29:
436:
Bastian FB, Parmentier G, Roux J, Moretti S, Laudet V, Robinson-Rechavi M (2008). "Bgee: Integrating and
Comparing Heterogeneous Transcriptome Data Among Species".
525:
Niknejad A, Mungall CJ, Osumi-Sutherland D, Robinson-Rechavi M, Bastian F (2022). "Creation and unification of development and life stage ontologies for animals".
706:
646:
691:
696:
453:
357:
Bgee produces calls of presence/absence of expression, and of differential over-/under-expression, integrated along with information of gene
285:
82:
654:
542:"BgeeDB, an R package for retrieval of curated expression datasets and for gene list expression localization enrichment tests"
701:
671:
400:
313:
289:
86:
681:
393:
309:
469:
Bastian FB, Roux J, Niknejad A, Comte A, Fonseca Costa SS, Mendes de Farias T, et al. (Jan 2021).
28:
408:
336:
281:
526:
362:
471:"The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals"
686:
676:
618:
587:"Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon"
573:
502:
449:
358:
208:
96:
638:
608:
598:
585:
Haendel MA, Balhoff JP, Bastian FB, Blackburn DC, Blake JA, Bradford Y, et al. (2014).
563:
553:
492:
482:
441:
385:
248:
404:
381:
366:
293:
180:
77:
613:
586:
568:
541:
497:
470:
305:
67:
Human, Mouse, Rat, Fruit-fly, Chicken, Roundworm, Wild boar, Zebrafish, Cow and others.
665:
347:
253:
558:
197:
445:
332:
193:
227:
416:
389:
343:
301:
214:
622:
603:
577:
506:
354:), to provide a comparable reference of healthy wild-type gene expression.
100:
540:
Komljenovic A, Roux J, Wollbrett J, Robinson-Rechavi M, Bastian F (2018).
487:
189:
62:
440:. Lecture Notes in Computer Science. Vol. 5109. pp. 124–131.
370:
351:
320:
297:
201:
412:
328:
317:
152:
185:
531:
377:
159:
639:"Bgee is a new ELIXIR Recommended Interoperability Resources"
415:
369:. This allows comparisons of expression patterns between
657:. SIB Swiss Institute of Bioinformatics. 4 January 2021.
140:
124:
323:. Bgee provides an intuitive answer to the question
57:
scRNA-Seq, RNA-Seq, Microarray, In situ and EST Data
403:representing "critical components for ensuring the
267:
259:
247:
242:
207:
179:
174:
151:
135:
119:
114:
106:
92:
76:
71:
61:
51:
43:
38:
649:. GCB Global Biodata Coalition. 11 December 2023.
419:-supporting activities in scientific research.
647:"Bgee joins the Global Core Biodata Resources"
342:Bgee is based exclusively on curated, healthy
47:Gene expression across species and conditions
8:
411:of life sciences research." Bgee is also an
19:
27:
18:
612:
602:
567:
557:
530:
496:
486:
428:
707:Science and technology in Switzerland
438:Data Integration in the Life Sciences
401:Global Core Biodata Resources (GCBRs)
286:SIB Swiss Institute of Bioinformatics
7:
190:TopAnat: Gene Expression Enrichment
692:Evolutionary developmental biology
33:Bgee gene expression database logo
14:
697:Subfields of evolutionary biology
83:Swiss Institute of Bioinformatics
292:for retrieval and comparison of
271:Manual curation of every study.
1:
559:10.12688/f1000research.9973.2
446:10.1007/978-3-540-69828-9_12
346:, expression data (i.e., no
641:. ELIXIR. 14 December 2023.
723:
325:where is a gene expressed?
327:and supports research in
316:studies, across multiple
26:
376:Bgee allows searches by
16:Gene expression database
604:10.1186/2041-1480-5-21
475:Nucleic Acids Research
290:University of Lausanne
87:University of Lausanne
702:Developmental biology
310:In situ hybridization
194:Expression comparison
337:evolutionary biology
488:10.1093/nar/gkaa793
394:developmental stage
350:, no treatment, no
198:Anatomical homology
23:
672:Genetics databases
591:J Biomed Semantics
399:Bgee is a part of
284:maintained by the
202:Raw data interface
481:(D1): D831–D847.
455:978-3-540-69827-2
275:
274:
254:CC0 1.0 Universal
714:
658:
650:
642:
626:
616:
606:
581:
571:
561:
536:
534:
511:
510:
500:
490:
466:
460:
459:
433:
238:
235:
233:
231:
229:
225:
222:
220:
218:
216:
170:
167:
165:
163:
161:
147:
144:
142:
131:
128:
126:
93:Primary citation
31:
24:
722:
721:
717:
716:
715:
713:
712:
711:
662:
661:
653:
645:
637:
634:
629:
584:
539:
524:
520:
518:Further reading
515:
514:
468:
467:
463:
456:
435:
434:
430:
425:
405:reproducibility
294:gene expression
268:Curation policy
226:
213:
200:
196:
192:
188:
158:
139:
123:
85:
78:Research center
53:
34:
17:
12:
11:
5:
720:
718:
710:
709:
704:
699:
694:
689:
684:
679:
674:
664:
663:
660:
659:
651:
643:
633:
632:External links
630:
628:
627:
582:
537:
521:
519:
516:
513:
512:
461:
454:
427:
426:
424:
421:
348:gene knock-out
296:patterns from
273:
272:
269:
265:
264:
261:
257:
256:
251:
245:
244:
240:
239:
211:
205:
204:
183:
177:
176:
172:
171:
156:
149:
148:
137:
133:
132:
121:
117:
116:
112:
111:
108:
104:
103:
94:
90:
89:
80:
74:
73:
69:
68:
65:
59:
58:
55:
49:
48:
45:
41:
40:
36:
35:
32:
15:
13:
10:
9:
6:
4:
3:
2:
719:
708:
705:
703:
700:
698:
695:
693:
690:
688:
685:
683:
680:
678:
675:
673:
670:
669:
667:
656:
652:
648:
644:
640:
636:
635:
631:
624:
620:
615:
610:
605:
600:
596:
592:
588:
583:
579:
575:
570:
565:
560:
555:
551:
547:
546:F1000Research
543:
538:
533:
528:
523:
522:
517:
508:
504:
499:
494:
489:
484:
480:
476:
472:
465:
462:
457:
451:
447:
443:
439:
432:
429:
422:
420:
418:
414:
410:
406:
402:
397:
395:
391:
387:
383:
379:
374:
372:
368:
364:
360:
355:
353:
349:
345:
340:
338:
335:, as well as
334:
330:
326:
322:
319:
315:
311:
307:
303:
299:
295:
291:
287:
283:
279:
270:
266:
262:
258:
255:
252:
250:
246:
243:Miscellaneous
241:
237:
224:
212:
210:
206:
203:
199:
195:
191:
187:
184:
182:
178:
173:
169:
157:
154:
150:
146:
138:
134:
130:
122:
118:
113:
109:
105:
102:
98:
95:
91:
88:
84:
81:
79:
75:
70:
66:
64:
60:
56:
50:
46:
42:
37:
30:
25:
22:
682:Open science
655:"About Bgee"
594:
590:
549:
545:
478:
474:
464:
437:
431:
398:
375:
356:
341:
324:
277:
276:
228:bioconductor
215:bioconductor
136:Download URL
107:Release date
20:
333:agriculture
186:Gene search
44:Description
666:Categories
532:2206.12231
423:References
306:Microarray
209:Standalone
52:Data types
409:integrity
390:cell type
361:, and of
359:orthology
344:wild-type
302:scRNA-Seq
234:/BgeeCall
232:/packages
219:/packages
110:June 2007
63:Organisms
687:Ontology
677:Genomics
623:25009735
578:30467516
552:: 2748.
507:33037820
365:between
363:homology
288:and the
282:database
155:endpoint
101:33037820
54:captured
614:4089931
569:6113886
498:7778977
371:species
352:disease
321:species
298:RNA-Seq
260:Version
249:License
221:/BgeeDB
166:/sparql
120:Website
72:Contact
39:Content
621:
611:
597:: 21.
576:
566:
505:
495:
452:
413:ELIXIR
386:tissue
367:organs
329:cancer
318:animal
153:Sparql
115:Access
99:
527:arXiv
382:organ
280:is a
175:Tools
162:.bgee
143:.bgee
127:.bgee
619:PMID
574:PMID
503:PMID
450:ISBN
417:FAIR
407:and
392:and
378:gene
331:and
312:and
278:Bgee
263:15.2
230:.org
217:.org
164:.org
145:.org
129:.org
97:PMID
21:Bgee
609:PMC
599:doi
564:PMC
554:doi
493:PMC
483:doi
442:doi
314:EST
181:Web
160:www
141:www
125:www
668::
617:.
607:.
593:.
589:.
572:.
562:.
548:.
544:.
501:.
491:.
479:49
477:.
473:.
448:.
396:.
388:/
384:/
380:,
373:.
339:.
308:,
304:,
300:,
625:.
601::
595:5
580:.
556::
550:5
535:.
529::
509:.
485::
458:.
444::
236:/
223:/
168:/
Text is available under the Creative Commons Attribution-ShareAlike License. Additional terms may apply.
