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Deletion (genetics)

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strategy for the detection of DNA copy-number changes on a genome-wide scale. The resolution of detection could be as high as >30,000 "bands" and the size of chromosomal deletion detected could as small as 5–20 kb in length. Other computation methods were selected to discover DNA sequencing deletion errors such as
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The introduction of molecular techniques in conjunction with classical cytogenetic methods has in recent years greatly improved the diagnostic potential for chromosomal abnormalities. In particular, microarray-comparative genomic hybridization (CGH) based on the use of BAC clones promises a sensitive
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Microdeletions are associated with many different conditions, including Angelman Syndrome, Prader-Willi Syndrome, and DiGeorge Syndrome. Some syndromes, including Angelman syndrome and Prader-Willi syndrome, are associated with both microdeletions and genomic imprinting, meaning that same
443:. Loss of these proteins decreases the rate of spontaneous DNA deletion events in mitochondria. This finding implies that the repair of DNA double-strand breaks by homologous recombination is a step in the formation of mitochondrial DNA deletions. 365:
Recent work suggests that some deletions of highly conserved sequences (CONDELs) may be responsible for the evolutionary differences present among closely related species. Such deletions in humans, referred to as
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Ivanetich, K. M.; Lucas, S.; Marsh, J. A.; Ziman, M. R.; Katz, I. D.; Bradshaw, J. J. (1978). "Organic compounds. Their interaction with and degradation of hepatic microsomal drug-metabolizing enzymes in vitro".
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Small deletions are less likely to be fatal; large deletions are usually fatal – there are always variations based on which genes are lost. Some medium-sized deletions lead to recognizable human disorders, e.g.
287:, which includes band names, symbols and abbreviated terms used in the description of human chromosome and chromosome abnormalities. Abbreviations include a minus sign (−) for chromosome deletions, and 1493: 1151:
Volik, S.; Zhao, S.; Chin, K.; Brebner, J. H.; Herndon, D. R.; Tao, Q.; Kowbel, D.; Huang, G.; Lapuk, A.; Kuo, W.-L.; Magrane, G.; de Jong, P.; Gray, J. W.; Collins, C. (4 June 2003).
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to occur between a chromosome with a large intercalary deficiency and a normal complete homolog, the unpaired region of the normal homolog must loop out of the linear structure into a
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McLean CY, Reno PL, Pollen AA, Bassan AI, Capellini TD, Guenther C, Indjeian VB, Lim X, Menke DB, Schaar BT, Wenger AM, Bejerano G, Kingsley DM (March 2011).
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Micro-deletion is usually found in children with physical abnormalities. A large amount of deletion would result in immediate abortion (miscarriage).
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with annotated bands and sub-bands as used for the nomenclature of chromosome abnormalities. It shows dark and white regions as seen on
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Banavali, Nilesh K. (2013). "Analyzing the Relationship between Single Base Flipping and Strand Slippage near DNA Duplex Termini".
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breaks, if a part of it is deleted or lost, the missing piece of chromosome is referred to as a deletion or a deficiency.
1622: 663:"Cytosine Unstacking and Strand Slippage at an Insertion–Deletion Mutation Sequence in an Overhang-Containing DNA Duplex" 2042: 2034: 1990: 1682: 1557: 1535: 263: 2233: 2221: 1601: 1488: 335: 1678: 1674: 1980: 1418: 1743: 1048:"BAC-based PCR fragment microarray: high-resolution detection of chromosomal deletion and duplication breakpoints" 90:
of a part of the chromosome. The breaks can be induced by heat, viruses, radiation, or chemical reactions. When a
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Banavali, Nilesh K. (2013). "Partial Base Flipping is Sufficient for Strand Slippage near DNA Duplex Termini".
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by changing the 3-nucleotide protein reading frame of the genetic sequence. Deletions are representative of
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Mitchell, Richard Sheppard; Kumar, Vinay; Robbins, Stanley L.; Abbas, Abul K.; Fausto, Nelson (2007).
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in the template DNA, followed by template DNA strand slippage, within the DNA polymerase active site.
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cohorts revealed that there are on average 12 driver events per tumor, of which 2.1 are deletions of
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Vyatkin, Alexey D.; Otnyukov, Danila V.; Leonov, Sergey V.; Belikov, Aleksey V. (14 January 2022).
548:. Michael R. Cummings, Charlotte A. Spencer, Michael Angelo Palladino (Eleventh ed.). Boston. 308: 132: 362:
microdeletion can cause two different syndromes depending on which parent the deletion came from.
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encode proteins that are necessary for recombinational repair and are employed in the repair of
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Rosenberg's Molecular and Genetic Basis of Neurological and Psychiatric Disease (Fifth Edition)
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Srour, Myriam; Shevell, Michael (2015-01-01), Rosenberg, Roger N.; Pascual, Juan M. (eds.),
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Deletions are responsible for an array of genetic disorders, including some cases of male
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Recent comprehensive patient-level classification and quantification of driver events in
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an arbitrary karyotype that involves a variety of autosomal and allosomal abnormalities.
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Three chromosomal abnormalities with ISCN nomenclature, with increasing complexity:
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Deletion of a number of pairs that is not evenly divisible by three will lead to a
284: 940:"Human-specific loss of regulatory DNA and the evolution of human-specific traits" 1013: 1894: 1865: 1860: 1757: 1097:"Using a VOM Model for Reconstructing Potential Coding Regions in EST Sequences" 462: 347: 331: 140: 75: 17: 1127: 2014: 2010: 1816: 1562: 1540: 1530: 1115: 898: 766: 248: 136: 91: 83: 79: 67: 906: 563: 1855: 1811: 1503: 1498: 1177: 269: 255: 244: 240: 1429: 1196: 1073: 1032: 981: 924: 745: 696: 647: 612: 543: 1971: 1921: 1917: 1789: 1468: 1408: 1398: 1393: 1268: 367: 343: 323:. In contrast, a deletion that is evenly divisible by three is called an 258:
chromosome pairs, both the female (XX) and male (XY) versions of the two
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Drug Metabolism and Disposition: The Biological Fate of Chemicals
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Manjari, Swati R.; Pata, Janice D.; Banavali, Nilesh K. (2014).
346:). Deletion of part of the short arm of chromosome 5 results in 227:
Prader–Willi Syndrome i.e. deletion in the 15q11-q12 region and
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The smallest single base deletion mutations occur by a single
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A tumour karyotype in a male with loss of the Y chromosome,
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occurring after the deletion to be read incorrectly during
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have fragile spots where breaks occur, which result in the
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Kalsner, Louisa; Chamberlain, Stormy J. (April 22, 2015).
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at The GEN2PHEN Knowledge Centre. Posted Fri, 08/01/2010.
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International System for Human Cytogenomic Nomenclature
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Any number of 358:, the most common genetic cause of infant death. 1157:Proceedings of the National Academy of Sciences 27:Mutation that removes a part of a DNA sequence 2199:46,XX testicular disorders of sex development 1445: 1253: 8: 1208: 1206: 855:, Boston: Academic Press, pp. 151–161, 758:: CS1 maint: multiple names: authors list ( 66:(a genetic aberration) in which a part of a 2021:Acute myeloblastic leukemia with maturation 767:http://creativecommons.org/licenses/by/4.0/ 1926: 1913: 1785: 1473: 1452: 1438: 1430: 1315: 1260: 1246: 1238: 576:: CS1 maint: location missing publisher ( 1186: 1176: 1063: 1022: 1012: 971: 914: 735: 710:Warrender JD, Moorman AV, Lord P (2019). 686: 519:Human Genetics: Concepts and Applications 184:Types of deletion include the following: 1387:Mutation with respect to overall fitness 593:Journal of the American Chemical Society 291:for deletions of parts of a chromosome. 280:(ISCN) is an international standard for 234: 214: 512: 510: 508: 504: 139:organisms, including humans and not in 82:to an entire piece of chromosome. Some 784:Coriell Institute for Medical Research 751: 569: 119:Deletions can be caused by errors in 7: 1095:Shmilovici, A.; Ben-Gal, I. (2007). 780:"ISCN Symbols and Abbreviated Terms" 374:and other varieties of mammals like 247:. Each row is vertically aligned at 2265:Modification of genetic information 2134:Desmoplastic small-round-cell tumor 1104:Journal of Computational Statistics 628:The Journal of Physical Chemistry B 1312:Mutation with respect to structure 887:Pediatric Clinics of North America 803:LSDB — Controlled vocabulary terms 25: 195:Intercalary/interstitial deletion 1707:22q11.2 distal deletion syndrome 2106:Dermatofibrosarcoma protuberans 2049:Acute megakaryoblastic leukemia 1977:Anaplastic large-cell lymphoma 1639:Chromosome 5q deletion syndrome 127:, which causes several serious 151:Causes include the following: 78:can be deleted, from a single 1: 1829:Klinefelter syndrome (47,XXY) 1594:1q21.1 copy number variations 728:10.1093/bioinformatics/btz440 521:(6th ed.). McGraw Hill. 483:Chromosomal deletion syndrome 338:, and two thirds of cases of 143:organisms, such as bacteria. 2035:Acute promyelocytic leukemia 1991:Acute lymphoblastic leukemia 1683:17q12 microdeletion syndrome 1558:22q11.2 duplication syndrome 1536:16p11.2 duplication syndrome 1014:10.1371/journal.pgen.1009996 1602:1q21.1 duplication syndrome 1489:1q21.1 duplication syndrome 409:Mitochondrial DNA deletions 350:syndrome. Deletions in the 336:Duchenne muscular dystrophy 2286: 1369:Chromosomal translocations 267: 175:Breaking without rejoining 2148:Alveolar rhabdomyosarcoma 1883:XYYYY syndrome (49,XYYYY) 1849:XXXXY syndrome (49,XXXXY) 1844:XXXYY syndrome (49,XXXYY) 1116:10.1007/s00180-007-0021-8 899:10.1016/j.pcl.2015.03.004 542:Klug, William S. (2015). 468:List of genetic disorders 334:, two thirds of cases of 1623:Wolf–Hirschhorn syndrome 1598:1q21.1 deletion syndrome 1461:Chromosome abnormalities 458:Chromosome abnormalities 416:Saccharomyces cerevisiae 34:Deletion on a chromosome 2007:Philadelphia chromosome 1878:XYYY syndrome (48,XYYY) 1839:XXXY syndrome (48,XXXY) 1834:XXYY syndrome (48,XXYY) 1719:22q13 deletion syndrome 1494:2q31.1 microduplication 1409:Nearly neutral mutation 1178:10.1073/pnas.1232418100 824:Robbins basic pathology 356:spinal muscular atrophy 1866:Pentasomy X (49,XXXXX) 1798:Turner syndrome (45,X) 1679:Smith–Magenis syndrome 1675:Miller–Dieker syndrome 1610:1p36 deletion syndrome 1419:Nonsynonymous mutation 1374:Chromosomal inversions 1276:Mechanisms of mutation 478:Microdeletion syndrome 403:end-sequence profiling 273: 232: 162:Chromosomal crossovers 35: 1873:XYY syndrome (47,XYY) 1861:Tetrasomy X (48,XXXX) 1744:Prader–Willi syndrome 1399:Advantageous mutation 1338:Conservative mutation 826:. Saunders/Elsevier. 354:-encoding gene cause 311:, causing all of the 268:Further information: 238: 218: 171:Unequal crossing over 166:chromosomal inversion 121:chromosomal crossover 33: 1965:Mantle cell lymphoma 1635:Cri du chat syndrome 1394:Deleterious mutation 1362:Large-scale mutation 545:Concepts of genetics 488:Insertion (genetics) 437:double strand breaks 419:, the nuclear genes 264:mitochondrial genome 1951:Follicular lymphoma 1414:Synonymous mutation 1348:Frameshift mutation 1169:2003PNAS..100.7696V 1046:Ren, H (May 2005). 964:10.1038/nature09774 956:2011Natur.471..216M 634:(46): 14320–14328. 309:frameshift mutation 251:level. It shows 22 2190:Uniparental disomy 2185:Fragile X syndrome 2120:Myxoid liposarcoma 1972:t(11 CCND1:14 IGH) 1856:Trisomy X (47,XXX) 1734:genomic imprinting 1514:Distal trisomy 10q 1065:10.1002/humu.20164 808:2011-10-06 at the 517:Lewis, R. (2004). 274: 266:(at bottom left). 233: 36: 2252: 2251: 2204:Marker chromosome 2173: 2172: 2066: 2065: 1903: 1902: 1770: 1769: 1740:Angelman syndrome 1695:DiGeorge syndrome 1663:Jacobsen syndrome 1651:Williams syndrome 1427: 1426: 1382: 1381: 1333:Missense mutation 1328:Nonsense mutation 1163:(13): 7696–7701. 862:978-0-12-410529-4 833:978-1-4160-2973-1 722:(24): 5264–5270. 679:10.1021/bi500189g 673:(23): 3807–3816. 640:10.1021/jp408957c 605:10.1021/ja401573j 599:(22): 8274–8282. 555:978-0-321-94891-5 441:mitochondrial DNA 390:tumor suppressors 342:(those caused by 302:Williams syndrome 262:, as well as the 189:Terminal deletion 107:compensation loop 70:or a sequence of 56:deletion mutation 16:(Redirected from 2277: 2195:XX male syndrome 2092:Synovial sarcoma 1969:Multiple myeloma 1937:Burkitt lymphoma 1927: 1914: 1817:other karyotypes 1786: 1568:Cat-eye syndrome 1474: 1454: 1447: 1440: 1431: 1404:Neutral mutation 1353:Dynamic mutation 1316: 1262: 1255: 1248: 1239: 1232: 1231: 1210: 1201: 1200: 1190: 1180: 1148: 1142: 1141: 1139: 1138: 1132: 1126:. Archived from 1101: 1092: 1086: 1085: 1067: 1043: 1037: 1036: 1026: 1016: 992: 986: 985: 975: 935: 929: 928: 918: 878: 872: 871: 870: 869: 844: 838: 837: 819: 813: 800: 794: 793: 791: 790: 776: 770: 763: 757: 749: 739: 707: 701: 700: 690: 658: 652: 651: 623: 617: 616: 588: 582: 581: 575: 567: 539: 533: 532: 514: 473:Medical genetics 282:human chromosome 129:genetic diseases 21: 18:Genetic deletion 2285: 2284: 2280: 2279: 2278: 2276: 2275: 2274: 2255: 2254: 2253: 2248: 2209:Ring chromosome 2169: 2062: 1995: 1899: 1815: 1802: 1766: 1579: 1478: 1463: 1458: 1428: 1423: 1378: 1357: 1343:Silent mutation 1307: 1271: 1266: 1236: 1235: 1212: 1211: 1204: 1150: 1149: 1145: 1136: 1134: 1130: 1099: 1094: 1093: 1089: 1045: 1044: 1040: 1007:(1): e1009996. 994: 993: 989: 950:(7337): 216–9. 937: 936: 932: 880: 879: 875: 867: 865: 863: 846: 845: 841: 834: 821: 820: 816: 810:Wayback Machine 801: 797: 788: 786: 778: 777: 773: 764: 750: 709: 708: 704: 660: 659: 655: 625: 624: 620: 590: 589: 585: 568: 556: 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1528: 1527: 1526: 1519:Patau syndrome 1516: 1511: 1506: 1501: 1496: 1491: 1485: 1483: 1471: 1465: 1464: 1459: 1457: 1456: 1449: 1442: 1434: 1425: 1424: 1422: 1421: 1416: 1411: 1406: 1401: 1396: 1390: 1388: 1384: 1383: 1380: 1379: 1377: 1376: 1371: 1365: 1363: 1359: 1358: 1356: 1355: 1350: 1345: 1340: 1335: 1330: 1324: 1322: 1320:Point mutation 1313: 1309: 1308: 1306: 1305: 1304: 1303: 1298: 1290: 1285: 1279: 1277: 1273: 1272: 1267: 1265: 1264: 1257: 1250: 1242: 1234: 1233: 1222:(3): 218–225. 1202: 1143: 1087: 1058:(5): 476–482. 1052:Human Mutation 1038: 987: 930: 893:(3): 587–606. 873: 861: 839: 832: 814: 795: 771: 716:Bioinformatics 702: 653: 618: 583: 554: 534: 528:978-0072951745 527: 503: 502: 500: 497: 496: 495: 493:10q26 deletion 490: 485: 480: 475: 470: 465: 460: 455: 448: 445: 410: 407: 397: 394: 296: 293: 212: 209: 205: 204: 198: 192: 181: 178: 177: 176: 173: 168: 159: 148: 145: 26: 24: 14: 13: 10: 9: 6: 4: 3: 2: 2282: 2271: 2268: 2266: 2263: 2262: 2260: 2243: 2239: 2235: 2231: 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456: 454: 451: 450: 446: 444: 442: 438: 434: 430: 429: 424: 423: 418: 417: 413:In the yeast 408: 406: 404: 395: 393: 391: 387: 382: 381: 377: 373: 369: 363: 359: 357: 353: 349: 345: 341: 337: 333: 328: 326: 322: 318: 314: 310: 305: 303: 294: 292: 290: 286: 283: 279: 271: 265: 261: 257: 254: 250: 246: 242: 237: 230: 226: 222: 217: 210: 208: 202: 201:Microdeletion 199: 196: 193: 190: 187: 186: 185: 179: 174: 172: 169: 167: 163: 160: 158: 157:translocation 154: 153: 152: 146: 144: 142: 138: 134: 130: 126: 122: 117: 115: 114:base flipping 110: 108: 104: 100: 95: 93: 89: 85: 81: 77: 73: 69: 65: 61: 57: 53: 49: 48:gene deletion 46:(also called 45: 41: 32: 19: 1732: 1606:TAR syndrome 1584: 1509:Tetrasomy 9p 1296:Transversion 1287: 1219: 1215: 1160: 1156: 1146: 1135:. Retrieved 1128:the original 1110:(1): 49–69. 1107: 1103: 1090: 1055: 1051: 1041: 1004: 1000: 990: 947: 943: 933: 890: 886: 876: 866:, retrieved 852: 842: 823: 817: 798: 787:. Retrieved 783: 774: 754:cite journal 719: 715: 705: 670: 667:Biochemistry 666: 656: 631: 627: 621: 596: 592: 586: 544: 537: 518: 432: 426: 420: 414: 412: 399: 383: 364: 360: 329: 324: 306: 298: 288: 285:nomenclature 275: 228: 224: 220: 211:Nomenclature 206: 200: 194: 188: 183: 155:Losses from 150: 118: 111: 106: 102: 96: 87: 55: 51: 47: 43: 37: 1895:46,XX/46,XY 1812:tetrasomies 1758:Distal 18q- 463:Null allele 372:chimpanzees 348:Cri du chat 332:infertility 317:translation 141:prokaryotic 84:chromosomes 76:nucleotides 2259:Categories 1890:45,X/46,XY 1790:Monosomies 1563:Trisomy 22 1541:Trisomy 18 1531:Trisomy 16 1479:including 1301:Transition 1137:2014-01-10 868:2022-01-07 789:2022-10-27 499:References 327:deletion. 253:homologous 249:centromere 137:eukaryotic 133:frameshift 92:chromosome 68:chromosome 52:deficiency 1808:Trisomies 1585:Deletions 1504:Trisomy 9 1499:Trisomy 8 1481:trisomies 1469:Autosomal 1283:Insertion 907:0031-3955 572:cite book 564:880404074 396:Detection 270:Karyotype 256:autosomal 245:G banding 241:karyotype 164:within a 58:) (sign: 2270:Mutation 1930:Lymphoid 1922:lymphoma 1918:Leukemia 1288:Deletion 1269:Mutation 1197:12788976 1082:28030180 1074:15832308 1033:35030162 982:21390129 925:26022164 806:Archived 746:31228194 697:24854722 648:24206351 613:23692220 447:See also 380:monkeys. 368:hCONDELs 325:in-frame 103:deletion 99:synapsis 88:deletion 64:mutation 44:deletion 40:genetics 2158:) t (1 2025:RUNX1T1 2000:Myeloid 1821:mosaics 1165:Bibcode 1124:2737235 1024:8759692 973:3071156 952:Bibcode 916:4449422 737:6954653 688:4063443 321:protein 295:Effects 125:meiosis 123:during 62:) is a 2110:COL1A1 1782:linked 1226:  1195:  1188:164650 1185:  1122:  1080:  1072:  1031:  1021:  980:  970:  944:Nature 923:  913:  905:  859:  830:  744:  734:  695:  685:  646:  611:  562:  552:  525:  433:Rad59p 431:p and 313:codons 239:Human 147:Causes 2178:Other 2164:FOXO1 2162:; 13 2156:FOXO1 2154:; 13 2140:; 22 2136:t(11 2126:; 16 2124:DDIT3 2122:t(12 2114:PDGFB 2108:t(17 2084:; 22 2080:t(11 2071:Other 2053:RBM15 2037:t(15 2029:RUNX1 2013:; 22 1953:t(14 1228:26540 1131:(PDF) 1120:S2CID 1100:(PDF) 1078:S2CID 453:Indel 428:Rad52 422:Rad51 344:ΔF508 180:Types 54:, or 2160:PAX7 2152:PAX3 2150:t(2 2112:;22 2098:;18 2094:t(x 2082:FLI1 2057:MKL1 2055:;22 2051:t(1 2043:RARA 2041:,17 2027:;21 2023:t(8 2009:t(9 1985:NPM1 1979:t(2 1959:BCL2 1957:;18 1943:;14 1939:t(8 1224:PMID 1193:PMID 1070:PMID 1029:PMID 978:PMID 921:PMID 903:ISSN 857:ISBN 828:ISBN 760:link 742:PMID 693:PMID 644:PMID 609:PMID 578:link 560:OCLC 550:ISBN 523:ISBN 386:TCGA 276:The 97:For 80:base 42:, a 2142:EWS 2138:WT1 2128:FUS 2100:SSX 2096:SYT 2086:EWS 2039:PML 2015:BCR 2011:ABL 1983:;5 1981:ALK 1955:IGH 1945:IGH 1941:MYC 1183:PMC 1173:doi 1161:100 1112:doi 1060:doi 1019:PMC 1009:doi 968:PMC 960:doi 948:471 911:PMC 895:doi 732:PMC 724:doi 683:PMC 675:doi 636:doi 632:117 601:doi 597:135 439:in 425:p, 378:or 376:ape 352:SMN 289:del 229:(C) 225:(B) 221:(A) 105:or 72:DNA 38:In 2261:: 2242:22 2240:, 2238:21 2236:; 2234:20 2232:; 2230:18 2228:; 2226:15 2224:; 2222:14 2220:; 2216:; 1748:15 1724:22 1712:22 1700:22 1688:17 1668:11 1612:) 1573:22 1551:21 1524:13 1218:. 1205:^ 1191:. 1181:. 1171:. 1159:. 1155:. 1118:. 1108:22 1106:. 1102:. 1076:. 1068:. 1056:25 1054:. 1050:. 1027:. 1017:. 1005:18 1003:. 999:. 976:. 966:. 958:. 946:. 942:. 919:. 909:. 901:. 891:62 889:. 885:. 851:, 782:. 769:)" 756:}} 752:{{ 740:. 730:. 720:35 718:. 714:. 691:. 681:. 671:53 669:. 665:. 642:. 630:. 607:. 595:. 574:}} 570:{{ 558:. 507:^ 405:. 392:. 304:. 109:. 50:, 2218:9 2214:6 2197:/ 2166:) 2144:) 2130:) 2116:) 2102:) 2088:) 2059:) 2045:) 2031:) 2017:) 1987:) 1967:/ 1961:) 1947:) 1920:/ 1819:/ 1814:, 1810:/ 1780:Y 1778:/ 1776:X 1760:/ 1750:) 1746:( 1742:/ 1681:/ 1677:/ 1656:7 1644:5 1637:/ 1628:4 1616:1 1608:/ 1604:/ 1600:/ 1596:/ 1592:( 1453:e 1446:t 1439:v 1261:e 1254:t 1247:v 1230:. 1220:6 1199:. 1175:: 1167:: 1140:. 1114:: 1084:. 1062:: 1035:. 1011:: 984:. 962:: 954:: 927:. 897:: 836:. 792:. 762:) 748:. 726:: 699:. 677:: 650:. 638:: 615:. 603:: 580:) 566:. 531:. 60:Δ 20:)

Index

Genetic deletion

genetics
Δ
mutation
chromosome
DNA
nucleotides
base
chromosomes
chromosome
synapsis
base flipping
chromosomal crossover
meiosis
genetic diseases
frameshift
eukaryotic
prokaryotic
translocation
Chromosomal crossovers
chromosomal inversion
Unequal crossing over


karyotype
G banding
centromere
homologous
autosomal

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