Knowledge (XXG)

DrugBank

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281:(absorption, distribution, metabolism, excretion and toxicity) parameters. Version 3.0 was released in 2011. This version contained 1424 approved small molecule drugs and 132 biotech drugs as well as >4000 unique drug targets. Version 3.0 also included drug transporter data, drug pathway data, drug pricing, patent and manufacturing data as well as data on >5000 experimental drugs. Version 4.0 was released in 2014. This version included 1558 FDA-approved small molecule drugs, 155 biotech drugs and 4200 unique drug targets. Version 4.0 also incorporated extensive information on drug metabolites (structures and reactions), drug taxonomy, drug spectra, drug 38: 1417:
Wishart, DS; Guo, AC; Eisner, R; Young, N; Gautam, B; Hau, DD; Psychogios, N; Dong, E; Bouatra, S; Mandal, R; Sinelnikov, I; Xia, J; Jia, L; Cruz, JA; Lim, E; Sobsey, CA; Shrivastava, S; Huang, P; Liu, P; Fang, L; Peng, J; Fradette, R; Cheng, D; Tzur, D; Clements, M; Lewis, A; De Souza, A; Zuniga, A;
197:
The DrugBank Online website is available to the public as a free-to-access resource. However, use and re-distribution of content from DrugBank Online or the underlying DrugBank Data, in whole or part, and for any purpose requires a license. Academic users can apply for a free license for certain use
268:
The first version of DrugBank was released in 2006. This early release contained relatively modest information about 841 FDA-approved small molecule drugs and 113 biotech drugs. It also included information on 2133 drug targets. The second version of DrugBank was released in 2009. This greatly
63:
Chemical structures, small molecule drugs, biotech drugs, drug targets, drug transporters, drug target sequences, drug target SNPs, drug metabolites, drug descriptions, disease associations, dosage data, food and drug interactions, adverse drug reactions, pharmacology, mechanisms of action, drug
229:/transporter/carrier) sequences are linked to these drug entries. Each DrugCard entry (Fig. 1) contains more than 200 data fields with half of the information being devoted to drug/chemical data and the other half devoted to drug target or protein data. 1154:
All data in DrugBank is derived from public non-proprietary sources. Nearly every data item is fully traceable and explicitly referenced to the original source. DrugBank data is available through a public web interface.
185:
resource, DrugBank combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. DrugBank has used content from
1368:
Law, V; Knox, C; Djoumbou, Y; Jewison, T; Guo, AC; Liu, Y; Maciejewski, A; Arndt, D; Wilson, M; Neveu, V; Tang, A; Gabriel, G; Ly, C; Adamjee, S; Dame, ZT; Han, B; Zhou, Y; Wishart, DS (Jan 2014).
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expanded and improved version of the database included 1344 approved small molecule drugs and 123 biotech drugs as well as 3037 unique drug targets. Version 2.0 also included, for the first time,
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metabolism, chemical synthesis, patent and pricing data, chemical properties, nomenclature, synonyms, chemical taxonomy, drug NMR spectra, drug GC-MS spectra, drug LC-MS spectra
1565:
Knox, C; Law, V; Jewison, T; Liu, P; Ly, S; Frolkis, A; Pon, A; Banco, K; Mak, C; Neveu, V; Djoumbou, Y; Eisner, R; Guo, AC; Wishart, DS. (Jan 2011).
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and drug synthesis information. Table 1 provides a more complete statistical summary of the history of DrugBank's development.
244:
databases. HMDB contains equivalent information on more than 40,000 human metabolites, T3DB contains information on 3100 common
1678: 1673: 1338: 1683: 1204: 1184: 1668: 1418:
Dawe, M; Xiong, Y; Clive, D; Greiner, R; Nazyrova, A; Shaykhutdinov, R; Li, L; Vogel, HJ; Forsythe, I (Jan 2009).
1174: 174: 256:
and disease pathways, while FooDB contains equivalent information on ~28,000 food components and
253: 191: 1615: 1339:"The Dizzying Problem of Citationless Knowledge (XXG) "Facts" That Take On a Life of Their Own" 1645: 1596: 1547: 1498: 1449: 1399: 1316: 1264: 222: 1635: 1627: 1586: 1578: 1537: 1529: 1488: 1480: 1439: 1431: 1389: 1381: 1306: 1298: 1254: 1246: 1230: 282: 87: 1467:
Lim, E; Pon A; Djoumbou Y; Knox C; Shrivastava S; Guo AC; Neveu V; Wishart DS. (Jan 2010).
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The latest release of the database (version 5.0) contains 9591 drug entries including 2037
1169: 182: 169:
database is a comprehensive, freely accessible, online database containing information on
74: 1640: 1591: 1566: 1542: 1517: 1493: 1468: 1444: 1419: 1394: 1369: 1311: 1286: 1259: 1234: 270: 257: 241: 218: 206: 1662: 289:
Table 1. Comparison between the coverage in DrugBank 1.0, 2.0, 3.0 and DrugBank 4.0.
274: 1189: 187: 1616:"DrugBank: a comprehensive resource for in silico drug discovery and exploration" 1235:"DrugBank: a comprehensive resource for in silico drug discovery and exploration" 237: 97:
DrugBank: a comprehensive resource for in silico drug discovery and exploration.
1469:"T3DB: a comprehensively annotated database of common toxins and their targets" 249: 79:
University of Alberta and The Metabolomics Innovation Centre, Alberta, Canada
1649: 1600: 1551: 1502: 1453: 1403: 1320: 1268: 37: 1582: 1533: 1385: 1631: 1484: 1435: 1302: 1250: 17: 214: 210: 178: 1567:"DrugBank 3.0: a comprehensive resource for 'omics' research on drugs" 1164: 245: 226: 1287:"DrugBank: a knowledgebase for drugs, drug actions and drug targets" 127: 1194: 233: 190:; Knowledge (XXG) also often links to Drugbank, posing potential 1199: 1179: 278: 170: 27:
Online database containing information on drugs and drug targets
202: 225:. Additionally, 4270 non-redundant protein (i.e. drug target/ 277:, extensive food-drug and drug-drug interactions as well as 111: 252:, SMPDB contains pathway diagrams for nearly 700 human 1516:
Jewison, T; Su Y; Disfany FM; et al. (Jan 2014).
987:
Total No. of experimental and FDA small molecule drugs
528:
No. of drugs with taxonomic classification information
1370:"DrugBank 5.0: shedding new light on drug metabolism" 1285:
Wishart, DS; Knox C; Guo AC; et al. (Jan 2008).
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cases while all other users require a paid license.
1014:
Total No. of experimental and FDA drugs (all types)
717:
No. of drugs with drug-target binding constant data
155: 145: 140: 122: 106: 101: 93: 83: 73: 68: 57: 49: 44: 582:No. of drugs with patent/pricing/manufacturer data 177:and The Metabolomics Innovation Centre located in 151:Every 2 years with monthly corrections and updates 232:Four additional databases, HMDB, T3DB, SMPDB and 1420:"HMDB: a knowledgebase for the human metabolome" 798:No. of drugs with chemical synthesis information 173:and drug targets created and maintained by the 1363: 1361: 1359: 1280: 1278: 1225: 1223: 1221: 1219: 1068:No. of approved-drug enzymes/carriers (unique) 1332: 1330: 8: 30: 474:No. of illustrated drug metabolism pathways 393:No. of drugs with metabolizing enzyme data 1233:; Knox C; Guo AC; et al. (Jan 2006). 36: 29: 1639: 1590: 1541: 1492: 1443: 1393: 1310: 1258: 1095:No. of all drug enzymes/carriers (unique) 181:, Canada. As both a bioinformatics and a 825:No. of FDA-approved small molecule drugs 366:No. of illustrated drug-action pathways 287: 1215: 501:No. of drugs with drug transporter data 420:No. of drug metabolites with structures 663:No. of ADMET parameters (Caco-2, LogS) 7: 236:are also part of a general suite of 1337:Harrison, Stephen (7 March 2019). 555:No. of SNP-associated drug effects 25: 1518:"Small Molecule Pathway Database" 209:drugs, 241 FDA-approved biotech ( 1041:No. of all drug targets (unique) 447:No. of drug-metabolism reactions 690:No. of QSAR parameters per drug 312:No. of data fields per DrugCard 1122:No. of external database links 1: 744:No. of drugs with NMR spectra 636:No. of drug–drug interactions 609:No. of food–drug interactions 1577:(Database issue): D1035-41. 1205:Therapeutic Targets Database 1185:List of biological databases 771:No. of drugs with MS spectra 1528:(Database issue): D478-84. 1430:(Database issue): D603-10. 1380:(Database issue): D1091-7. 1245:(Database issue): D668-72. 1140: 1135: 1130: 1125: 1113: 1108: 1103: 1098: 1086: 1081: 1076: 1071: 1059: 1054: 1049: 1044: 1032: 1027: 1022: 1017: 1005: 1000: 995: 990: 978: 973: 968: 963: 951: 946: 941: 936: 924: 919: 914: 909: 897: 892: 887: 882: 870: 865: 860: 855: 843: 838: 833: 828: 816: 811: 806: 801: 789: 784: 779: 774: 762: 757: 752: 747: 735: 730: 725: 720: 708: 703: 698: 693: 681: 676: 671: 666: 654: 649: 644: 639: 627: 622: 617: 612: 600: 595: 590: 585: 573: 568: 563: 558: 546: 541: 536: 531: 519: 514: 509: 504: 492: 487: 482: 477: 465: 460: 455: 450: 438: 433: 428: 423: 411: 406: 401: 396: 384: 379: 374: 369: 357: 352: 347: 342: 330: 325: 320: 315: 1700: 1614:Wishart, David S. (2006). 1479:(Database issue): D781-6. 1297:(Database issue): D901-6. 879:No. of nutraceutical drugs 960:No. of experimental drugs 35: 1679:Human drug metabolites 1620:Nucleic Acids Research 1571:Nucleic Acids Research 1522:Nucleic Acids Research 1473:Nucleic Acids Research 1424:Nucleic Acids Research 1374:Nucleic Acids Research 1291:Nucleic Acids Research 1239:Nucleic Acids Research 906:No. of withdrawn drugs 1674:Metabolomic databases 175:University of Alberta 1684:Biological databases 1626:(suppl_1): 668–672. 933:No. of illicit drugs 852:No. of biotech drugs 1583:10.1093/nar/gkq1126 1534:10.1093/nar/gkt1067 1386:10.1093/nar/gkt1068 339:No. of search types 290: 32: 1669:Chemical databases 1632:10.1093/nar/gkj067 1485:10.1093/nar/gkp934 1436:10.1093/nar/gkn810 1303:10.1093/nar/gkm958 1251:10.1093/nar/gkj067 288: 254:metabolic pathways 248:and environmental 223:experimental drugs 192:circular reporting 1147: 1146: 283:binding constants 163: 162: 16:(Redirected from 1691: 1654: 1653: 1643: 1611: 1605: 1604: 1594: 1562: 1556: 1555: 1545: 1513: 1507: 1506: 1496: 1464: 1458: 1457: 1447: 1414: 1408: 1407: 1397: 1365: 1354: 1353: 1351: 1349: 1334: 1325: 1324: 1314: 1282: 1273: 1272: 1262: 1227: 1150:Scope and access 1143: 1138: 1133: 1128: 1116: 1111: 1106: 1101: 1089: 1084: 1079: 1074: 1062: 1057: 1052: 1047: 1035: 1030: 1025: 1020: 1008: 1003: 998: 993: 981: 976: 971: 966: 954: 949: 944: 939: 927: 922: 917: 912: 900: 895: 890: 885: 873: 868: 863: 858: 846: 841: 836: 831: 819: 814: 809: 804: 792: 787: 782: 777: 765: 760: 755: 750: 738: 733: 728: 723: 711: 706: 701: 696: 684: 679: 674: 669: 657: 652: 647: 642: 630: 625: 620: 615: 603: 598: 593: 588: 576: 571: 566: 561: 549: 544: 539: 534: 522: 517: 512: 507: 495: 490: 485: 480: 468: 463: 458: 453: 441: 436: 431: 426: 414: 409: 404: 399: 387: 382: 377: 372: 360: 355: 350: 345: 333: 328: 323: 318: 291: 159:Manually curated 136: 133: 131: 129: 118: 115: 113: 94:Primary citation 88:David S. Wishart 40: 33: 21: 1699: 1698: 1694: 1693: 1692: 1690: 1689: 1688: 1659: 1658: 1657: 1613: 1612: 1608: 1564: 1563: 1559: 1515: 1514: 1510: 1466: 1465: 1461: 1416: 1415: 1411: 1367: 1366: 1357: 1347: 1345: 1336: 1335: 1328: 1284: 1283: 1276: 1229: 1228: 1217: 1213: 1170:Drug metabolism 1161: 1152: 1141: 1136: 1131: 1126: 1114: 1109: 1104: 1099: 1087: 1082: 1077: 1072: 1060: 1055: 1050: 1045: 1033: 1028: 1023: 1018: 1006: 1001: 996: 991: 979: 974: 969: 964: 952: 947: 942: 937: 925: 920: 915: 910: 898: 893: 888: 883: 871: 866: 861: 856: 844: 839: 834: 829: 817: 812: 807: 802: 790: 785: 780: 775: 763: 758: 753: 748: 736: 731: 726: 721: 709: 704: 699: 694: 682: 677: 672: 667: 655: 650: 645: 640: 628: 623: 618: 613: 601: 596: 591: 586: 574: 569: 564: 559: 547: 542: 537: 532: 520: 515: 510: 505: 493: 488: 483: 478: 466: 461: 456: 451: 439: 434: 429: 424: 412: 407: 402: 397: 385: 380: 375: 370: 358: 353: 348: 343: 331: 326: 321: 316: 271:withdrawn drugs 266: 264:Version history 188:Knowledge (XXG) 183:cheminformatics 156:Curation policy 147: 126: 110: 75:Research center 59: 28: 23: 22: 15: 12: 11: 5: 1697: 1695: 1687: 1686: 1681: 1676: 1671: 1661: 1660: 1656: 1655: 1606: 1557: 1508: 1459: 1409: 1355: 1343:Slate Magazine 1326: 1274: 1214: 1212: 1209: 1208: 1207: 1202: 1197: 1192: 1187: 1182: 1177: 1172: 1167: 1160: 1157: 1151: 1148: 1145: 1144: 1139: 1134: 1129: 1124: 1118: 1117: 1112: 1107: 1102: 1097: 1091: 1090: 1085: 1080: 1075: 1070: 1064: 1063: 1058: 1053: 1048: 1043: 1037: 1036: 1031: 1026: 1021: 1016: 1010: 1009: 1004: 999: 994: 989: 983: 982: 977: 972: 967: 962: 956: 955: 950: 945: 940: 935: 929: 928: 923: 918: 913: 908: 902: 901: 896: 891: 886: 881: 875: 874: 869: 864: 859: 854: 848: 847: 842: 837: 832: 827: 821: 820: 815: 810: 805: 800: 794: 793: 788: 783: 778: 773: 767: 766: 761: 756: 751: 746: 740: 739: 734: 729: 724: 719: 713: 712: 707: 702: 697: 692: 686: 685: 680: 675: 670: 665: 659: 658: 653: 648: 643: 638: 632: 631: 626: 621: 616: 611: 605: 604: 599: 594: 589: 584: 578: 577: 572: 567: 562: 557: 551: 550: 545: 540: 535: 530: 524: 523: 518: 513: 508: 503: 497: 496: 491: 486: 481: 476: 470: 469: 464: 459: 454: 449: 443: 442: 437: 432: 427: 422: 416: 415: 410: 405: 400: 395: 389: 388: 383: 378: 373: 368: 362: 361: 356: 351: 346: 341: 335: 334: 329: 324: 319: 314: 308: 307: 304: 301: 298: 295: 265: 262: 258:food additives 242:cheminformatic 221:and over 6000 219:nutraceuticals 207:small molecule 161: 160: 157: 153: 152: 149: 143: 142: 138: 137: 124: 120: 119: 108: 104: 103: 99: 98: 95: 91: 90: 85: 81: 80: 77: 71: 70: 66: 65: 61: 55: 54: 51: 47: 46: 42: 41: 26: 24: 14: 13: 10: 9: 6: 4: 3: 2: 1696: 1685: 1682: 1680: 1677: 1675: 1672: 1670: 1667: 1666: 1664: 1651: 1647: 1642: 1637: 1633: 1629: 1625: 1621: 1617: 1610: 1607: 1602: 1598: 1593: 1588: 1584: 1580: 1576: 1572: 1568: 1561: 1558: 1553: 1549: 1544: 1539: 1535: 1531: 1527: 1523: 1519: 1512: 1509: 1504: 1500: 1495: 1490: 1486: 1482: 1478: 1474: 1470: 1463: 1460: 1455: 1451: 1446: 1441: 1437: 1433: 1429: 1425: 1421: 1413: 1410: 1405: 1401: 1396: 1391: 1387: 1383: 1379: 1375: 1371: 1364: 1362: 1360: 1356: 1344: 1340: 1333: 1331: 1327: 1322: 1318: 1313: 1308: 1304: 1300: 1296: 1292: 1288: 1281: 1279: 1275: 1270: 1266: 1261: 1256: 1252: 1248: 1244: 1240: 1236: 1232: 1226: 1224: 1222: 1220: 1216: 1210: 1206: 1203: 1201: 1198: 1196: 1193: 1191: 1188: 1186: 1183: 1181: 1178: 1176: 1173: 1171: 1168: 1166: 1163: 1162: 1158: 1156: 1149: 1123: 1120: 1119: 1096: 1093: 1092: 1069: 1066: 1065: 1042: 1039: 1038: 1015: 1012: 1011: 988: 985: 984: 961: 958: 957: 934: 931: 930: 907: 904: 903: 880: 877: 876: 853: 850: 849: 826: 823: 822: 799: 796: 795: 772: 769: 768: 745: 742: 741: 718: 715: 714: 691: 688: 687: 664: 661: 660: 637: 634: 633: 610: 607: 606: 583: 580: 579: 556: 553: 552: 529: 526: 525: 502: 499: 498: 475: 472: 471: 448: 445: 444: 421: 418: 417: 394: 391: 390: 367: 364: 363: 340: 337: 336: 313: 310: 309: 305: 302: 299: 296: 293: 292: 286: 284: 280: 276: 275:illicit drugs 272: 263: 261: 259: 255: 251: 247: 243: 239: 235: 230: 228: 224: 220: 216: 212: 208: 204: 199: 195: 193: 189: 184: 180: 176: 172: 168: 158: 154: 150: 144: 141:Miscellaneous 139: 135: 125: 121: 117: 109: 105: 100: 96: 92: 89: 86: 82: 78: 76: 72: 67: 62: 56: 53:Drug database 52: 48: 43: 39: 34: 19: 1623: 1619: 1609: 1574: 1570: 1560: 1525: 1521: 1511: 1476: 1472: 1462: 1427: 1423: 1412: 1377: 1373: 1346:. Retrieved 1342: 1294: 1290: 1242: 1238: 1190:Pharmacology 1153: 1121: 1094: 1067: 1040: 1013: 986: 959: 932: 905: 878: 851: 824: 797: 770: 743: 716: 689: 662: 635: 608: 581: 554: 527: 500: 473: 446: 419: 392: 365: 338: 311: 267: 231: 217:) drugs, 96 200: 196: 166: 164: 146:Data release 123:Download URL 1231:Wishart, DS 238:metabolomic 50:Description 1663:Categories 1348:9 November 1211:References 250:pollutants 205:-approved 134:/downloads 84:Laboratory 58:Data types 294:Category 148:frequency 130:.drugbank 114:.drugbank 1650:16381955 1601:21059682 1552:24203708 1503:19897546 1454:18953024 1404:24203711 1321:18048412 1269:16381955 1159:See also 194:issues. 167:DrugBank 60:captured 31:DrugBank 18:Drugbank 1641:1347430 1592:3013709 1543:3965088 1494:2808899 1445:2686599 1395:3965102 1312:2238889 1260:1347430 215:peptide 211:protein 179:Alberta 107:Website 69:Contact 45:Content 1648:  1638:  1599:  1589:  1550:  1540:  1501:  1491:  1452:  1442:  1402:  1392:  1319:  1309:  1267:  1257:  1165:ChEMBL 656:14,150 651:13,795 646:13,242 246:toxins 227:enzyme 102:Access 1195:SMPDB 1061:4,115 1056:4,326 1051:3,037 1046:2,133 1034:7,713 1029:6,816 1024:4,897 1019:3,909 1007:7,561 1002:6,684 997:4,774 992:3,796 980:6,009 975:5,210 970:3,116 965:2,894 845:1,558 840:1,424 835:1,344 818:1,285 683:6,667 629:1,180 624:1,039 602:1,450 597:1,208 548:6,713 467:1,308 440:1,239 413:1,037 279:ADMET 234:FooDB 171:drugs 1646:PMID 1597:PMID 1548:PMID 1499:PMID 1450:PMID 1400:PMID 1350:2019 1317:PMID 1265:PMID 1200:T3DB 1180:KEGG 1175:HMDB 306:4.0 303:3.0 300:2.0 297:1.0 273:and 165:The 116:.com 1636:PMC 1628:doi 1587:PMC 1579:doi 1538:PMC 1530:doi 1489:PMC 1481:doi 1440:PMC 1432:doi 1390:PMC 1382:doi 1307:PMC 1299:doi 1255:PMC 1247:doi 1115:253 1110:169 1088:245 1083:164 953:190 948:189 943:188 872:155 867:132 862:123 857:113 830:841 791:384 764:306 737:791 678:890 673:276 619:714 575:201 570:113 521:623 516:516 408:762 386:232 381:168 332:208 327:148 322:108 203:FDA 132:.ca 128:www 112:www 1665:: 1644:. 1634:. 1624:34 1622:. 1618:. 1595:. 1585:. 1575:39 1573:. 1569:. 1546:. 1536:. 1526:42 1524:. 1520:. 1497:. 1487:. 1477:38 1475:. 1471:. 1448:. 1438:. 1428:37 1426:. 1422:. 1398:. 1388:. 1378:42 1376:. 1372:. 1358:^ 1341:. 1329:^ 1315:. 1305:. 1295:36 1293:. 1289:. 1277:^ 1263:. 1253:. 1243:34 1241:. 1237:. 1218:^ 1142:33 1137:31 1132:18 1127:12 926:78 921:68 916:57 899:87 894:82 889:69 884:61 813:38 808:38 710:23 705:14 494:53 359:18 354:16 349:12 317:88 260:. 1652:. 1630:: 1603:. 1581:: 1554:. 1532:: 1505:. 1483:: 1456:. 1434:: 1406:. 1384:: 1352:. 1323:. 1301:: 1271:. 1249:: 1105:0 1100:0 1078:0 1073:0 938:0 911:0 803:0 786:0 781:0 776:0 759:0 754:0 749:0 732:0 727:0 722:0 700:6 695:5 668:0 641:0 614:0 592:0 587:0 565:0 560:0 543:0 538:0 533:0 511:0 506:0 489:0 484:0 479:0 462:0 457:0 452:0 435:0 430:0 425:0 403:0 398:0 376:0 371:0 344:8 240:/ 213:/ 20:)

Index

Drugbank

Research center
David S. Wishart
www.drugbank.com
www.drugbank.ca/downloads
drugs
University of Alberta
Alberta
cheminformatics
Knowledge (XXG)
circular reporting
FDA
small molecule
protein
peptide
nutraceuticals
experimental drugs
enzyme
FooDB
metabolomic
cheminformatic
toxins
pollutants
metabolic pathways
food additives
withdrawn drugs
illicit drugs
ADMET
binding constants

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