Knowledge (XXG)

D-alanine—D-alanine ligase

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1499: 383: 242: 575: 495: 341: 193: 901: 212: 966: 1556: 1158: 1106: 443: 289: 1072: 1580: 736:"The molecular basis of vancomycin resistance in clinically relevant Enterococci: crystal structure of D-alanyl-D-lactate ligase (VanA)" 894: 1218: 1173: 799:"Enzymatic synthesis of the peptide in bacterial uridine nucleotides II. Enzymatic synthesis and addition of D-alanyl-D-alanine" 205: 1178: 1168: 1062: 132: 1374: 1185: 1011: 515: 361: 156: 1549: 887: 1489: 714: 710: 706: 702: 698: 694: 690: 686: 1031: 1006: 991: 951: 1153: 1148: 1121: 640: 1359: 1067: 1026: 986: 976: 971: 956: 1475: 1462: 1449: 1436: 1423: 1410: 1397: 1143: 1082: 1053: 936: 927: 1369: 1036: 961: 946: 1542: 1323: 1266: 918: 582: 536: 150: 43: 1016: 996: 981: 941: 503: 349: 1271: 137: 1041: 1021: 1001: 1133: 586: 837:
van Heijenoort J (2001). "Recent advances in the formation of the bacterial peptidoglycan monomer unit".
619:, specifically those forming carbon-nitrogen bonds as acid-D-amino-acid ligases (peptide synthases). The 560: 1585: 1292: 1211: 1163: 606: 598: 217: 1364: 499: 345: 125: 1091: 747: 636: 456: 302: 60: 1328: 662: 594: 55: 153: 1261: 678: 77: 1575: 854: 775: 682: 551: 490: 336: 144: 1526: 879: 1307: 1302: 1276: 1204: 1096: 846: 810: 765: 755: 659: 652: 482: 328: 1354: 1338: 1251: 620: 113: 17: 751: 89: 1503: 1392: 1333: 1138: 539: 188: 48: 815: 798: 168: 1569: 1297: 1256: 770: 735: 658:
The N-terminal region of the D-alanine—D-alanine ligase is thought to be involved in
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complex of y216f d-ala:d-ala ligase with adp and a phosphoryl phosphinate
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complex of y216f d-ala:d-ala ligase with adp and a phosphoryl phosphinate
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Neuhaus FC (1962). "Kinetic studies on D-Ala-D-Ala synthetase".
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This article incorporates text from the public domain
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Roper DI, Huyton T, Vagin A, Dodson G (August 2000).
563: 1383: 1347: 1316: 1285: 1234: 1081: 1052: 926: 509: 489: 471: 466: 442: 430: 417: 405: 397: 392: 375: 355: 335: 317: 312: 288: 276: 264: 256: 251: 231: 211: 199: 187: 182: 162: 143: 131: 119: 107: 95: 83: 71: 66: 54: 42: 37: 32: 569: 681:have been solved for this class of enzymes, with 1550: 1212: 895: 8: 1557: 1543: 1219: 1205: 1197: 902: 888: 880: 665:, while the C-terminus is thought to be a 463: 381: 309: 240: 179: 814: 769: 759: 562: 625:D-alanine:D-alanine ligase (ADP-forming) 1494: 726: 372: 228: 29: 967:D-alanine—poly(phosphoribitol) ligase 612:This enzyme belongs to the family of 27:Enzyme belonging to the ligase family 7: 1515: 1513: 629:alanine:alanine ligase (ADP-forming) 627:. Other names in common use include 577:ADP + phosphate + D-alanyl-D-alanine 570:{\displaystyle \rightleftharpoons } 1529:. You can help Knowledge (XXG) by 1107:Von Hippel–Lindau tumor suppressor 25: 1497: 1073:Long-chain-fatty-acid—CoA ligase 1169:Carbamoyl phosphate synthetase 1063:Succinyl coenzyme A synthetase 797:Ito, E; Strominger JL (1962). 635:. This enzyme participates in 1: 816:10.1016/S0021-9258(19)73809-5 467:Available protein structures: 376:D-ala D-ala ligase C-terminus 313:Available protein structures: 740:Proc. Natl. Acad. Sci. U.S.A 1602: 1581:Enzymes of known structure 1512: 1154:Holocarboxylase synthetase 1149:Argininosuccinate synthase 1122:Anaphase-promoting complex 865: 641:peptidoglycan biosynthesis 533:D-alanine—D-alanine ligase 33:D-Alanine—D-alanine ligase 18:D-alanine-D-alanine ligase 1375:Michaelis–Menten kinetics 1186:Glutamate–cysteine ligase 1144:Adenylosuccinate synthase 937:Aminoacyl tRNA synthetase 462: 380: 308: 239: 178: 1267:Diffusion-limited enzyme 633:alanylalanine synthetase 623:of this enzyme class is 1525:-related article is a 1134:Glutathione synthetase 761:10.1073/pnas.150116497 571: 1360:Eadie–Hofstee diagram 1293:Allosteric regulation 1164:Asparagine synthetase 1068:Acetyl—CoA synthetase 572: 1370:Lineweaver–Burk plot 1092:Glutamine synthetase 637:d-alanine metabolism 561: 752:2000PNAS...97.8921R 677:As of late 2007, 8 653:inhibit this enzyme 585:of this enzyme are 232:D-ala D-ala ligase 1329:Enzyme superfamily 1262:Enzyme promiscuity 673:Structural studies 607:D-alanyl-D-alanine 567: 557:ATP + 2 D-alanine 1538: 1537: 1485: 1484: 1194: 1193: 1085:: Carbon-Nitrogen 552:chemical reaction 525: 524: 521: 520: 516:structure summary 371: 370: 367: 366: 362:structure summary 227: 226: 223: 222: 126:metabolic pathway 16:(Redirected from 1593: 1559: 1552: 1545: 1514: 1502: 1501: 1493: 1365:Hanes–Woolf plot 1308:Enzyme activator 1303:Enzyme inhibitor 1277:Enzyme catalysis 1221: 1214: 1207: 1198: 1097:Ubiquitin ligase 904: 897: 890: 881: 862: 851:10.1039/a804532a 833: 820: 818: 784: 783: 773: 763: 731: 685:accession codes 593:, whereas its 3 576: 574: 573: 568: 464: 385: 373: 310: 244: 229: 180: 30: 21: 1601: 1600: 1596: 1595: 1594: 1592: 1591: 1590: 1566: 1565: 1564: 1563: 1510: 1508: 1496: 1488: 1486: 1481: 1393:Oxidoreductases 1379: 1355:Enzyme kinetics 1343: 1339:List of enzymes 1312: 1281: 1252:Catalytic triad 1230: 1225: 1195: 1190: 1077: 1056:: Carbon-Sulfur 1048: 930:: Carbon-Oxygen 922: 913:: CO CS and CN 908: 878: 836: 823: 796: 793: 791:Further reading 788: 787: 733: 732: 728: 723: 675: 621:systematic name 559: 558: 401:Dala_Dala_lig_C 388: 260:Dala_Dala_lig_N 247: 28: 23: 22: 15: 12: 11: 5: 1599: 1597: 1589: 1588: 1583: 1578: 1568: 1567: 1562: 1561: 1554: 1547: 1539: 1536: 1535: 1507: 1506: 1483: 1482: 1480: 1479: 1466: 1453: 1440: 1427: 1414: 1401: 1387: 1385: 1381: 1380: 1378: 1377: 1372: 1367: 1362: 1357: 1351: 1349: 1345: 1344: 1342: 1341: 1336: 1331: 1326: 1320: 1318: 1317:Classification 1314: 1313: 1311: 1310: 1305: 1300: 1295: 1289: 1287: 1283: 1282: 1280: 1279: 1274: 1269: 1264: 1259: 1254: 1249: 1244: 1238: 1236: 1232: 1231: 1226: 1224: 1223: 1216: 1209: 1201: 1192: 1191: 1189: 1188: 1183: 1182: 1181: 1176: 1166: 1161: 1156: 1151: 1146: 1141: 1139:CTP synthetase 1136: 1131: 1130: 1129: 1124: 1119: 1114: 1109: 1104: 1094: 1088: 1086: 1079: 1078: 1076: 1075: 1070: 1065: 1059: 1057: 1050: 1049: 1047: 1046: 1045: 1044: 1039: 1034: 1029: 1024: 1019: 1014: 1009: 1004: 999: 994: 989: 984: 979: 974: 969: 964: 959: 954: 949: 944: 933: 931: 924: 923: 909: 907: 906: 899: 892: 884: 864: 863: 839:Nat. Prod. Rep 834: 821: 792: 789: 786: 785: 746:(16): 8921–5. 725: 724: 722: 719: 674: 671: 581:Thus, the two 579: 578: 566: 523: 522: 519: 518: 513: 507: 506: 493: 487: 486: 476: 469: 468: 460: 459: 446: 440: 439: 434: 428: 427: 422: 415: 414: 409: 403: 402: 399: 395: 394: 390: 389: 386: 378: 377: 369: 368: 365: 364: 359: 353: 352: 339: 333: 332: 322: 315: 314: 306: 305: 292: 286: 285: 280: 274: 273: 268: 262: 261: 258: 254: 253: 249: 248: 245: 237: 236: 225: 224: 221: 220: 215: 209: 208: 203: 197: 196: 191: 185: 184: 176: 175: 166: 160: 159: 148: 141: 140: 135: 129: 128: 123: 117: 116: 111: 105: 104: 99: 93: 92: 87: 81: 80: 75: 69: 68: 64: 63: 58: 52: 51: 46: 40: 39: 35: 34: 26: 24: 14: 13: 10: 9: 6: 4: 3: 2: 1598: 1587: 1584: 1582: 1579: 1577: 1574: 1573: 1571: 1560: 1555: 1553: 1548: 1546: 1541: 1540: 1534: 1532: 1528: 1524: 1521: 1516: 1511: 1505: 1500: 1495: 1491: 1477: 1473: 1472: 1467: 1464: 1460: 1459: 1454: 1451: 1447: 1446: 1441: 1438: 1434: 1433: 1428: 1425: 1421: 1420: 1415: 1412: 1408: 1407: 1402: 1399: 1395: 1394: 1389: 1388: 1386: 1382: 1376: 1373: 1371: 1368: 1366: 1363: 1361: 1358: 1356: 1353: 1352: 1350: 1346: 1340: 1337: 1335: 1334:Enzyme family 1332: 1330: 1327: 1325: 1322: 1321: 1319: 1315: 1309: 1306: 1304: 1301: 1299: 1298:Cooperativity 1296: 1294: 1291: 1290: 1288: 1284: 1278: 1275: 1273: 1270: 1268: 1265: 1263: 1260: 1258: 1257:Oxyanion hole 1255: 1253: 1250: 1248: 1245: 1243: 1240: 1239: 1237: 1233: 1229: 1222: 1217: 1215: 1210: 1208: 1203: 1202: 1199: 1187: 1184: 1180: 1177: 1175: 1172: 1171: 1170: 1167: 1165: 1162: 1160: 1157: 1155: 1152: 1150: 1147: 1145: 1142: 1140: 1137: 1135: 1132: 1128: 1125: 1123: 1120: 1118: 1115: 1113: 1110: 1108: 1105: 1103: 1100: 1099: 1098: 1095: 1093: 1090: 1089: 1087: 1084: 1080: 1074: 1071: 1069: 1066: 1064: 1061: 1060: 1058: 1055: 1051: 1043: 1040: 1038: 1035: 1033: 1030: 1028: 1025: 1023: 1020: 1018: 1015: 1013: 1012:Phenylalanine 1010: 1008: 1005: 1003: 1000: 998: 995: 993: 990: 988: 985: 983: 980: 978: 975: 973: 970: 968: 965: 963: 960: 958: 955: 953: 950: 948: 945: 943: 940: 939: 938: 935: 934: 932: 929: 925: 920: 916: 912: 905: 900: 898: 893: 891: 886: 885: 882: 877: 873: 869: 860: 856: 852: 848: 845:(5): 503–19. 844: 840: 835: 831: 827: 822: 817: 812: 809:: 2696–2703. 808: 804: 803:J. Biol. Chem 800: 795: 794: 790: 781: 777: 772: 767: 762: 757: 753: 749: 745: 741: 737: 730: 727: 720: 718: 716: 712: 708: 704: 700: 696: 692: 688: 684: 680: 672: 670: 668: 664: 661: 656: 654: 651:are known to 650: 649:D-cycloserine 646: 642: 638: 634: 630: 626: 622: 618: 615: 610: 608: 604: 600: 596: 592: 588: 584: 556: 555: 554: 553: 549: 545: 541: 538: 534: 530: 517: 514: 512: 508: 505: 501: 497: 494: 492: 488: 484: 480: 477: 474: 470: 465: 461: 458: 454: 450: 447: 445: 441: 438: 435: 433: 429: 426: 423: 420: 416: 413: 410: 408: 404: 400: 396: 391: 384: 379: 374: 363: 360: 358: 354: 351: 347: 343: 340: 338: 334: 330: 326: 323: 320: 316: 311: 307: 304: 300: 296: 293: 291: 287: 284: 281: 279: 275: 272: 269: 267: 263: 259: 255: 250: 243: 238: 235: 230: 219: 216: 214: 210: 207: 204: 202: 198: 195: 192: 190: 186: 181: 177: 174: 170: 167: 165: 164:Gene Ontology 161: 158: 155: 152: 149: 146: 142: 139: 136: 134: 130: 127: 124: 122: 118: 115: 112: 110: 106: 103: 102:NiceZyme view 100: 98: 94: 91: 88: 86: 82: 79: 76: 74: 70: 65: 62: 59: 57: 53: 50: 47: 45: 41: 36: 31: 19: 1586:Ligase stubs 1531:expanding it 1517: 1509: 1471:Translocases 1468: 1455: 1442: 1429: 1416: 1406:Transferases 1403: 1390: 1247:Binding site 1159:GMP synthase 842: 838: 829: 825: 806: 802: 743: 739: 729: 676: 657: 632: 628: 624: 611: 580: 532: 526: 90:BRENDA entry 1242:Active site 645:Phosphinate 393:Identifiers 252:Identifiers 78:IntEnz view 38:Identifiers 1570:Categories 1445:Isomerases 1419:Hydrolases 1286:Regulation 1032:Tryptophan 1007:Methionine 992:Isoleucine 952:Asparagine 721:References 679:structures 583:substrates 529:enzymology 479:structures 325:structures 234:N-terminus 147:structures 114:KEGG entry 61:9023-63-6 1324:EC number 1027:Threonine 987:Histidine 977:Glutamine 972:Glutamate 957:Aspartate 876:IPR011127 826:Fed. Proc 667:catalytic 660:substrate 614:ATP-grasp 603:phosphate 591:D-alanine 565:⇌ 548:catalyzes 437:IPR011095 283:IPR011127 67:Databases 1576:EC 6.3.2 1348:Kinetics 1272:Cofactor 1235:Activity 1037:Tyrosine 962:Cysteine 947:Arginine 921:6.1-6.3) 872:InterPro 859:11699883 780:10908650 669:domain. 595:products 542:) is an 496:RCSB PDB 432:InterPro 342:RCSB PDB 278:InterPro 218:proteins 206:articles 194:articles 151:RCSB PDB 1504:Biology 1458:Ligases 1228:Enzymes 1017:Proline 997:Leucine 982:Glycine 942:Alanine 915:ligases 911:Enzymes 748:Bibcode 663:binding 617:ligases 540:6.3.2.4 412:PF07478 271:PF01820 173:QuickGO 138:profile 121:MetaCyc 56:CAS no. 49:6.3.2.4 1523:enzyme 1520:EC 6.3 1490:Portal 1432:Lyases 1102:Cullin 1042:Valine 1022:Serine 1002:Lysine 857:  832:: 229. 778:  768:  713:, and 631:, and 605:, and 544:enzyme 511:PDBsum 485:  475:  457:SUPFAM 425:CL0179 398:Symbol 357:PDBsum 331:  321:  303:SUPFAM 257:Symbol 201:PubMed 183:Search 169:AmiGO 157:PDBsum 97:ExPASy 85:BRENDA 73:IntEnz 44:EC no. 1518:This 1384:Types 1112:UBE3A 771:16797 546:that 453:SCOPe 444:SCOP2 299:SCOPe 290:SCOP2 133:PRIAM 1527:stub 1476:list 1469:EC7 1463:list 1456:EC6 1450:list 1443:EC5 1437:list 1430:EC4 1424:list 1417:EC3 1411:list 1404:EC2 1398:list 1391:EC1 1127:UBR1 1117:Mdm2 870:and 868:Pfam 855:PMID 776:PMID 715:2I8C 711:2I87 707:2I80 703:2FB9 699:2DLN 695:1IOW 691:1IOV 687:1EHI 647:and 639:and 597:are 589:and 550:the 531:, a 504:PDBj 500:PDBe 483:ECOD 473:Pfam 449:2dln 421:clan 419:Pfam 407:Pfam 350:PDBj 346:PDBe 329:ECOD 319:Pfam 295:2dln 266:Pfam 213:NCBI 154:PDBe 109:KEGG 1083:6.3 1054:6.2 928:6.1 847:doi 811:doi 807:237 766:PMC 756:doi 683:PDB 599:ADP 587:ATP 527:In 491:PDB 337:PDB 189:PMC 145:PDB 1572:: 1179:II 919:EC 874:: 853:. 843:18 841:. 830:21 828:. 805:. 801:. 774:. 764:. 754:. 744:97 742:. 738:. 717:. 709:, 705:, 701:, 697:, 693:, 689:, 655:. 643:. 609:. 601:, 537:EC 502:; 498:; 481:/ 455:/ 451:/ 348:; 344:; 327:/ 301:/ 297:/ 171:/ 1558:e 1551:t 1544:v 1533:. 1492:: 1478:) 1474:( 1465:) 1461:( 1452:) 1448:( 1439:) 1435:( 1426:) 1422:( 1413:) 1409:( 1400:) 1396:( 1220:e 1213:t 1206:v 1174:I 917:( 903:e 896:t 889:v 861:. 849:: 819:. 813:: 782:. 758:: 750:: 535:( 20:)

Index

D-alanine-D-alanine ligase
EC no.
6.3.2.4
CAS no.
9023-63-6
IntEnz
IntEnz view
BRENDA
BRENDA entry
ExPASy
NiceZyme view
KEGG
KEGG entry
MetaCyc
metabolic pathway
PRIAM
profile
PDB
RCSB PDB
PDBe
PDBsum
Gene Ontology
AmiGO
QuickGO
PMC
articles
PubMed
articles
NCBI
proteins

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