27:
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274:, the standard of model curation and annotation. The models have been simulated by curators to check that when run in simulations, they provide the same results as described in the publication. Model components are annotated, so the users can conveniently identify each model element and retrieve further information from other resources.
480:, Bornstein B., Broicher A., Courtot M., Donizelli M., Dharuri H., Li L., Sauro H., Schilstra M., Shapiro B., Snoep J.L., Hucka M. BioModels Database: A Free, Centralized Database of Curated, Published, Quantitative Kinetic Models of Biochemical and Cellular Systems. Nucleic Acids Research (2006), 34: D689-D691.
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Chelliah V., Juty N., Ajmera I., Raza A., Dumousseau M., Glont M., Hucka M., Jalowicki G., Keating S., Knight-Schrijver V., Lloret-Villas A., Natarajan K., Pettit J.-B., Rodriguez N., Schubert M., Wimalaratne S., Zhou Y., Hermjakob H., Le Novère N., Laibe C. BioModels: ten year anniversary. Nucleic
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BioModels is composed of several branches. The curated branch hosts models that are well curated and annotated. The non-curated-branch provides models that are still not curated, are non-curatable (spatial models, steady-state models etc.), or too huge to be curated. Non-curated models can be later
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BioModels announced its 31st release on June 26, 2017. It now publicly provides 144,710 models. This corresponds to 1,640 models published in the literature and 143,070 models automatically generated from pathway resources.
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repository for storing, exchanging and retrieving quantitative models of biological interest created in 2006. All the models in the curated section of BioModels
Database have been described in
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Li, Chen; Donizelli, Marco; Rodriguez, Nicolas; Dharuri, Harish; Endler, Lukas; Chelliah, Vijayalakshmi; Li, Lu; He, Enuo; Henry, Arnaud; Stefan, Melanie I; Snoep, Jacky L; Hucka, Michael;
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and Laibe C (2009) BioModels.net Web
Services, a free and integrated toolkit for computational modelling software, Briefings in Bioinformatics,
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moved into the curated branch. The repository also hosts models which were automatically generated from pathways databases.
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A repository for storing, exchanging and retrieving computational models of biological interest.
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Deposition of models in BioModels is advocated by many scientific journals, included
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Model display, multiple browsing strategies, advanced search, bulk download,
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The models stored in BioModels' curated branch are compliant with
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BioModels
Development has benefited from the funds of the
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BioModels is developed by the BioModels.net Team at the
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Biotechnology and
Biological Sciences Research Council
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460:National Center for Research Resources
394:and all the journals published by the
1096:Nobel Prize in Physiology or Medicine
436:European Molecular Biology Laboratory
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277:Modellers can submit the models in
337:Systems Biology Graphical Notation
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448:Seventh Framework Programme (FP7)
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16:Database of biological reactions
444:Innovative Medicines Initiative
414:, UK, the Le Novère lab at the
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600:Official website of BioModels
223:CC0 Public Domain Dedication
1127:Free biosimulation software
355:BioModels Database Pipeline
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396:Royal Society of Chemistry
386:, all the journals of the
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388:Public Library of Science
384:Molecular Systems Biology
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267:scientific literature.
710:Biological engineering
513:10.1186/1752-0509-4-92
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770:Computational biology
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1122:Biological databases
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900:Mathematical biology
825:Evolutionary biology
775:Conservation biology
52:computational models
800:Ecological genetics
644:Branches of biology
605:Caltech Mirror site
554:Li C., Courtot M.,
500:BMC Systems Biology
232:28 (September 2014)
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1132:Genetics databases
1091:History of biology
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835:Generative biology
830:Freshwater biology
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1070:Xenobiology
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855:Gerontology
820:Epigenetics
780:Cryobiology
670:Agrostology
660:Aerobiology
655:Abiogenesis
402:Development
261:open-source
182:Web service
130:Data format
39:Description
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506:(1): 92.
257:BioModels
119:Standards
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1084:See also
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845:Genomics
840:Genetics
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532:20587024
422:Team in
294:Archived
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100:20587024
78:EMBL-EBI
49:captured
1075:Zoology
805:Ecology
675:Anatomy
523:2909940
430:Funding
426:, USA.
424:Caltech
347:Content
318:RDF/XML
229:Version
218:License
175:EBI FTP
157:Website
151:RDF/XML
86:Caltech
67:Contact
34:Content
740:Botany
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454:, the
450:, the
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333:applet
314:BioPAX
310:Octave
306:SciLab
283:CellML
272:MIRIAM
147:Octave
143:SciLab
139:BioPAX
123:MIRIAM
114:Access
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456:DARPA
194:Tools
528:PMID
420:SBML
408:EMBL
330:Java
316:and
291:VCML
287:SBML
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188:SOAP
135:SBML
109:2005
96:PMID
560:doi
518:PMC
508:doi
412:EBI
341:PDF
326:SVG
322:PNG
302:XPP
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200:Web
184:URL
62:all
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Text is available under the Creative Commons Attribution-ShareAlike License. Additional terms may apply.
