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Protein methods

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Lowry assay is similar to biuret assays, but it uses Folin reagent which is more accurate for quantification. Folin reagent is stable at only acidic conditions and the method is susceptible to skewing results depending on how much tryptophan and tyrosine is present in the examined protein. The
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Protein extraction from tissues with tough extracellular matrices (e.g., biopsy samples, venous tissues, cartilage, skin) is often achieved in a laboratory setting by impact pulverization in liquid nitrogen. Samples are frozen in liquid nitrogen and subsequently subjected to impact or mechanical
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G-250 dye is used. When free of protein, the dye is red but once bound to protein it turns blue. The dye-protein complex absorbs light maximally at the wavelength 595 nanometers and is sensitive for samples containing anywhere from 1 ug to 60 ug. Unlike Lowry and Warburg-Christian
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grinding. As water in the samples becomes very brittle at these temperature, the samples are often reduced to a collection of fine fragments, which can then be dissolved for protein extraction. Stainless steel devices known as tissue pulverizers are sometimes used for this purpose.
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Warburg–Christian method screens proteins at their naturally occurring absorbance ranges. Most proteins absorb light very well at 280 nanometers due to the presence of tryptophan and tyrosine, but the method is susceptible to varying amounts of the amino acids it relies on.
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Folin reagent binds to tryptophan and tyrosine which means the concentration of the two amino acids affects the sensitivity of the method. The method is sensitive at concentration ranges similar to the Bradford method, but requires a minuscule amount more of protein.
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The considerably small size of protein macromolecules makes identification and quantification of unknown protein samples particularly difficult. Several reliable methods for quantifying protein have been developed to simplify the process. These methods include
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Experimental analysis of proteins typically requires expression and purification of proteins. Expression is achieved by manipulating DNA that encodes the protein(s) of interest. Hence, protein analysis usually requires DNA methods, especially
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methods for studying proteins (e.g., for detecting proteins, for isolating and purifying proteins, and for characterizing the structure and function of proteins, often requiring that the protein first be purified).
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in the range of 100 ÎĽg/mL to 1 mg/mL. Ratio of absorbance readings taken at 260/280 can indicate purity/contamination of the sample (pure samples have a ratio <0.8)
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Advantages of these devices include high levels of protein extraction from small, valuable samples, disadvantages include low-level cross-over contamination.
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selectively introduces mutations that change the structure of a protein. The function of parts of proteins can be better understood by studying the change in
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Methods, Bradford assays do not rely on Tryptophan and Tyrosine content in proteins which allows the method to be more accurate hypothetically.
1314: 642: 523: 807: 308:, to produce a modified protein that is easier to track. An example of this would be GFP-Snf2H which consists of a protein bound to a 560:: technique of precipitating a protein antigen out of solution using an antibody that specifically binds to that particular protein. 851: 547: 230: 212: 56: 1169: 1149: 142: 42: 761: 1130: 912: 193: 146: 165: 1159: 1064: 351: 397: 1207: 877: 742: 727: 608: 172: 1306: 1212: 1140: 786: 131: 284:, and matching allele with disease states. Some proteins have never been directly sequenced, however by translating 732: 150: 135: 1164: 1154: 1144: 1106: 693: 309: 297: 277: 179: 1340: 1184: 1057: 661: 603: 458: 412: 870: 355: 161: 1255: 1217: 647: 446: 1174: 1016: 736: 652: 593: 573: 563: 259:
methods typically use computer programs to analyze proteins. However, many experimental methods (e.g.,
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More methods are listed below which link to more detailed accounts for their respective methods.
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as a result of this change. Fusion proteins are made by inserting protein tags, such as the
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Daniel M. Bollag, Michael D. Rozycki and Stuart J. Edelstein. (1996.)
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can be identified as being associated with disease states, such as in
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Bradford assay method uses a dye to bind to protein. Most commonly,
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Specific methods which can detect amount of a single protein
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Non-specific methods that detect total protein only
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Gel electrophoresis under non-denaturing conditions
292:by a method known as conceptual translation. (See 263:) require computational analysis of the raw data. 554:): Specifically can detect protein down to pg/mL. 352:size-exclusion chromatography (or gel filtration) 530:Liquid chromatography–mass spectrometry (LC/MS) 487:: Detection in the range of 20 - 640 ng/mL 467:: Detection in the range of 0.01–1.0 mg/mL 373:Gel electrophoresis under denaturing conditions 1065: 878: 524:High-performance liquid chromatography (HPLC) 8: 312:to form a hybrid protein. By analyzing DNA 149:. Unsourced material may be challenged and 57:Learn how and when to remove these messages 1072: 1058: 1050: 885: 871: 863: 449:: Detection in the range of ~1 mg/mL 231:Learn how and when to remove this message 213:Learn how and when to remove this message 1315:Photoactivated localization microscopy 1233:Protein–protein interaction prediction 643:Protein-fragment complementation assay 481:: Detection in the range of 1-12 ÎĽg/mL 362:Protein extraction and solubilization 7: 459:Bicinchoninic acid assay (BCA assay) 147:adding citations to reliable sources 1190:Freeze-fracture electron microscopy 14: 548:Enzyme-linked immunosorbent assay 246:are the techniques used to study 38:This article has multiple issues. 16:For methods with DNA or RNA, see 1170:Isothermal titration calorimetry 1150:Dual-polarization interferometry 735:(sequence comparison, including 119: 68: 27: 913:Post-translational modification 620:Interactions involving proteins 365:Concentrating protein solutions 324:Protein extraction from tissues 288:from known mRNA sequences into 46:or discuss these issues on the 83:format but may read better as 1: 1160:Chromatin immunoprecipitation 461:: Detection down to 0.5 ÎĽg/mL 1223:Protein structural alignment 1208:Protein structure prediction 808:Radioactive isotope labeling 743:Protein structural alignment 728:Protein structure prediction 632:Protein–protein interactions 609:Small-angle X-ray scattering 1307:Super-resolution microscopy 1213:Protein function prediction 1141:Peptide mass fingerprinting 1136:Protein immunoprecipitation 846:, 2 ed., Wiley Publishers. 787:Peptide mass fingerprinting 762:Hydrogen–deuterium exchange 558:Protein immunoprecipitation 1357: 954:Protein structural domains 733:Protein sequence alignment 453:Biuret Test Derived Assays 15: 1165:Surface plasmon resonance 1155:Microscale thermophoresis 1145:Protein mass spectrometry 1107:Green fluorescent protein 694:Microscale thermophoresis 638:(Yeast) two-hybrid system 318:calculation of LOD scores 310:green fluorescent protein 298:Site-directed mutagenesis 278:Site-directed mutagenesis 1185:Cryo-electron microscopy 700:Protein–RNA interactions 673:Protein–DNA interactions 662:Proximity ligation assay 604:Cryo-electron microscopy 413:Coomassie brilliant blue 398:Warburg–Christian method 346:Chromatography methods: 1218:Protein–protein docking 1131:Protein electrophoresis 356:affinity chromatography 92:converting this article 1117:Protein immunostaining 804:Heavy isotope labeling 747:Protein ontology (see 648:Co-immunoprecipitation 580:Protein immunostaining 447:Bradford protein assay 379:2D gel electrophoresis 1175:X-ray crystallography 1017:Photoreceptor protein 717:Computational methods 653:Affinity purification 594:X-ray crystallography 574:Immunoelectrophoresis 564:Immunoelectrophoresis 1102:Protein purification 908:Protein biosynthesis 792:Ligand binding assay 626:Protein footprinting 518:Spectrometry methods 337:Protein purification 143:improve this article 18:Nucleic acid methods 1127:Gel electrophoresis 801:Metabolic labeling 544:dependent methods: 465:Lowry Protein assay 369:Gel electrophoresis 1270:Display techniques 1122:Protein sequencing 772:Protein sequencing 723:Molecular dynamics 667:Proximity labeling 614:Circular Dichroism 588:Protein structures 391:Detecting proteins 343:Protein isolation 94:, if appropriate. 1328: 1327: 1277:Bacterial display 1047: 1046: 949:Protein structure 923:Protein targeting 830:Current Protocols 777:Protein synthesis 767:Mass spectrometry 706:Toeprinting assay 657:mass spectrometry 261:mass spectrometry 241: 240: 233: 223: 222: 215: 197: 162:"Protein methods" 113: 112: 61: 1348: 1292:Ribosome display 1228:Protein ontology 1074: 1067: 1060: 1051: 1027:Phycobiliprotein 985:Globular protein 980:Membrane protein 975:List of proteins 887: 880: 873: 864: 797:Eastern blotting 534:Pharmacokinetics 236: 229: 218: 211: 207: 204: 198: 196: 155: 123: 115: 108: 105: 99: 90:You can help by 72: 71: 64: 53: 31: 30: 23: 1356: 1355: 1351: 1350: 1349: 1347: 1346: 1345: 1341:Protein methods 1331: 1330: 1329: 1324: 1301: 1265: 1261:Secretion assay 1237: 1194: 1088: 1078: 1048: 1043: 1007:Fibrous protein 963: 937: 933:Protein methods 918:Protein folding 896: 891: 861: 844:Protein Methods 839: 818: 758: 719: 702: 684:Chip-sequencing 675: 634: 622: 590: 514: 497:Kjeldahl method 433: 393: 385:Electrofocusing 340: 326: 269: 267:Genetic methods 244:Protein methods 237: 226: 225: 224: 219: 208: 202: 199: 156: 154: 140: 124: 109: 103: 100: 89: 73: 69: 32: 28: 21: 12: 11: 5: 1354: 1352: 1344: 1343: 1333: 1332: 1326: 1325: 1323: 1322: 1317: 1311: 1309: 1303: 1302: 1300: 1299: 1294: 1289: 1284: 1279: 1273: 1271: 1267: 1266: 1264: 1263: 1258: 1253: 1247: 1245: 1239: 1238: 1236: 1235: 1230: 1225: 1220: 1215: 1210: 1204: 1202: 1200:Bioinformatics 1196: 1195: 1193: 1192: 1187: 1182: 1177: 1172: 1167: 1162: 1157: 1152: 1147: 1138: 1133: 1124: 1119: 1114: 1109: 1104: 1098: 1096: 1090: 1089: 1079: 1077: 1076: 1069: 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13: 10: 9: 6: 4: 3: 2: 1353: 1342: 1339: 1338: 1336: 1321: 1318: 1316: 1313: 1312: 1310: 1308: 1304: 1298: 1297:Yeast display 1295: 1293: 1290: 1288: 1287:Phage display 1285: 1283: 1280: 1278: 1275: 1274: 1272: 1268: 1262: 1259: 1257: 1256:Protein assay 1254: 1252: 1249: 1248: 1246: 1244: 1240: 1234: 1231: 1229: 1226: 1224: 1221: 1219: 1216: 1214: 1211: 1209: 1206: 1205: 1203: 1201: 1197: 1191: 1188: 1186: 1183: 1181: 1178: 1176: 1173: 1171: 1168: 1166: 1163: 1161: 1158: 1156: 1153: 1151: 1148: 1146: 1142: 1139: 1137: 1134: 1132: 1128: 1125: 1123: 1120: 1118: 1115: 1113: 1110: 1108: 1105: 1103: 1100: 1099: 1097: 1095: 1091: 1086: 1082: 1075: 1070: 1068: 1063: 1061: 1056: 1055: 1052: 1038: 1035: 1033: 1030: 1028: 1025: 1024: 1023: 1020: 1018: 1015: 1013: 1012:Chromoprotein 1010: 1008: 1005: 1001: 998: 996: 993: 991: 988: 987: 986: 983: 981: 978: 976: 973: 972: 970: 966: 960: 957: 955: 952: 950: 947: 946: 944: 940: 934: 931: 929: 926: 924: 921: 919: 916: 914: 911: 909: 906: 905: 903: 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There are 243: 242: 227: 209: 200: 190: 183: 176: 169: 157: 141:Please help 129: 101: 96:Editing help 78: 54: 47: 41: 40:Please help 37: 1320:Vertico SMI 1180:Protein NMR 1032:Phytochrome 1022:Biliprotein 599:Protein NMR 576:technique). 493:detection: 479:Amido black 402:Lowry assay 290:amino acids 959:Proteasome 942:Structures 859:References 782:Proteomics 437:Absorbance 280:, using a 203:April 2013 173:newspapers 43:improve it 1037:Lipocalin 901:Processes 441:Detection 302:phenotype 130:does not 49:talk page 1335:Category 1087:of study 1081:Proteins 990:Globulin 928:Proteome 894:Proteins 816:See also 542:Antibody 491:Nitrogen 248:proteins 1085:methods 1000:Albumin 995:Edestin 711:TCP-seq 314:alleles 306:His-tag 274:cloning 187:scholar 151:removed 136:sources 1083:: key 850:  404:, and 286:codons 189:  182:  175:  168:  160:  79:is in 1243:Assay 968:Types 737:BLAST 689:DamID 552:ELISA 194:JSTOR 180:books 85:prose 848:ISBN 655:and 166:news 134:any 132:cite 81:list 296:.) 145:by 1337:: 520:: 455:: 400:, 354:, 350:, 320:. 52:. 1143:/ 1129:/ 1073:e 1066:t 1059:v 886:e 879:t 872:v 854:. 751:) 739:) 550:( 536:. 234:) 228:( 216:) 210:( 205:) 201:( 191:· 184:· 177:· 170:· 153:. 139:. 106:) 102:( 88:. 59:) 55:( 20:.

Index

Nucleic acid methods
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talk page
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list
prose
converting this article
Editing help

cite
sources
improve this article
adding citations to reliable sources
removed
"Protein methods"
news
newspapers
books
scholar
JSTOR
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proteins
mass spectrometry
cloning
Site-directed mutagenesis
fusion protein
codons
amino acids
genetic code

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