
319:Sulfolobus islandicus rod-shaped virus 2
1920:Retroelements not elsewhere classified
910:Prangshvili D, Krupovic M (July 2016).
532:
254:. Lastly, the sole class in the realm,
856:
854:
7:
1872:Integrative and conjugative element
305:, this is a homodimer, whereas for
140:
219:takes the first part of its name,
25:
1929:Diversity-generating retroelement
1005:"The LUCA and its complex virome"
486:were then united under the order
1934:Telomerase reverse transcriptase
1506:Microbes with highly unusual DNA
1348:
505:
63:
239:. The name of the sole phylum,
1857:Defective interfering particle
1054:"Virus Taxonomy: 2022 Release"
192:was established in 2020 after
1:
1845:Clonally transmissible cancer
194:cryogenic electron microscopy
51:Acidianus filamentous virus 3
1398:, and comparable structures
1224:10.1093/genetics/152.4.1387
1122:. Portland State University
1093:10.1016/j.virol.2015.03.031
819:10.1093/gigascience/giac079
2022:
439:Yumkaaxvirus pescaderoense
413:, containing the families
1024:10.1038/s41579-020-0408-x
521:List of higher virus taxa
200:infect hyperthermophilic
138:
133:
58:
48:
39:
32:
1862:Endogenous viral element
1320:"ICTV Taxonomy history:
1287:containing the families
1256:"ICTV Taxonomy history:
1181:"ICTV Taxonomy history:
453:, containing the family
290:microorganisms from the
1183:Betatristromavirus TTV1
607:"Create one new realm (
971:10.1074/jbc.R800078200
916:within the new family
258:, is constructed from
344:transcription factors
342:, ribbon-helix-helix
1961:Transposable element
1951:Spiegelman's Monster
1357:at Wikimedia Commons
1117:"Wolfram ASM Letter"
1086:. 479β480: 369β378.
762:10.1128/JVI.00673-21
715:10.1099/jgv.0.001190
565:10.1128/JVI.00673-21
340:glycosyltransferases
60:Virus classification
1143:Thermoproteus tenax
964:(19): 12599β12603.
922:Alphalipothrixvirus
914:Alphatristromavirus
750:Journal of Virology
553:Journal of Virology
182:membrane called an
1830:Bio-like structure
1752:Tolecusatellitidae
1283:"Create the order
1159:10.1007/BF00327644
879:10.1093/ve/veaa023
641:"Lipothrixviridae"
495:in the same year.
243:, is derived from
1986:
1985:
1816:
1815:
1790:
1789:
1786:
1785:
1724:Portogloboviridae
1626:Alphasatellitidae
1520:Non-cellular life
1515:
1514:
1396:non-cellular life
1353:Media related to
1012:Nat Rev Microbiol
920:and remove genus
756:(15): e00673β21.
284:hyperthermophilic
231:, is named after
147:
146:
16:(Redirected from
2013:
2001:Archaeal viruses
1601:
1541:
1524:
1408:
1385:
1378:
1371:
1362:
1352:
1336:
1335:
1333:
1331:
1316:
1310:
1309:
1307:
1305:
1299:
1293:Lipothrixviridae
1278:
1272:
1271:
1269:
1267:
1252:
1246:
1245:
1235:
1218:(4): 1387β1396.
1203:
1197:
1196:
1194:
1192:
1177:
1171:
1170:
1138:
1132:
1131:
1129:
1127:
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1065:
1063:
1061:
1050:
1044:
1043:
1009:
1000:
994:
993:
983:
973:
949:
943:
942:
940:
938:
932:
926:Lipothrixviridae
924:from the family
918:Tristromaviridae
907:
901:
900:
890:
858:
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623:
621:
615:
602:
587:
586:
576:
559:(15): e0067321.
540:
515:
510:
509:
480:Lipothrixviridae
455:Tristromaviridae
415:Lipothrixviridae
311:tristromaviruses
307:lipothrixviruses
164:archaeal viruses
68:
67:
44:
30:
27:Realm of viruses
21:
2021:
2020:
2016:
2015:
2014:
2012:
2011:
2010:
1991:
1990:
1987:
1982:
1822:
1812:
1782:
1757:
1668:Finnlakeviridae
1613:
1592:
1534:
1530:
1511:
1483:
1448:
1399:
1389:
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1114:
1113:
1109:
1077:
1076:
1069:
1059:
1057:
1052:
1051:
1047:
1018:(11): 661β670.
1007:
1002:
1001:
997:
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451:Thermoproteales
435:Menathophagales
366:
331:
275:
273:Characteristics
214:
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28:
23:
22:
15:
12:
11:
5:
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1727:
1720:
1717:Polydnaviridae
1713:
1706:
1699:
1692:
1685:
1682:Globuloviridae
1678:
1675:Fuselloviridae
1671:
1664:
1657:
1654:Bicaudaviridae
1650:
1643:
1636:
1633:Ampullaviridae
1629:
1621:
1619:
1615:
1614:
1610:Naldaviricetes
1607:
1605:
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1490:Incertae sedis
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1365:
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1358:
1344:
1343:External links
1341:
1338:
1337:
1311:
1285:Ligamenvirales
1273:
1258:Ligamenvirales
1247:
1198:
1172:
1153:(1β2): 39β45.
1133:
1107:
1067:
1045:
995:
944:
912:"Create genus
902:
873:(1): veaa023.
850:
793:
736:
709:(2): 135β136.
681:
654:
627:
588:
531:
530:
528:
525:
524:
523:
517:
516:
513:Viruses portal
500:
497:
488:Ligamenvirales
470:
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426:Maximonvirales
421:
406:Ligamenvirales
365:
364:Classification
362:
330:
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233:Wolfram Zillig
213:
210:
162:that includes
145:
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111:
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54:(AFV3) virion
46:
45:
37:
36:
26:
24:
14:
13:
10:
9:
6:
4:
3:
2:
2018:
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1979:
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1956:Tandem repeat
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1884:Nanobacterium
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1777:Rhizidiovirus
1774:
1772:
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1754:
1753:
1749:
1747:
1746:
1745:Thaspiviridae
1742:
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1739:
1735:
1733:
1732:
1731:Pospiviroidae
1728:
1726:
1725:
1721:
1719:
1718:
1714:
1712:
1711:
1710:Plasmaviridae
1707:
1705:
1704:
1700:
1698:
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1696:Halspiviridae
1693:
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1658:
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1647:Avsunviroidae
1644:
1642:
1641:
1640:Anelloviridae
1637:
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1577:
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1574:
1570:
1568:
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1560:
1559:Duplodnaviria
1556:
1554:
1553:
1549:
1548:
1546:
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1507:
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1501:
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1442:
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1435:
1433:
1432:Mitochondrion
1430:
1429:
1428:
1425:
1423:
1420:
1419:
1417:
1414:
1409:
1406:
1404:Cellular life
1402:
1397:
1393:
1386:
1381:
1379:
1374:
1372:
1367:
1366:
1363:
1356:
1351:
1347:
1346:
1342:
1325:
1323:
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2006:Virus realms
1988:
1973:Transpoviron
1906:Fungal prion
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1770:Dinodnavirus
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1738:Spiraviridae
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1703:Ovaliviridae
1701:
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1689:Guttaviridae
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1661:Clavaviridae
1659:
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1608:
1587:Varidnaviria
1585:
1578:
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1566:Monodnaviria
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1916:microsphere
1835:Cancer cell
1580:Ribozyviria
1289:Rudiviridae
1115:Stedman K.
958:J Biol Chem
813:: giac079.
807:GigaScience
703:J Gen Virol
484:Rudiviridae
473:Viruses of
419:Rudiviridae
387:Zilligvirae
346:, and anti-
333:Viruses in
303:rudiviruses
288:acidophilic
277:Viruses in
229:Zilligvirae
172:alpha-helix
103:Zilligvirae
18:Zilligvirae
1995:Categories
1966:Retroposon
1913:Proteinoid
1823:structures
1821:Comparable
1597:Unassigned
1500:Parakaryon
1413:Prokaryota
867:Virus Evol
527:References
431:Candidatus
1573:Riboviria
1552:Adnaviria
1536:Satellite
1454:Eukaryota
1355:Adnaviria
1322:Adnaviria
1040:220516514
827:2047-217X
770:0022-538X
609:Adnaviria
547:Adnaviria
493:Adnaviria
475:Adnaviria
385:Kingdom:
381:Adnaviria
369:Adnaviria
358:Adnaviria
335:Adnaviria
315:Adnaviria
279:Adnaviria
267:viricetes
217:Adnaviria
212:Etymology
206:Adnaviria
198:Adnaviria
190:Adnaviria
151:Adnaviria
98:Kingdom:
91:Adnaviria
34:Adnaviria
1946:Ribozyme
1891:Phagemid
1618:Families
1478:Protista
1462:Animalia
1427:Bacteria
1242:10430569
1212:Genetics
1167:46094905
1102:25866378
1084:Virology
1032:32665595
990:19158076
897:32368353
845:35950839
788:34011550
731:54475961
723:30540248
583:34011550
499:See also
391:Phylum:
260:Georgian
252:viricota
184:envelope
141:See text
134:Subtaxa
110:Phylum:
1978:Xenobot
1896:Plasmid
1877:Jeewanu
1808:Obelisk
1604:Classes
1472:Plantae
1437:Plastid
1422:Archaea
1330:20 July
1304:20 July
1266:20 July
1233:1460677
1191:20 July
1126:20 July
1060:20 July
981:2675988
937:20 July
888:7189273
836:9366995
779:8274609
674:20 July
647:20 July
620:20 July
574:8274609
469:History
443:Order:
423:Order:
403:Order:
397:Class:
379:Realm:
292:archaea
202:archaea
160:viruses
122:Class:
1924:Retron
1867:Fosmid
1852:Cosmid
1802:Nanobe
1762:Genera
1544:Realms
1532:Viroid
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614:(docx)
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433:order
348:CRISPR
176:capsid
1901:Prion
1795:Other
1528:Virus
1467:Fungi
1298:(PDF)
1163:S2CID
1120:(PDF)
1036:S2CID
1008:(PDF)
931:(PDF)
727:S2CID
699:(PDF)
248:talea
245:Latin
237:virae
225:viria
180:lipid
168:A-DNA
156:realm
154:is a
84:Realm
77:Virus
1840:HeLa
1444:LUCA
1392:Life
1332:2021
1306:2021
1291:and
1268:2021
1238:PMID
1193:2021
1128:2021
1098:PMID
1062:2021
1028:PMID
986:PMID
939:2021
893:PMID
841:PMID
823:ISSN
784:PMID
766:ISSN
719:PMID
676:2021
649:2021
622:2021
579:PMID
482:and
417:and
309:and
286:and
263:toki
221:Adna
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1220:doi
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561:doi
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