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Temple F. Smith

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His research is centered on the application of various computer science and mathematical methods for the discovery of the syntactic and semantic patterns in nucleic acid and amino acid sequences. In recent years this has focus on molecular evolution of protein families. such as the WD-repeat beta
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Venkatesan, Kavitha, McManus, Heather R., Mello, Craig C., Smith, Temple F. and Hansen, Ulla. (2003). Functional conservation between members of an ancient duplicated transcription factor family, LSF/Grainyhead. Nucleic Acids Research 31(15),
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Bienkowska, Jadwiga, Hartman, Hyman and Smith, Temple F. (2003). A search method for homologs of small proteins, Ubiquitin-like proteins in prokaryotic cells? Protein Engineering 16 (12), 897–904.
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Bhutkar, Arjun V., Gelbart, William M. and Smith, Temple F. (2007). Inferring genome-scale rearrangement phylogeny and ancestral gene order: A Drosophila case study. Genome Biology 8, R236
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M. Mariotti, T. F. Smith, P. H. Sudmant and G. Goldberger, “Pseudogenization of testis-specific Lfg5 predates human/Neanderthal divergence”, Journal of Human Genetics 59, 288–291 (2014)
392:“for extraordinary contributions in defining and advancing the field of bioinformatics, with emphasis on novel engineering methods to predict protein structure and function”. 356:
Zhang YX1, Fox JG, Ho Y, Zhang L, Stills HF Jr, Smith TF. Comparison of the major outer-membrane protein (MOMP) gene of mouse pneumonitis (MoPn) and hamster SFPD strains of
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Bhutkar, Arjun, Russo, Susan M., Smith, Temple F. and Gelbart, William M. “Genome-Scale Analysis of Positionally Relocated Genes” Genome Research 17: 1880-1887 (2007)
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in 1981. The Smith-Waterman algorithm serves as the basis for multi sequence comparisons, identifying the segment with the maximum local sequence similarity, see
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Smith, Temple F., Lee, Jung C., Gutell, Robin R. and Hartman, Hyman. “The Origin and Evolution of the Ribosome” Biology Direct 3: 16, 1–13 (2008)
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Hartman, Hyman and Smith, Temple F. “The evolution of the cilium and the eukaryotic cell” Cell Motility and the Cytoskeleton.66: 215-219. (2009)
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Hartman, Hyman, Favaretto, Paola and Smith, Temple F. “The Archaeal Origins of the Eukaryotic Translational System” Archaea 2: 1-9 (2006)
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Hu, Lan, Smith, Temple F. and Goldberger, Gabriel. “LFG: a candidate apoptosis regulatory gene family” Apoptosis. 14: 1255-1265. (2009)
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Figge J, Smith TF. Cell division sequence motif. Nature 334 (6178), 109 (14 July 1988) |pmid=3290690 |doi=10.1038/334109a0.
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from March 1969 to August 1971 in the Department of Biophysics and Genetics, University of Colorado Medical School, Boulder.
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Hyman Hartman and Temple F. Smith “The Evolution of the Ribosome and the Genetic Code”, Life, 4(2), 227–249 (2014)
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propellers, translation associated GTPase, and the ribosomal proteins. He is known for the creation of the
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Smith, Temple F. “Chapter 2: Diversity of WD-Repeat Proteins” The Coronin Family of Proteins, 20–30 (2008)
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Hartman, H and T. F. Smith, “GTPases and the origin of the ribosome”, Biology Direct, 5:36-39, (2010)
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segments. He was director of the BioMolecular Engineering Research Center at
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The deuteron amplitudes from a composite particle nuclear scattering theory
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The deuteron amplitudes from a composite particle nuclear scattering theory
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Smith obtained his bachelor's degree in 1963 from the Physics Department,
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Fellows of the American Institute for Medical and Biological Engineering
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with other Chlamydia strains. Mol Biol Evol. 1993 Nov;10(6):1327–42.
277:, Department of Physics, Northern Michigan University, Marquette, MI 562:"BioMolecular Engineering Research Center | Boston University" 390:
American Institute for Medical and Biological Engineering (AIMBE)
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Fellows of the International Society for Computational Biology
291:, BioMolecular Engineering Resource Center, Boston University 208: 204: 561: 511:(1981). "Identification of common molecular subsequences". 642:"Temple F. Smith, Ph.D. Â» Microbiology Â» BUMC" 235:, followed by a PhD in 1969 in the Physics Department, 1351: 1280: 1209: 1178: 1127: 1076: 1000: 949: 913: 872: 826: 795: 754: 708: 158: 136: 126: 96: 86: 64: 40: 21: 614:(PhD thesis). University of Colorado at Boulder. 203:. This algorithm is used for identifying similar 187:(born March 7, 1939) is an emeritus professor in 698:International Society for Computational Biology 485:International Society for Computational Biology 383:International Society for Computational Biology 678: 8: 414:"ISCB Honors Temple F. Smith and Eran Segal" 262:Smith has held the following appointments: 685: 671: 663: 29: 18: 526: 471: 469: 449: 439: 407: 405: 303:Co-Founder and Chief Information Officer 556: 554: 401: 219:for twenty years and is now professor 7: 502: 500: 498: 14: 270:, US Air Force Lowery, Denver, CO 237:University of Colorado at Boulder 308:2000– : Youth Hockey Coach 388:Im 2002, he was inducted into 77:University of Colorado Boulder 1: 610:Smith, Temple Ferris (1969). 537:10.1016/0022-2836(81)90087-5 514:Journal of Molecular Biology 441:10.1371/journal.pcbi.0030128 35:Temple Smith at Yale in 2008 375:ISCB Senior Scientist Award 104:ISCB Senior Scientist Award 1466: 1435:American bioinformaticians 419:PLOS Computational Biology 191:who helped to develop the 247:After his PhD, Smith did 154: 119: 28: 305:, Modular Genetics, Inc. 257:Smith-Waterman algorithm 193:Smith-Waterman algorithm 91:Smith-Waterman algorithm 487:. 2017. Archived from 373:Smith was awarded the 189:biomedical engineering 358:Chlamydia trachomatis 313:Selected publications 249:postdoctoral research 174:/temple-f-smith-ph-d 1343:Gustavo Stolovitzky 967:Julio Collado-Vides 432:2007PLSCB...3..128M 412:Maisel, M. (2007). 243:Research and career 185:Temple Ferris Smith 45:Temple Ferris Smith 1409:Reinhard Schneider 1201:Marie-France Sagot 1196:Xiaole Shirley Liu 201:sequence alignment 1417: 1416: 1323:NĂşria LĂłpez Bigas 1257:Katherine Pollard 1217:Serafim Batzoglou 1140:Terry Gaasterland 864:Gunnar von Heijne 803:Michael Ashburner 369:Awards and honors 233:Purdue University 217:Boston University 182: 181: 131:Boston University 121:Scientific career 72:Purdue University 16:American academic 1457: 1374:Takashi Gojobori 1333:Teresa Przytycka 1313:Christina Leslie 1135:Patricia Babbitt 1114:Olga Troyanskaya 1038:Christine Orengo 936:Robert Gentleman 787:Alfonso Valencia 746:Michael Waterman 702:year of election 687: 680: 673: 664: 657: 656: 654: 653: 644:. Archived from 638: 632: 631: 607: 601: 600: 598: 597: 588:. Archived from 582: 576: 575: 573: 572: 566:Bmerc-www.bu.edu 558: 549: 548: 530: 504: 493: 492: 473: 464: 463: 453: 443: 409: 197:Michael Waterman 178: 175: 173: 171: 169: 167: 165: 150: 59:Auburn, New York 55: 53: 33: 19: 1465: 1464: 1460: 1459: 1458: 1456: 1455: 1454: 1420: 1419: 1418: 1413: 1369:Mikhail Gelfand 1347: 1293:A. Keith Dunker 1276: 1247:Rafael Irizarry 1227:Mark Borodovsky 1205: 1174: 1160:William Pearson 1123: 1089:Andrea Califano 1072: 1058:Anna Tramontano 1053:Sarah Teichmann 1008:Helen M. Berman 996: 982:Thomas Lengauer 945: 909: 905:Steven Salzberg 890:Minoru Kanehisa 885:David Eisenberg 868: 822: 791: 767:Lawrence Hunter 750: 704: 691: 661: 660: 651: 649: 640: 639: 635: 609: 608: 604: 595: 593: 584: 583: 579: 570: 568: 560: 559: 552: 509:Waterman, M. S. 506: 505: 496: 475: 474: 467: 411: 410: 403: 398: 381:in 2009 by the 371: 366: 315: 245: 229: 162: 148: 115: 82: 65:Alma mater 60: 57: 51: 49: 47: 46: 36: 24: 17: 12: 11: 5: 1463: 1461: 1453: 1452: 1447: 1442: 1437: 1432: 1422: 1421: 1415: 1414: 1412: 1411: 1406: 1401: 1396: 1391: 1386: 1381: 1376: 1371: 1366: 1361: 1359:Barbara Bryant 1355: 1353: 1349: 1348: 1346: 1345: 1340: 1335: 1330: 1325: 1320: 1315: 1310: 1305: 1303:Wolfgang Huber 1300: 1295: 1290: 1284: 1282: 1278: 1277: 1275: 1274: 1269: 1264: 1259: 1254: 1249: 1244: 1239: 1234: 1229: 1224: 1219: 1213: 1211: 1207: 1206: 1204: 1203: 1198: 1193: 1188: 1182: 1180: 1176: 1175: 1173: 1172: 1167: 1162: 1157: 1152: 1147: 1145:Hanah Margalit 1142: 1137: 1131: 1129: 1125: 1124: 1122: 1121: 1116: 1111: 1106: 1101: 1096: 1091: 1086: 1080: 1078: 1074: 1073: 1071: 1070: 1065: 1063:Shoshana Wodak 1060: 1055: 1050: 1045: 1040: 1035: 1030: 1025: 1020: 1015: 1013:Steven Brenner 1010: 1004: 1002: 998: 997: 995: 994: 989: 987:Michael Levitt 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648:on 2012-04-04 647: 643: 637: 634: 629: 625: 621: 617: 613: 606: 603: 592:on 2007-07-07 591: 587: 581: 578: 567: 563: 557: 555: 551: 546: 542: 538: 534: 529: 524: 520: 516: 515: 510: 503: 501: 499: 495: 490: 486: 482: 478: 472: 470: 466: 461: 457: 452: 447: 442: 437: 433: 429: 425: 421: 420: 415: 408: 406: 402: 395: 393: 391: 386: 384: 380: 376: 368: 362: 359: 355: 351: 348: 345: 342: 339: 336: 333: 330: 327: 324: 321: 318: 317: 312: 307: 304: 301:2000– : 300: 297: 294:1999– : 293: 290: 286: 283: 279: 276: 272: 269: 265: 264: 263: 260: 258: 252: 250: 242: 240: 238: 234: 226: 224: 222: 218: 214: 210: 206: 202: 198: 194: 190: 186: 177: 161: 157: 153: 146: 145: 141: 139: 135: 132: 129: 125: 122: 118: 111: 108: 105: 102: 101: 99: 95: 92: 89: 85: 78: 75: 73: 70: 69: 67: 63: 56:(age 85) 48:March 7, 1939 43: 39: 32: 27: 20: 1399:Debora Marks 1338:Eytan Ruppin 1267:Zhiping Weng 1252:Laxmi Parida 1232:Rita Casadio 1222:Judith Blake 1186:Vineet Bafna 1119:Tandy Warnow 1109:Lior Pachter 1099:Anders Krogh 1084:Alex Bateman 1068:Haim Wolfson 1018:Dan Gusfield 931:Nir Friedman 921:Amos Bairoch 880:Pierre Baldi 844:Jill Mesirov 813:Søren Brunak 777:Chris Sander 772:Eugene Myers 736:Temple Smith 735: 721:David Lipman 650:. Retrieved 646:the original 636: 611: 605: 594:. Retrieved 590:the original 580: 569:. Retrieved 565: 518: 512: 489:the original 480: 423: 417: 387: 377:and elected 372: 302: 296:Co-organizer 295: 288: 281: 274: 267: 261: 253: 246: 230: 184: 183: 142: 127:Institutions 120: 23:Temple Smith 1445:1939 births 1384:David Jones 1379:Trey Ideker 1262:Ben Raphael 1242:Osamu Gotoh 1237:Paul Flicek 1150:Yves Moreau 1028:Janet Kelso 1023:Barry Honig 977:Des Higgins 941:Andrej Ĺ ali 926:Ewan Birney 808:Phil Bourne 782:Gary Stormo 762:Russ Altman 726:Webb Miller 507:Smith, T.; 426:(6): e128. 379:ISCB Fellow 287:1991–2009: 280:1985–1991: 273:1971–1984: 266:1965–1966: 110:ISCB Fellow 1424:Categories 1328:Dana Pe'er 1288:Atul Butte 1170:Mike Steel 1165:Mona Singh 1043:Aviv Regev 854:Ron Shamir 839:Peter Karp 652:2011-10-28 596:2007-05-03 571:2017-03-24 396:References 353:4304–4316. 268:Instructor 52:1939-03-07 1404:Mihai Pop 1364:Sean Eddy 628:302393082 523:CiteSeerX 275:Professor 227:Education 624:ProQuest 620:50252533 481:iscb.org 460:17604447 289:Director 282:Director 221:emeritus 172:/profile 1394:Jun Liu 1318:Ming Li 696:of the 694:Fellows 545:7265238 451:1904388 428:Bibcode 213:protein 159:Website 50: ( 626:  618:  543:  525:  458:  448:  149:(1969) 147:  138:Thesis 112:(2009) 106:(2007) 97:Awards 195:with 79:(PhD) 1352:2022 1281:2021 1210:2020 1179:2019 1128:2018 1077:2017 1001:2016 950:2015 914:2014 873:2013 827:2012 796:2011 755:2010 709:2009 616:OCLC 541:PMID 456:PMID 211:and 170:/eng 168:.edu 41:Born 700:by 533:doi 519:147 446:PMC 436:doi 209:RNA 205:DNA 166:.bu 164:www 1426:: 622:. 564:. 553:^ 539:. 531:. 517:. 497:^ 483:. 479:. 468:^ 454:. 444:. 434:. 422:. 416:. 404:^ 385:. 259:. 239:. 223:. 207:, 686:e 679:t 672:v 655:. 630:. 599:. 574:. 547:. 535:: 462:. 438:: 430:: 424:3 176:/ 54:)

Index


Purdue University
University of Colorado Boulder
Smith-Waterman algorithm
ISCB Senior Scientist Award
ISCB Fellow
Boston University
Thesis
The deuteron amplitudes from a composite particle nuclear scattering theory
www.bu.edu/eng/profile/temple-f-smith-ph-d/
biomedical engineering
Smith-Waterman algorithm
Michael Waterman
sequence alignment
DNA
RNA
protein
Boston University
emeritus
Purdue University
University of Colorado at Boulder
postdoctoral research
Smith-Waterman algorithm
Chlamydia trachomatis
ISCB Senior Scientist Award
ISCB Fellow
International Society for Computational Biology
American Institute for Medical and Biological Engineering (AIMBE)

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