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C-1027

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paradigms. The enediyne PKS, PKSE, from S. globisporusresponsible for the biosynthesis of the C-1027 enediyne is an ACP dependent protein with ketoacylsynthase (KS), acyltransferase (AT), ketoreductase (KR), and dehydratase (DH) domains. PKSE also contains a C-termianal PPTase domain, and the process is terminated by a thioesterase (TE). Starting with acetyl-CoA, PKSE iteratively combines 7 units of malonyl-CoA creating an intermediate heptaene, which is then catalyzed by accessory enzymes into a 9 membered enediyne. There is also a remarkable similarity between the biosynthesis of 9-membered and 10-membered enediynes such as the anticancer drug Calicheamicin.
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InChI=1S/C43H42ClN3O13/c1-21-39(52)46-34-26(17-25(54-6)18-30(34)56-21)40(53)57-31-20-55-33(49)19-28(45)23-15-27(44)37(29(48)16-23)58-32-11-7-9-22(31)12-13-24-10-8-14-43(24,32)60-41-36(51)35(50)38(47(4)5)42(2,3)59-41/h8-10,14-18,28,31-32,35-36,38,41,48,50-51H,1,19-20,45H2,2-6H3,(H,46,52)/b22-9+/t28-,31-,32+,35-,36+,38-,41-,43+/m0/s1
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The benzoxazolinate moiety is synthesized from chorismate, which itself is biosynthesized from the shipmate pathway. Chorismate is sequentially acted upon by a 2-amino-2-deoxyisochorismate synthase, and an iron–sulfur FMN-dependent ADIC dehydrogenase to synthesize 3-enolpyruvoylanthranilate (OPA).
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The β-amino acid moiety is a non-ribosomal peptide synthesized from tyrosine. The necessary enzymes for its biosynthesis include a phenol hydroxylase (SgcC), a nonribosomal peptide synthetase adenylation enzyme (SgcC1), an NRPS peptidyl–carrier protein (SgcC2), a halogenase (SgcC3), an aminomutase
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The deoxy aminosugar found in C-1027 is derived from 5-glucose-1-phosphate. The C-1027 gene cluster contains a thymine diphosphate glucose synthetase (SgcA1), a TDP-glucose 4,6-dehydratase (SgcA2), a TDP-4-keto-6-deoxyglucose epimerase (SgcA2), a C-methyl transferase (SgcA3), an amino transferase
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The structure of C-1027 is composed of a nine-membered enediyne complex, a deoxygenated aminosugar, a β-amino acid, and a benzoxazolinate moiety. Enediynes contain a double bond between two triple bonds, and their biosynthesis is distinct from other known polyketide and fatty-acid synthesis
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species. C-1027 can induce oxygen-independent interstrand DNA crosslinks in addition to the oxygen-dependent single- and double-stranded DNA breaks typically generated by other enediynes. This unique oxygen-independent mechanism suggests that C-1027 may be effective against
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Alhert J, Shepard E, Lomovskaya N, Zazopoulos E, Staffa A, Bachmann BO, Huang K, Fonstein L, Czisny A, Whitwam RE, Farnet CM, Thorson JS (2002). "The Calicheamicin Gene Cluster and Its Iterative Type I Enediyne PKS".
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in many cancer cells and recent studies have indicated that it induces unusual DNA damage responses to double-strand breaks, including altering cell cycle progression and inducing chromosomal aberrations.
360:. Unlike other enediynes, this molecule contains no triggering mechanism. It is already primed to undergo the cycloaromatization reaction without external activation to produce the toxic 1,4-benzenoid 42:(3R,4R,14R,19S)-22-chloro-4-{oxy}-23-hydroxy-14-(3-hydroxy-7-methoxy-2-methylidene-2H-1,4-benzoxazine-5-carbonyloxy)-17-oxo-2,16-dioxapentacyclopentacosa-1(22),5,7,9,11,13(25),20,23-octaen-19-aminium 420:(SgcA4), an N-methyl transferase (SgcA5), and a glycosyl transferase (SgcA6). These are all the necessary enzymes to synthesize the deoxy aminosugar and attach it to the enediyne core. 761:
Xu YJ, Zhen YS, Goldberg IH (May 1994). "C1027 chromophore, a potent new enediyne antitumor antibiotic, induces sequence-specific double-strand DNA cleavage".
847:"Draft genome sequence of Streptomyces globisporus C-1027, which produces an antitumor antibiotic consisting of a nine-membered enediyne with a chromoprotein" 235: 248:
Aromatized chromophore:: N1C(=O)C(=C)OC2=CC(OC)=CC(C(=O)O3COC(=O)C(C4=CC(O)=C(O5()C6=C(C=C3C=C6)C3=CC=C53O3OC(C)(C)((O)3O)N(C)C)C(Cl)=C4)()())=C12
798:"Improvement of the enediyne antitumor antibiotic C-1027 production by manipulating its biosynthetic pathway regulation in Streptomyces globisporus" 1189: 523:"A new macromolecular antitumor antibiotic, C-1027. I. Discovery, taxonomy of producing organism, fermentation and biological activity" 1289: 644:
Ken-ichiro Y, Minami Y, Azuma R, Saeki M, Otani T (1993). "Structure and cycloaromatization of a novel enediyne, C-1027 chromophore".
437:(SgcC4), and an NRPS-condensation enzyme (SgcC5). All of these enzymes are encoded for within the C-1027 biosynthetic gene cluster. 210: 1003:"A phosphopantetheinylating polyketide synthase producing a linear polyene to initiate enediyne antitumor antibiotic biosynthesis" 470:
The four building blocks are then combined into C-1027, although the exact mechanisms and order of this is relatively unknown.
1304: 308: 1299: 496: 1114:"Biosynthesis of the enediyne antitumor antibiotic C-1027 involves a new branching point in chorismate metabolism" 243:
CC1(((((O1)O23C=CC=C2C#C/C/4=C\C#C3OC5=C(C=C(C=C5Cl)(CC(=O)OC4OC(=O)C6=CC(=CC7=C6NC(=O)C(=C)O7)OC)N)O)O)O)N(C)C)C
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molecules known, due to its induction of a higher ratio of DNA double-strand breaks than single-strand breaks.
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Liu W, Christenson S, Standage S, Shen B (2002). "Biosynthesis of the Enediyne Antitumor Antibiotic C-1027".
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C-1027's chromophore contains a nine-membered enediyne that is responsible for most of the molecule's
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Liang ZX (April 2010). "Complexity and simplicity in the biosynthesis of enediyne natural products".
357: 1258: 564:"A new macromolecular antitumor antibiotic, C-1027. II. Isolation and physico-chemical properties" 1294: 1175: 1094: 983: 1153: 1086: 1042: 975: 925: 876: 827: 778: 740: 688: 626: 585: 544: 142: 1227: 1143: 1133: 1078: 1032: 1022: 967: 915: 907: 866: 858: 817: 809: 770: 730: 722: 711:"Lidamycin shows highly potent cytotoxic to myeloma cells and inhibits tumor growth in mice" 680: 653: 616: 575: 534: 263: 25: 1263: 1129: 1074: 1018: 963: 102: 1148: 1113: 1037: 1002: 920: 895: 871: 846: 822: 797: 735: 710: 302: 1001:
Shen B, Zhiang J, Van Lanen SG, Ju J, Liu W, Dorrestein PC, Li W, Kelleher NL (2008).
657: 1278: 1243: 366: 987: 896:"Enediynes: Exploration of microbial genomics to discover new anticancer drug leads" 423: 196: 188: 1222: 1098: 894:
Shen B, Yan X, Huang T, Ge H, Yang D, Teng Q, Rudolf JD, Lohman JR (January 2015).
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Hu J, Xue YC, Xie MY, Zhang R, Otani T, Minami Y, Yamada Y, Marunaka T (1988).
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OPA is then further catalyzed into the benzoxazolinate precursor for C-1027.
1138: 1082: 1027: 971: 605:"A new macromolecular antitumor antibiotic, C-1027. III. Antitumor activity" 385: 361: 350: 342: 328: 1157: 1090: 1046: 979: 929: 880: 831: 744: 692: 782: 630: 589: 548: 406: 1198: 335: 153: 862: 774: 726: 163: 473: 380:
C-1027 shows promise as an anticancer drug and is currently undergoing
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Except where otherwise noted, data are given for materials in their
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Zhen YS, Ming XY, Yu B, Otani T, Saito H, Yamada Y (1989).
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Wang L, Wang S, He Q, Yu T, Li Q, Hong B (August 2012).
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Otani T, Minami Y, Marunaka T, ZHANG R, Xie MY (1988).
1236: 1205: 1118:Proceedings from the National Academy of Sciences 1007:Proceedings from the National Academy of Sciences 384:in China, with a 30% success rate. It can induce 796:Chen Y, Yin M, Horsman GP, Shen B (March 2011). 195: 187: 1183: 345:. It shows antibiotic activity against most 8: 900:Bioorganic & Medicinal Chemistry Letters 709:Zhen YZ, Lin YJ, Li Y, Zhen YS (July 2009). 704: 702: 1190: 1176: 1168: 945: 943: 941: 939: 141: 17: 1147: 1137: 1036: 1026: 919: 870: 821: 756: 754: 734: 620: 579: 538: 487: 240: 215: 162: 222:Key: DGGZCXUXASNDAC-QQNGCVSVSA-N 121: 101: 7: 1112:Shen B, Van Lanen SG, Lin S (2008). 178: 14: 24: 349:. It is one of the most potent 305:(at 25 °C , 100 kPa). 334:consisting of a complex of an 194:Aromatized chromophore:: 161:Aromatized chromophore:: 80:Aromatized chromophore:: 1: 658:10.1016/S0040-4039(00)77644-1 427:Deoxy Aminosugar Biosynthesis 295:844.267 g·mol−1 461:Benzoxazolinate Biosynthesis 802:Journal of Natural Products 622:10.7164/antibiotics.42.1294 581:10.7164/antibiotics.41.1580 540:10.7164/antibiotics.41.1575 1321: 912:10.1016/j.bmcl.2014.11.019 715:Acta Pharmacologica Sinica 609:The Journal of Antibiotics 568:The Journal of Antibiotics 527:The Journal of Antibiotics 1290:Experimental cancer drugs 444:B-Amino Acid Biosynthesis 299: 256: 231: 206: 55: 47: 37: 32: 23: 501:pubchem.ncbi.nlm.nih.gov 382:phase II clinical trials 1139:10.1073/pnas.0708750105 1083:10.1126/science.1072105 1028:10.1073/pnas.0711625105 972:10.1126/science.1072110 851:Journal of Bacteriology 673:Natural Product Reports 478: 462: 445: 428: 411: 377: 347:Gram-positive bacteria 476: 460: 443: 426: 410:Enediyne Biosynthesis 409: 375: 50:Lidamycin chromophore 1305:Vinylidene compounds 1300:Nine-membered rings 1130:2008PNAS..105..494V 1075:2002Sci...297.1173A 1069:(5584): 1173–1176. 1019:2008PNAS..105.1460Z 964:2002Sci...297.1170L 958:(5584): 1170–1173. 863:10.1128/JB.00797-12 775:10.1021/bi00185a036 727:10.1038/aps.2009.75 477:C-1027 Biosynthesis 367:hypoxic tumor cells 358:biological activity 20: 19:C-1027 chromophore 479: 463: 446: 429: 412: 378: 309:Infobox references 18: 1272: 1271: 1237:10 membered rings 814:10.1021/np100825y 652:(16): 2637–2640. 574:(11): 1580–1585. 533:(11): 1575–1579. 317:Chemical compound 315: 314: 83:Interactive image 75:Interactive image 1312: 1228:Neocarzinostatin 1206:9 membered rings 1192: 1185: 1178: 1169: 1162: 1161: 1151: 1141: 1109: 1103: 1102: 1057: 1051: 1050: 1040: 1030: 1013:(5): 1460–1465. 998: 992: 991: 947: 934: 933: 923: 891: 885: 884: 874: 842: 836: 835: 825: 793: 787: 786: 758: 749: 748: 738: 706: 697: 696: 685:10.1039/b908165h 668: 662: 661: 646:Tetrahedron Lett 641: 635: 634: 624: 615:(8): 1294–1298. 600: 594: 593: 583: 559: 553: 552: 542: 518: 512: 511: 509: 507: 492: 415:Deoxy Aminosugar 376:C-1027 Mechanism 264:Chemical formula 199: 191: 180: 166: 145: 125: 105: 85: 77: 28: 21: 1320: 1319: 1315: 1314: 1313: 1311: 1310: 1309: 1275: 1274: 1273: 1268: 1264:Shishijimicin A 1232: 1201: 1196: 1166: 1165: 1111: 1110: 1106: 1059: 1058: 1054: 1000: 999: 995: 949: 948: 937: 893: 892: 888: 844: 843: 839: 795: 794: 790: 769:(19): 5947–54. 760: 759: 752: 708: 707: 700: 670: 669: 665: 643: 642: 638: 602: 601: 597: 561: 560: 556: 520: 519: 515: 505: 503: 494: 493: 489: 484: 468: 451: 449:Benzoxazolinate 434: 417: 400: 395: 318: 311: 306: 284: 280: 276: 272: 266: 252: 249: 244: 239: 238: 227: 224: 223: 220: 214: 213: 202: 181: 169: 148: 128: 108: 88: 67: 51: 43: 12: 11: 5: 1318: 1316: 1308: 1307: 1302: 1297: 1292: 1287: 1277: 1276: 1270: 1269: 1267: 1266: 1261: 1256: 1251: 1246: 1240: 1238: 1234: 1233: 1231: 1230: 1225: 1220: 1215: 1209: 1207: 1203: 1202: 1197: 1195: 1194: 1187: 1180: 1172: 1164: 1163: 1124:(2): 494–499. 1104: 1052: 993: 935: 886: 837: 788: 750: 721:(7): 1025–32. 698: 679:(4): 499–528. 663: 636: 595: 554: 513: 486: 485: 483: 480: 467: 464: 450: 447: 433: 430: 416: 413: 399: 396: 394: 391: 316: 313: 312: 307: 303:standard state 300: 297: 296: 293: 287: 286: 282: 278: 274: 270: 267: 262: 259: 258: 254: 253: 251: 250: 247: 245: 242: 234: 233: 232: 229: 228: 226: 225: 221: 218: 217: 209: 208: 207: 204: 203: 201: 200: 192: 184: 182: 174: 171: 170: 168: 167: 158: 156: 150: 149: 147: 146: 138: 136: 130: 129: 127: 126: 118: 116: 110: 109: 107: 106: 98: 96: 90: 89: 87: 86: 78: 70: 68: 61: 58: 57: 53: 52: 49: 45: 44: 41: 35: 34: 30: 29: 13: 10: 9: 6: 4: 3: 2: 1317: 1306: 1303: 1301: 1298: 1296: 1293: 1291: 1288: 1286: 1283: 1282: 1280: 1265: 1262: 1260: 1257: 1255: 1252: 1250: 1247: 1245: 1244:Calicheamicin 1242: 1241: 1239: 1235: 1229: 1226: 1224: 1221: 1219: 1216: 1214: 1211: 1210: 1208: 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Retrieved 500: 490: 469: 452: 435: 432:β-Amino Acid 418: 401: 393:Biosynthesis 379: 355: 324: 320: 319: 123:ChEMBL506048 56:Identifiers 48:Other names 15: 1285:Antibiotics 1254:Esperamicin 1249:Dynemicin A 906:(1): 9–15. 497:"Lidamycin" 339:chromophore 257:Properties 103:CHEBI:68320 1279:Categories 1218:Kedarcidin 482:References 343:apoprotein 332:antibiotic 291:Molar mass 134:ChemSpider 62:3D model ( 39:IUPAC name 1295:Enediynes 1199:Enediynes 495:Pubchem. 386:apoptosis 362:diradical 351:cytotoxic 329:antitumor 325:lidamycin 1158:18182490 1091:12183629 1047:18223152 988:52817812 980:12183628 930:25434000 881:22815456 832:21250756 745:19575006 693:20336235 398:Enediyne 336:enediyne 154:DrugBank 1149:2206564 1126:Bibcode 1099:8227050 1071:Bibcode 1063:Science 1038:2234166 1015:Bibcode 960:Bibcode 952:Science 921:4480864 872:3416545 823:3064734 783:8180224 736:4006655 631:2759910 590:3198492 549:3198491 341:and an 285: 197:5289301 189:9962646 176:PubChem 164:DB03933 143:8138248 1213:C-1027 1156:  1146:  1097:  1089:  1045:  1035:  986:  978:  928:  918:  879:  869:  830:  820:  781:  743:  733:  691:  629:  588:  547:  466:C-1027 327:is an 321:C-1027 236:SMILES 114:ChEMBL 33:Names 1095:S2CID 984:S2CID 506:5 May 211:InChI 94:ChEBI 64:JSmol 1154:PMID 1087:PMID 1043:PMID 976:PMID 926:PMID 877:PMID 828:PMID 779:PMID 741:PMID 689:PMID 627:PMID 586:PMID 545:PMID 508:2018 1144:PMC 1134:doi 1122:105 1079:doi 1067:297 1033:PMC 1023:doi 1011:105 968:doi 956:297 916:PMC 908:doi 867:PMC 859:doi 855:194 818:PMC 810:doi 771:doi 731:PMC 723:doi 681:doi 654:doi 617:doi 576:doi 535:doi 323:or 277:ClN 179:CID 1281:: 1152:. 1142:. 1132:. 1120:. 1116:. 1093:. 1085:. 1077:. 1065:. 1041:. 1031:. 1021:. 1009:. 1005:. 982:. 974:. 966:. 954:. 938:^ 924:. 914:. 904:25 902:. 898:. 875:. 865:. 853:. 849:. 826:. 816:. 806:74 804:. 800:. 777:. 767:33 765:. 753:^ 739:. 729:. 719:30 717:. 713:. 701:^ 687:. 677:27 675:. 650:34 648:. 625:. 613:42 611:. 607:. 584:. 572:41 570:. 566:. 543:. 531:41 529:. 525:. 499:. 369:. 283:13 275:42 271:43 1191:e 1184:t 1177:v 1160:. 1136:: 1128:: 1101:. 1081:: 1073:: 1049:. 1025:: 1017:: 990:. 970:: 962:: 932:. 910:: 883:. 861:: 834:. 812:: 785:. 773:: 747:. 725:: 695:. 683:: 660:. 656:: 633:. 619:: 592:. 578:: 551:. 537:: 510:. 281:O 279:3 273:H 269:C 66:)

Index


IUPAC name
JSmol
Interactive image
Interactive image
ChEBI
CHEBI:68320
ChEMBL
ChEMBL506048
ChemSpider
8138248
DrugBank
DB03933
PubChem
9962646
5289301
InChI
SMILES
Chemical formula
Molar mass
standard state
Infobox references
antitumor
antibiotic
enediyne
chromophore
apoprotein
Gram-positive bacteria
cytotoxic
biological activity

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