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project has a similar structure to other Bio* projects, with a number of classes representing (amongst other things) DNA and protein sequences and sequence alignments. Each class is designed to be general enough to be useful in a number of BioPHP projects. Similarly, the
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projects aim to generate a set of PHP scripts for small, repetitive tasks; scripts in the Tools project generally have special requirements, such as interfacing with non-PHP scripts and/or code (written in, for instance,
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The BioPHP project grew out of GenePHP, which was started by Serge
Gregorio in 2003. GenePHP was conceived as a PHP-based implementation of similar bioinformatics packages such as
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project aims to create a number of functions to perform tasks on class objects and reduce code duplication between projects. The
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code, with classes for DNA and protein sequence analysis, alignment, database parsing, and other
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as an extension of GenePHP. GenePHP is one of the four projects currently forming BioPHP.
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version 2 licence and is one of a number of Bio* projects, designed to reduce
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115:. As an open source bioinformatics project, BioPHP is affiliated with the
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155:BioPHP is divided into four 'projects'. The
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237:"The Bio* toolkits--a brief overview"
107:tools. BioRuby is released under the
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191:Open Bioinformatics Foundation
117:Open Bioinformatics Foundation
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329:Free bioinformatics software
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309:An object-oriented BioPHP
334:Bioinformatics software
215:"BioPHP Wiki - Info"
254:10.1093/bib/3.3.296
235:Mangalam H (2002).
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98:open-source
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32:Written in
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220:13 August
166:Minitools
162:Functions
133:BioPython
73:version 2
263:12230038
185:See also
151:Projects
43:Platform
157:GenePHP
137:BioRuby
129:BioPerl
123:History
109:GNU GPL
78:Website
65:License
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94:BioPHP
83:biophp
17:BioPHP
170:Tools
145:Spain
284:2015
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175:Perl
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69:GNU
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71:GPL
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