Knowledge (XXG)

Enediyne

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Differences in the biosynthetic pathways of enediynes are due to the different origins of the -yne carbons as well as differences in isotope incorporation patterns. More differentiation comes from the attachment of various functional groups at different positions to the enediyne warheads during their
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that acts as a nucleophile and attacks electrophiles in order to achieve a more stable form. In biological systems, once the diradical is positioned in the minor groove of double-stranded DNA, it abstracts two hydrogen atoms from the sugars opposite strands at either the C1, C4, or C5 positions. The
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Due to the cytotoxicity of the enediyne chromophores, their biosynthesis is tightly regulated, although the regulatory mechanisms are still largely unclear. Organisms that produce enediynes have been shown to protect themselves with a self-resistance mechanism that uses a self-sacrificing protein.
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Bergman cyclization restructures the enediyne ring into two smaller rings. One electron from each of the enediyne triple bonds is pushed to the adjacent single bonds, generating two new double bonds. Meanwhile, another pair of electrons (one from each alkyne) is used form a new covalent bond. The
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A generic enediyne molecule is pictured above. During Myers-Saito cyclization, electrons pushing begins at the diene and generates an unstable cumulene. This cumulene and the nearby alkyne donate one electron to split the enediyne ring into two fused
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or Myers-Saito cyclization. The triggering mechanism can be attributed to an intramolecular nucleophilic attack initiated by one of the variable regions of the molecule. Triggering can also occur via attack by an external nucleophile.
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protein H1. Neocarzinostatin is an example of an enediyne that undergoes triggering via Myers-Saito cyclization. An analog of neocarzinostatin, SMANCS, has been approved for use in Japan as an antitumor drug for liver cancer.
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with a double bond in a variable group. A nucleophile will attack the double bond in the variable region, causing a chain reaction of electron pushing. Ultimately, one of the triple bonds of the enediyne is converted to a
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A nine- or ten-membered ring containing a double bond between two triple bonds is termed the warhead of the enediyne. In this state, the warhead is inactive. Enediynes are triggered into a chemically active state via
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Golik J, Clardy J, Dubay G, Groenewold G, Kawaguchi H, Konishi M, Krishnan B, Ohkuma H, Saitoh K (May 1987). "Esperamicins, a novel class of potent antitumor antibiotics. 2. Structure of esperamicin X".
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Golfomycin A is a synthetic enediyne molecule designed in an attempt to create a more easily manufactured antitumor antibiotic. DNA strand-scission induced by golfomycin A is pH dependent. Preliminary
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of China. Unlike most enediynes, C-1027 does not undergo a triggering process to become an activated 1,4-benzenoid diradical. C-1027 has demonstrated potential efficacy against hypoxic tumors.
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Unno R, Michishita H, Inagaki H, Suzuki Y, Baba Y, Jomori T, Nishikawa T, Isobe M (May 1997). "Synthesis and antitumor activity of water-soluble enediyne compounds related to dynemicin A".
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organisms. Calicheamicin γ1 exhibited significant antitumor activity against leukemia and melanoma cells in vivo. The calicheamicins are notably similar in structure to the esperamicins.
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Myers-Saito cyclization is another triggering mechanism by which an enediyne warhead becomes a diradical. This mechanism requires the alkene of the enediyne to be part of a
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Nicolaou KC, Skokotas G, Furuya S, Suemune H, Nicolaou DC (September 1990). "Golfomycin A, a Novel Designed Molecule with DNA-Cleaving Properties and Antitumor Activity".
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Notably, some microbes use CalC to sequester calicheamicin so that the reactive diradical abstracts hydrogens from a glycine inside of the protein instead of from DNA.
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Members of the enediyne family all share a unique enediyne core that is the cause of their potent cytotoxicity. The enediyne cores are derived from linear, probably
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maturation stage. These moieties can be either aromatic or sugars and define sequence specificity of DNA binding as well as the physical properties of the enediyne
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Xu YJ, Zhen YS, Goldberg IH (May 1994). "C1027 chromophore, a potent new enediyne antitumor antibiotic, induces sequence-specific double-strand DNA cleavage".
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group attached to their ring, making Bergman cyclization unfavorable due to steric hindrance. For Bergman cyclization to occur, the epoxide must be removed.
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Electron pushing that occurs during Bergman cyclization in a generic enediyne molecule. A 1,4-benzenoid diradical fused to another ring is the result.
523:"Improvement of the enediyne antitumor antibiotic C-1027 production by manipulating its biosynthetic pathway regulation in Streptomyces globisporus" 349:
as a variable group attached to the enediyne core. Dynemycins have demonstrated strong antitumor activity against leukemia and melanoma cells.
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The esperamicins are a sub-family of enediynes that are considered among the most potent antitumor antibiotics discovered. First isolated in
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because they have an attached protein as a variable group. This protein is necessary for transport and stabilization of the enediyne group.
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Enediynes have been split into two sub-families: those with nine members in the core enediyne ring and those with ten-membered rings.
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Abstraction of hydrogen from either the C1, C4, or C5 position of the sugar phosphate backbone of DNA by a reactive 1,4-benzenoid
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has confirmed the polyketide origin of the enediyne core, and elucidated the biosynthetic pathways and mechanisms of enediynes.
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There are fourteen naturally occurring enediynes. The other existing classes of enediynes have been synthesized in the lab.
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resulting formation is a 1,4-benzenoid diradical fused to a ring composed of the leftover atoms from the original enediyne.
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Maiese WM, Lechevalier MP, Lechevalier HA, Korshalla J, Kuck N, Fantini A, Wildey MJ, Thomas J, Greenstein M (April 1989).
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Konishi M, Ohkuma H, Matsumoto K, Tsuno T, Kamei H, Miyaki T, Oki T, Kawaguchi H, VanDuyne GD, Clardy J (September 1989).
718:"The biosynthetic genes encoding for the production of the dynemicin enediyne core in Micromonospora chersina ATCC53710" 113: 1277: 1272: 286: 92:
from healthy cells. Consequently, research is being conducted to increase the specificity of enediyne toxicity.
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Maeda H (March 2001). "SMANCS and polymer-conjugated macromolecular drugs: advantages in cancer chemotherapy".
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Liang ZX (April 2010). "Complexity and simplicity in the biosynthesis of enediyne natural products".
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The dynemicins are a sub-family of enediynes whose members are organic compounds generated in
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The cyclization of the enediyne functional group creates a transient reactive 1,4-benzenoid
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Shen B, Hindra, Yan X, Huang T, Ge H, Yang D, Teng Q, Rudolf JD, Lohman JR (January 2015).
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The diradicals generated by Bergman and Myers-Saito cyclization are highly reactive.
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studies have demonstrated that golfomycin A can reduce carcinomas in bladder cells.
1195: 1030:"Dynemicin A, a novel antibiotic with the anthraquinone and 1,5-diyn-3-ene subunit" 191: 157: 85: 77: 1226: 1221: 1046: 1029: 969:
Sugiura Y, Uesawa Y, Takahashi Y, Kuwahara J, Golik J, Doyle TW (October 1989).
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Proceedings of the National Academy of Sciences of the United States of America
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Proceedings of the National Academy of Sciences of the United States of America
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was the first member of this sub-family to be discovered. It was isolated from
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is one of the most potent antitumor enediynes. C-1027 was first isolated from
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The calicheamicins are a sub-family of enediynes that were isolated from
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Heyd B, Lerat G, Adjadj E, Minard P, Desmadril M (April 2000).
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Any organic compound containing one double and two triple bonds
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Smith AL, Nicolaou KC (May 1996). "The enediyne antibiotics".
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in India. Dynemicins are violet in color because they contain
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Enediynes are most notable for their limited use as antitumor
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The nine-membered enediynes are also referred to as
1209: 1178: 1111:Angewandte Chemie International Edition in English 170:DNA radicals that form can then cause interstrand 321:groups induce triggering among the esperamicins. 664:"Biosynthesis of enediyne antitumor antibiotics" 521:Chen Y, Yin M, Horsman GP, Shen B (March 2011). 1156: 8: 619:Bioorganic & Medicinal Chemistry Letters 608: 606: 516: 514: 400:Nicolaou KC, Smith AL, Yue EW (July 1993). 1163: 1149: 1141: 1045: 1004: 994: 906: 790: 741: 687: 638: 546: 435: 425: 341:in a soil sample taken from the state of 936:Journal of the American Chemical Society 392: 884: 882: 880: 1104: 1102: 1100: 928: 926: 711: 709: 707: 668:Current Topics in Medicinal Chemistry 7: 1071:Bioorganic & Medicinal Chemistry 570: 568: 566: 221:Nine-membered rings (chromoproteins) 80:). They are efficient at inducing 14: 734:10.1111/j.1574-6968.2008.01112.x 267:in a soil sample taken from the 37: 23: 783:10.1128/jb.182.7.1812-1818.2000 816:Advanced Drug Delivery Reviews 716:Gao Q, Thorson JS (May 2008). 485:Journal of Medicinal Chemistry 1: 1083:10.1016/s0968-0896(97)00037-0 828:10.1016/s0169-409x(00)00134-4 662:Van Lanen SG, Shen B (2008). 30:The enediyne functional group 242:Streptomyces carzinostaticus 1047:10.7164/antibiotics.42.1449 527:Journal of Natural Products 311:Actinomadura verrucosospora 88:, but cannot differentiate 1294: 1034:The Journal of Antibiotics 908:10.7164/antibiotics.42.558 895:The Journal of Antibiotics 680:10.2174/156802608783955656 631:10.1016/j.bmcl.2014.11.019 287:Micromonospora echinospora 722:FEMS Microbiology Letters 464:www.organic-chemistry.org 257:Also known as lidamycin, 264:Streptomyces globisporus 240:is a natural product of 96:Structure and reactivity 996:10.1073/pnas.86.20.7672 771:Journal of Bacteriology 577:Natural Product Reports 427:10.1073/pnas.90.13.5881 331:Micromonospora chersina 121:Some enediynes have an 1123:10.1002/anie.199010641 162: 146: 118: 78:anticancer antibiotics 460:"Bergman Cyclization" 160: 143: 116: 987:1989PNAS...86.7672S 948:10.1021/ja00245a048 863:10.1021/bi00185a036 418:1993PNAS...90.5881N 269:Qian-Jiang District 153:Mechanism of action 76:(known as enediyne 275:Ten-membered rings 163: 147: 119: 1278:Conjugated enynes 1273:Functional groups 1245: 1244: 1210:10 membered rings 942:(11): 3461–3462. 539:10.1021/np100825y 497:10.1021/jm9600398 317:. Compounds with 315:A. verrucosospora 59:organic compounds 1285: 1201:Neocarzinostatin 1179:9 membered rings 1165: 1158: 1151: 1142: 1135: 1134: 1117:(9): 1064–1067. 1106: 1095: 1094: 1066: 1060: 1059: 1049: 1025: 1019: 1018: 1008: 998: 966: 960: 959: 930: 921: 920: 910: 886: 875: 874: 846: 840: 839: 811: 805: 804: 794: 762: 756: 755: 745: 713: 702: 701: 691: 659: 653: 652: 642: 610: 601: 600: 589:10.1039/b908165h 572: 561: 560: 550: 518: 509: 508: 480: 474: 473: 471: 470: 456: 450: 449: 439: 429: 397: 371:Enyne metathesis 238:Neocarzinostatin 233:Neocarzinostatin 41: 27: 1293: 1292: 1288: 1287: 1286: 1284: 1283: 1282: 1263:Cancer research 1248: 1247: 1246: 1241: 1237:Shishijimicin A 1205: 1174: 1169: 1139: 1138: 1108: 1107: 1098: 1068: 1067: 1063: 1027: 1026: 1022: 968: 967: 963: 932: 931: 924: 888: 887: 878: 857:(19): 5947–54. 848: 847: 843: 822:(1–3): 169–85. 813: 812: 808: 764: 763: 759: 715: 714: 705: 661: 660: 656: 612: 611: 604: 574: 573: 564: 520: 519: 512: 491:(11): 2103–17. 482: 481: 477: 468: 466: 458: 457: 453: 399: 398: 394: 389: 367: 355: 327: 307: 282: 277: 255: 235: 223: 212: 184: 177: 174:or react with O 155: 98: 90:cancerous cells 61:containing two 52: 51: 50: 49: 48: 42: 33: 32: 31: 28: 17: 12: 11: 5: 1291: 1289: 1281: 1280: 1275: 1270: 1265: 1260: 1250: 1249: 1243: 1242: 1240: 1239: 1234: 1229: 1224: 1219: 1213: 1211: 1207: 1206: 1204: 1203: 1198: 1193: 1188: 1182: 1180: 1176: 1175: 1170: 1168: 1167: 1160: 1153: 1145: 1137: 1136: 1096: 1061: 1040:(9): 1449–52. 1020: 981:(20): 7672–6. 961: 922: 876: 841: 806: 757: 703: 654: 602: 583:(4): 499–528. 562: 510: 475: 451: 412:(13): 5881–8. 391: 390: 388: 385: 384: 383: 378: 373: 366: 363: 354: 351: 326: 323: 306: 303: 281: 280:Calicheamicins 278: 276: 273: 254: 251: 234: 231: 227:chromoproteins 222: 219: 211: 208: 183: 180: 175: 154: 151: 97: 94: 43: 36: 35: 34: 29: 22: 21: 20: 19: 18: 15: 13: 10: 9: 6: 4: 3: 2: 1290: 1279: 1276: 1274: 1271: 1269: 1266: 1264: 1261: 1259: 1256: 1255: 1253: 1238: 1235: 1233: 1230: 1228: 1225: 1223: 1220: 1218: 1217:Calicheamicin 1215: 1214: 1212: 1208: 1202: 1199: 1197: 1194: 1192: 1189: 1187: 1184: 1183: 1181: 1177: 1173: 1166: 1161: 1159: 1154: 1152: 1147: 1146: 1143: 1132: 1128: 1124: 1120: 1116: 1112: 1105: 1103: 1101: 1097: 1092: 1088: 1084: 1080: 1077:(5): 987–99. 1076: 1072: 1065: 1062: 1057: 1053: 1048: 1043: 1039: 1035: 1031: 1024: 1021: 1016: 1012: 1007: 1002: 997: 992: 988: 984: 980: 976: 972: 965: 962: 957: 953: 949: 945: 941: 937: 929: 927: 923: 918: 914: 909: 904: 901:(4): 558–63. 900: 896: 892: 885: 883: 881: 877: 872: 868: 864: 860: 856: 852: 845: 842: 837: 833: 829: 825: 821: 817: 810: 807: 802: 798: 793: 788: 784: 780: 777:(7): 1812–8. 776: 772: 768: 761: 758: 753: 749: 744: 739: 735: 731: 728:(1): 105–14. 727: 723: 719: 712: 710: 708: 704: 699: 695: 690: 685: 681: 677: 674:(6): 448–59. 673: 669: 665: 658: 655: 650: 646: 641: 636: 632: 628: 624: 620: 616: 609: 607: 603: 598: 594: 590: 586: 582: 578: 571: 569: 567: 563: 558: 554: 549: 544: 540: 536: 532: 528: 524: 517: 515: 511: 506: 502: 498: 494: 490: 486: 479: 476: 465: 461: 455: 452: 447: 443: 438: 433: 428: 423: 419: 415: 411: 407: 403: 396: 393: 386: 382: 379: 377: 374: 372: 369: 368: 364: 362: 360: 352: 350: 348: 347:anthraquinone 344: 340: 336: 332: 324: 322: 320: 316: 312: 304: 302: 300: 298: 297:Gram-negative 294: 293:Gram-positive 290: 288: 279: 274: 272: 270: 266: 265: 260: 252: 250: 247: 243: 239: 232: 230: 228: 220: 218: 215: 209: 207: 203: 201: 195: 193: 192:gene clusters 189: 181: 179: 173: 168: 159: 152: 150: 142: 138: 136: 131: 126: 124: 115: 111: 107: 104: 95: 93: 91: 87: 83: 79: 75: 70: 68: 64: 60: 56: 46: 45:Calicheamicin 40: 26: 1232:Golfomycin A 1196:Maduropeptin 1171: 1114: 1110: 1074: 1070: 1064: 1037: 1033: 1023: 978: 974: 964: 939: 935: 898: 894: 854: 851:Biochemistry 850: 844: 819: 815: 809: 774: 770: 760: 725: 721: 671: 667: 657: 622: 618: 580: 576: 533:(3): 420–4. 530: 526: 488: 484: 478: 467:. Retrieved 463: 454: 409: 405: 395: 358: 356: 353:Golfomycin A 338: 330: 328: 314: 310: 308: 305:Esperamicins 301: 285: 283: 262: 256: 241: 236: 224: 216: 213: 204: 200:chromophores 196: 185: 182:Biosynthesis 164: 148: 127: 120: 108: 99: 71: 63:triple bonds 54: 53: 1258:Antibiotics 1227:Esperamicin 1222:Dynemicin A 625:(1): 9–15. 339:M. chersina 335:Dynemicin A 289:calichensis 74:antibiotics 67:double bond 1252:Categories 1191:Kedarcidin 469:2018-05-05 387:References 325:Dynemicins 188:polyketide 172:crosslinks 1268:Enediynes 1172:Enediynes 1131:0570-0833 956:0002-7863 167:diradical 82:apoptosis 55:Enediynes 836:11259839 801:10714984 752:18328078 698:18397168 649:25434000 597:20336235 557:21250756 365:See also 359:in vitro 135:cumulene 65:and one 1091:9208107 1056:2793600 1015:2813351 983:Bibcode 917:2722671 871:8180224 743:5591436 689:3108100 640:4480864 548:3064734 505:8667354 446:8327459 414:Bibcode 381:Polyyne 343:Gujarat 246:histone 210:Classes 123:epoxide 103:Bergman 1186:C-1027 1129:  1089:  1054:  1013:  1006:298132 1003:  954:  915:  869:  834:  799:  792:101862 789:  750:  740:  696:  686:  647:  637:  595:  555:  545:  503:  444:  434:  259:C-1027 253:C-1027 145:rings. 437:46830 376:Enyne 319:thiol 130:diene 86:cells 1127:ISSN 1087:PMID 1052:PMID 1011:PMID 952:ISSN 913:PMID 867:PMID 832:PMID 797:PMID 748:PMID 694:PMID 645:PMID 593:PMID 553:PMID 501:PMID 442:PMID 295:and 57:are 1119:doi 1079:doi 1042:doi 1001:PMC 991:doi 944:doi 940:109 903:doi 859:doi 824:doi 787:PMC 779:doi 775:182 738:PMC 730:doi 726:282 684:PMC 676:doi 635:PMC 627:doi 585:doi 543:PMC 535:doi 493:doi 432:PMC 422:doi 84:in 1254:: 1125:. 1115:29 1113:. 1099:^ 1085:. 1073:. 1050:. 1038:42 1036:. 1032:. 1009:. 999:. 989:. 979:86 977:. 973:. 950:. 938:. 925:^ 911:. 899:42 897:. 893:. 879:^ 865:. 855:33 853:. 830:. 820:46 818:. 795:. 785:. 773:. 769:. 746:. 736:. 724:. 720:. 706:^ 692:. 682:. 670:. 666:. 643:. 633:. 623:25 621:. 617:. 605:^ 591:. 581:27 579:. 565:^ 551:. 541:. 531:74 529:. 525:. 513:^ 499:. 489:39 487:. 462:. 440:. 430:. 420:. 410:90 408:. 404:. 333:. 202:. 69:. 1164:e 1157:t 1150:v 1133:. 1121:: 1093:. 1081:: 1075:5 1058:. 1044:: 1017:. 993:: 985:: 958:. 946:: 919:. 905:: 873:. 861:: 838:. 826:: 803:. 781:: 754:. 732:: 700:. 678:: 672:8 651:. 629:: 599:. 587:: 559:. 537:: 507:. 495:: 472:. 448:. 424:: 416:: 176:2

Index



Calicheamicin
organic compounds
triple bonds
double bond
antibiotics
anticancer antibiotics
apoptosis
cells
cancerous cells
Bergman

epoxide
diene
cumulene


diradical
crosslinks
polyketide
gene clusters
chromophores
chromoproteins
Neocarzinostatin
histone
C-1027
Streptomyces globisporus
Qian-Jiang District
Micromonospora echinospora

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