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Initiation factor

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437:, it helps to bind the ribosomal subunit to the mRNA. The initiation factor has been linked to cancers through over-expression. For example, one of the thirteen eIF3 proteins, eIF3c, interacts with and represses proteins used in tumor suppression. Limited expression of certain eIF3 proteins, such as eIF3a an eIF3d, has been proven to decrease the vigorous growth of cancer cells. The over-expression of eIF3a has been linked to breast, lung, cervix, esophagus, stomach, and colon cancers. It is prevalent during early stages of oncogenesis and likely selectively translates proteins needed for cell proliferation. When eIF3a is suppressed, it has shown to decrease the malignancy of breast and lung cancer, most likely due to its role in tumor growth. 373:, binds the tRNA containing methionine to the P site of the small ribosome. The P site is where the tRNA carrying an amino acid forms a peptide bond with the incoming amino acids and carries the peptide chain. The factor consists of an alpha, beta, and gamma subunit. The eIF2 gamma subunit is characterized by a GTP-binding domain and beta-barrel folds. It binds to the tRNA through GTP. Once the initiation factor helps the tRNA bind, the GTP hydrolyzes and is released the eIF2. The eIF2 beta subunit is identified by its Zn-finger. The eIF2 alpha subunit is characterized by an OB-fold domain and two beta strands. This subunit helps to regulate translation, as it becomes phosphorylated to inhibit protein synthesis. 366:, composed of the small 40S subunit attached to other initiation factors. It also helps to create the 48S pre-initiation complex, consisting of the 43S complex with the mRNA. The eIF3 factor can also be used post-translation in order to separate the ribosomal complex and keep the small and large subunits apart. The initiation factor interacts with the eIF1 and eIF5 factors used for scanning and selection of the start codons. This can create changes in the selection of the factors, binding to different codons. 406: 418:
needed in cancers. Some initiation factors, such as eIF4E, are important in synthesizing specific proteins needed for the proliferation and survival of cancer. The careful selection of proteins ensures that proteins that are usually limited in translation and only proteins needed for cancer cell growth will be synthesized. This includes proteins involved in growth, malignancy, and angiogenesis. The eIF4E factor, along with eIF4A and eIF4G, also play a role in transitioning
347: 343:. IF2 and eIF5B assist in the joining of the small and large ribosomal subunits. The eIF5B factor also contains elongation factors. Domain IV of eIF5B is closely related to the C-terminal domain of IF2, as they both consist of a beta-barrel. The elF5B also contains a GTP-binding domain, which can switch from an active GTP to an inactive GDP. This switch helps to regulate the affinity of the ribosome for the initiation factor. 320:
Many structural domains have been conserved through evolution, as prokaryotic initiation factors share similar structures with eukaryotic factors. The prokaryotic initiation factor, IF3, assists with start site specificity, as well as mRNA binding. This is in comparison with the eukaryotic initiation
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is directly related to the modification of initiation factors and is used as a target for pharmaceuticals. Cells need increased energy when cancerous and derive this energy from proteins. Over-expression of initiation factors correlates with cancers, as they increase protein synthesis for proteins
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can bind and scan the mRNA for the start codon. During this process, the 60S ribosomal subunit binds and the large 80S ribosomal complex is formed. The eIF4G plays a role, as it interacts with the polyA-binding protein, attracting the mRNA. The eIF4E then binds the cap of the mRNA and the small
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ribosomal subunit binds to the eIF4G to begin the process of creating the 80S ribosomal complex. The eIF4A works to make this process more successful, as it is a DEAD box helicase. It allows for the unwinding of the untranslated regions of the mRNA to allow for ribosomal binding and scanning.
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factor, eIF1, who also performs these functions. The elF1 structure is similar to the C-terminal domain of IF3, as they each contain a five-stranded beta sheet against two alpha helices.
1565: 1389: 976: 97:, and finally joins together with the large subunit of ribosome. The initiation factors that help with this process each have different roles and structures. 684:"Translational control by 80S formation and 60S availability: the central role of eIF6, a rate limiting factor in cell cycle progression and tumorigenesis" 1944: 1954: 1691: 1991: 1987: 466: 2366: 2361: 2356: 2351: 2341: 2321: 2316: 2306: 2296: 2276: 2271: 2266: 2256: 2251: 2246: 2241: 2231: 2221: 2216: 2211: 2206: 1983: 639:
Rossi D, Kuroshu R, Zanelli CF, Valentini SR (2013). "eIF5A and EF-P: two unique translation factors are now traveling the same road".
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plays an important role in translational initiation. It has a complex structure, composed of 13 subunits. It helps to create the
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In cancerous cells, initiation factors assist in cellular transformation and development of tumors. The survival and growth of
377: 228: 172: 147: 85:). Translation initiation is sometimes described as three step process which initiation factors help to carry out. First, the 1749: 120: 2630: 130: 2346: 2336: 2331: 2326: 2311: 2301: 2291: 2286: 2281: 2261: 2236: 2226: 779:
Dong Z, Zhang JT (September 2006). "Initiation factor eIF3 and regulation of mRNA translation, cell growth, and cancer".
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Benelli D, Londei P (January 2011). "Translation initiation in Archaea: conserved and domain-specific features".
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complex supports the cap-dependent translation initiation process and is composed of the initiation factors
2146: 1001: 944: 47: 993: 989: 405: 2002: 1962: 997: 985: 62: 51: 1527: 251: 664: 346: 109:. There are some homologies shared (click the domain names to see the domain-specific factors): 1673: 1490: 901: 845: 796: 756: 705: 656: 621: 572: 522: 472: 462: 31: 922: 433:, is another significant initiation factor in human cancers. Due to its role in creating the 2547: 2537: 2532: 2522: 2512: 2492: 2477: 2472: 2467: 2452: 2447: 2442: 2427: 1575: 891: 883: 835: 827: 788: 746: 736: 695: 648: 611: 603: 564: 514: 502: 106: 2417: 2397: 2392: 2382: 1072: 1062: 1635: 896: 871: 840: 815: 751: 724: 616: 591: 351: 518: 17: 2619: 2585: 792: 668: 1187: 1054: 419: 392:. The cap end of the mRNA, being the 5’ end, is brought to the complex where the 292: 245: 222: 191: 166: 141: 2590: 340: 831: 607: 592:"Large-Scale Movements of IF3 and tRNA during Bacterial Translation Initiation" 339:, bind to the A site and assist in the assembly of initiation complexes at the 2595: 887: 741: 590:
Hussain T, LlΓ‘cer JL, Wimberly BT, Kieft JS, Ramakrishnan V (September 2016).
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to slow down or prevent translation. They have the ability to interact with
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The prokaryotic initiation factors IF1 and IF2 are also homologs of the
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The initiation factors are divided into three major groups by taxonomic
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amino acid binds to the small subunit of ribosome, then binds to the
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keeps two ribosomal subunits disassociated by binding large subunit
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de la Parra C, Walters BA, Geter P, Schneider RJ (February 2018).
389: 385: 381: 345: 332: 328: 259: 180: 155: 816:"Eukaryotic initiation factor 4A (eIF4A) during viral infections" 69:, they are simply called IFs (i.e.., IF1, IF2, & IF3) and in 1646: 1621: 1542: 1537: 1532: 1522: 1517: 1472: 1462: 1433: 1423: 1335: 1253: 1241: 1172: 1146: 1136: 1126: 430: 370: 359: 304: 278: 211: 196: 94: 86: 82: 78: 74: 958: 872:"Translation initiation factors and their relevance in cancer" 65:
to help them start or increase the rate of translation. In
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The bacterial 30S initiation complex, also showing the
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Brina D, Grosso S, Miluzio A, Biffo S (October 2011).
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Protein which binds to a ribosome during translation
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Freeman and Co. 57:Initiation factors can interact with 7: 774: 772: 770: 729:Cellular and Molecular Life Sciences 641:Wiley Interdisciplinary Reviews. RNA 496: 494: 492: 490: 488: 486: 452: 450: 354:sequence upstream of the start codon 335:. IF1 and eIF1A, both containing an 25: 793:10.1016/j.critrevonc.2006.03.005 557:Biochemical Society Transactions 429:The largest initiation factor, 358:A eukaryotic initiation factor 73:they are known as eIFs (i.e.., 1: 519:10.1016/S0959-440X(03)00009-5 326:eukaryotic initiation factors 950:Eukaryotic initiation factor 2652: 832:10.1007/s11262-019-01641-7 608:10.1016/j.cell.2016.08.074 435:43S pre-initiation complex 364:43S pre-initiation complex 2581:Aminoacyl tRNA synthetase 888:10.1016/j.gde.2017.11.001 742:10.1007/s00018-015-2010-3 46:during the initiation of 2605:Kozak consensus sequence 927:Medical Subject Headings 239:fidelity of start codon 2601:Shine-Dalgarno sequence 185:diverse across domains 160:diverse across domains 945:Eukaryotic translation 701:10.4161/cc.10.20.17796 410: 355: 316:Structure and function 18:Translation initiation 723:Gualerzi CO, Pon CL. 408: 394:43S ribosomal complex 349: 264:an elongation factor 2631:Protein biosynthesis 1501:​Mitochondrial 986:Protein biosynthesis 52:protein biosynthesis 1674:Ribosomal Proteins 602:(1): 133–144.e13. 569:10.1042/BST0390089 411: 356: 36:initiation factors 2626:Molecular biology 2613: 2612: 2569: 2568: 2565: 2564: 2561: 2560: 2141: 2140: 1630: 1629: 1554:​Eukaryotic 1491:Elongation factor 1485: 1484: 1481: 1480: 1018:Initiation factor 923:Initiation+Factor 735:(22): 4341–4367. 653:10.1002/wrna.1211 468:978-0-7167-7998-8 313: 312: 32:molecular biology 16:(Redirected from 2643: 2152: 1688: 1679: 1553: 1500: 1496: 1466: 1427: 1339: 1257: 1176: 1130: 1121: 1023: 1014: 979: 972: 965: 956: 910: 909: 899: 867: 854: 853: 843: 811: 805: 804: 776: 765: 764: 754: 744: 720: 714: 713: 703: 679: 673: 672: 636: 630: 629: 619: 587: 581: 580: 552: 531: 530: 498: 481: 480: 454: 422:cancer cells to 269:(three subunits) 135:Common function 112: 21: 2651: 2650: 2646: 2645: 2644: 2642: 2641: 2640: 2636:Gene expression 2616: 2615: 2614: 2609: 2557: 2371: 2137: 1949: 1668: 1626: 1547: 1477: 1460: 1455: 1421: 1416: 1333: 1328: 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893: 889: 885: 881: 877: 873: 866: 864: 862: 860: 856: 851: 847: 842: 837: 833: 829: 825: 821: 817: 810: 807: 802: 798: 794: 790: 787:(3): 169–80. 786: 782: 775: 773: 771: 767: 762: 758: 753: 748: 743: 738: 734: 730: 726: 719: 716: 711: 707: 702: 697: 693: 689: 685: 678: 675: 670: 666: 662: 658: 654: 650: 647:(2): 209–22. 646: 642: 635: 632: 627: 623: 618: 613: 609: 605: 601: 597: 593: 586: 583: 578: 574: 570: 566: 562: 558: 551: 549: 547: 545: 543: 541: 539: 537: 533: 528: 524: 520: 516: 512: 508: 504: 497: 495: 493: 491: 489: 487: 483: 478: 474: 470: 464: 460: 453: 451: 447: 440: 438: 436: 432: 427: 425: 421: 416: 407: 400: 398: 395: 391: 387: 383: 379: 374: 372: 367: 365: 361: 353: 348: 344: 342: 338: 334: 330: 327: 322: 315: 308: 306: 303: 300: 297: 295: 294: 290: 289: 282: 280: 277: 274: 271: 268: 267: 263: 261: 258: 255: 253: 250: 248: 247: 243: 242: 238: 235: 232: 230: 227: 225: 224: 220: 219: 215: 213: 210: 207: 204: 201: 198: 194: 193: 189: 188: 184: 182: 179: 176: 174: 171: 169: 168: 164: 163: 159: 157: 154: 151: 149: 146: 144: 143: 139: 138: 134: 132: 129: 127: 124: 122: 119: 117: 114: 113: 110: 108: 100: 98: 96: 92: 88: 84: 80: 76: 72: 68: 64: 60: 55: 53: 49: 45: 41: 37: 33: 19: 1653:Class 2/RF3 1461: 1422: 1334: 1252: 1171: 1125: 1017: 879: 875: 823: 819: 809: 784: 780: 732: 728: 718: 691: 687: 677: 644: 640: 634: 599: 595: 585: 563:(1): 89–93. 560: 556: 513:(1): 56–63. 510: 506: 458: 428: 412: 375: 368: 357: 323: 319: 291: 244: 221: 202: 190: 165: 140: 104: 56: 50:, a part of 35: 29: 2591:Start codon 2376:28S subunit 2155:39S subunit 1955:40S subunit 1692:60S subunit 1683:Cytoplasmic 1147:SUI1 family 990:translation 820:Virus Genes 341:start codon 89:carrying a 48:translation 2620:Categories 2596:Stop codon 1940:RRP15-like 1750:RPL10-like 1499:Bacterial/ 1116:Eukaryotic 1002:eukaryotic 688:Cell Cycle 441:References 424:metastatic 283:binds tRNA 131:Eukaryotic 91:methionine 71:eukaryotes 63:activators 59:repressors 1552:Archaeal/ 1027:Bacterial 994:bacterial 882:: 82–88. 477:814245170 401:In cancer 293:IPR002769 246:IPR001884 223:IPR001288 192:IPR001950 167:IPR015760 142:IPR006196 121:Bacterial 1643:Class 1 1083:Archaeal 1010:Proteins 998:archaeal 940:Ribosome 934:See also 906:29153484 850:30796742 801:16829125 761:26259514 710:22031223 669:25447826 661:24402910 626:27662086 577:21265752 527:12581660 126:Archaeal 116:InterPro 67:bacteria 44:ribosome 40:proteins 1945:RSL24D1 1622:a/eEF-2 1561:a/eEF-1 897:7269109 841:7088766 752:4611024 617:5037330 337:OB-fold 107:domains 2113:RPS27A 2053:RPS15A 1992:RPS4Y2 1988:RPS4Y1 1982:RPS4 ( 1900:RPL37A 1890:RPL36A 1880:RPL35A 1840:RPL27A 1820:RPL23A 1795:RPL18A 1770:RPL13A 1745:RPL10A 1200:γ 1195:β 1188:kinase 1183:α 929:(MeSH) 904:  894:  848:  838:  799:  759:  749:  708:  667:  659:  624:  614:  575:  525:  475:  465:  420:benign 415:cancer 388:, and 2383:MRPS1 2162:MRPL1 2133:RACK1 2128:RPS30 2123:RPS29 2118:RPS28 2108:RPS27 2103:RPS26 2098:RPS25 2093:RPS24 2088:RPS23 2083:RPS21 2078:RPS20 2073:RPS19 2068:RPS18 2063:RPS17 2058:RPS16 2048:RPS15 2043:RPS14 2038:RPS13 2033:RPS12 2028:RPS11 2023:RPS10 1984:RPS4X 1978:RPS3A 1935:RPLP2 1930:RPLP1 1925:RPLP0 1920:RPL41 1915:RPL40 1910:RPL39 1905:RPL38 1895:RPL37 1885:RPL36 1875:RPL35 1870:RPL34 1865:RPL32 1860:RPL31 1855:RPL30 1850:RPL29 1845:RPL28 1835:RPL27 1830:RPL26 1825:RPL24 1815:RPL23 1810:RPL22 1805:RPL21 1800:RPL19 1790:RPL18 1785:RPL17 1780:RPL15 1775:RPL14 1765:RPL13 1760:RPL12 1755:RPL11 1740:RPL10 1725:RPL7A 1662:GSPT2 1657:GSPT1 1513:EF-Ts 1508:EF-Tu 1439:EIF5A 1242:eIF2D 1210:eIF2B 1205:eIF2A 1154:eIF1A 1073:MTIF3 1068:MTIF2 1063:MTIF1 665:S2CID 390:eIF4G 386:eIF4E 382:eIF4A 378:eIF4F 333:eIF5B 329:eIF1A 260:eIF5A 256:aIF5A 181:eIF5B 177:aIF5B 156:eIF1A 152:aIF1A 101:Types 2018:RPS9 2013:RPS8 2008:RPS7 2003:RPS6 1998:RPS5 1973:RPS3 1968:RPS2 1963:RPSA 1735:RPL9 1730:RPL8 1720:RPL7 1715:RPL6 1710:RPL5 1705:RPL4 1700:RPL3 1647:eRF1 1543:GFM2 1538:GFM1 1533:TSFM 1528:EF-P 1523:EF-4 1518:EF-G 1473:EIF6 1463:eIF6 1434:EIF5 1424:eIF5 1336:eIF4 1254:eIF3 1173:eIF2 1137:eIF1 1127:eIF1 1106:aIF6 1101:aIF5 1096:aIF2 1091:aIF1 902:PMID 846:PMID 797:PMID 757:PMID 706:PMID 657:PMID 622:PMID 596:Cell 573:PMID 523:PMID 473:OCLC 463:ISBN 431:eIF3 376:The 371:eIF2 360:eIF3 331:and 305:eIF6 301:aIF6 279:eIF2 275:aIF2 252:EF-P 229:IF-3 212:eIF1 208:aIF1 203:YciH 197:SUI1 173:IF-2 148:IF-1 95:mRNA 87:tRNA 83:eIF3 79:eIF2 75:eIF1 38:are 1045:IF3 1040:IF2 1035:IF1 892:PMC 884:doi 836:PMC 828:doi 789:doi 747:PMC 737:doi 696:doi 649:doi 612:PMC 604:doi 600:167 565:doi 515:doi 30:In 2622:: 2553:35 2548:34 2543:33 2538:32 2533:31 2528:30 2523:29 2518:28 2513:27 2508:26 2503:25 2498:24 2493:23 2488:22 2483:21 2478:20 2473:19 2468:18 2463:17 2458:16 2453:15 2448:14 2443:13 2438:12 2433:11 2428:10 2367:42 2362:41 2357:40 2352:39 2347:38 2342:37 2337:36 2332:35 2327:34 2322:33 2317:32 2312:31 2307:30 2302:29 2297:28 2292:27 2287:26 2282:25 2277:24 2272:23 2267:22 2262:21 2257:20 2252:19 2247:18 2242:17 2237:16 2232:15 2227:14 2222:13 2217:12 2212:11 2207:10 1990:, 1986:, 1598:P3 1593:P2 1588:P1 1566:A1 1451:5B 1368:E1 1000:, 996:, 988:: 900:. 890:. 880:48 878:. 874:. 858:^ 844:. 834:. 824:55 822:. 818:. 795:. 785:59 783:. 769:^ 755:. 745:. 733:72 731:. 727:. 704:. 692:10 690:. 686:. 663:. 655:. 643:. 620:. 610:. 598:. 594:. 571:. 561:39 559:. 535:^ 521:. 511:13 509:. 505:. 485:^ 471:. 449:^ 426:. 384:, 81:, 77:, 54:. 34:, 2603:/ 2423:9 2418:8 2413:7 2408:6 2403:5 2398:4 2393:3 2388:2 2202:9 2197:8 2192:7 2187:6 2182:5 2177:4 2172:3 2167:2 1994:) 1615:G 1610:E 1605:D 1583:B 1576:3 1571:2 1444:2 1412:H 1407:B 1400:3 1395:2 1390:1 1385:G 1378:3 1373:2 1361:3 1356:2 1351:1 1346:A 1324:M 1319:L 1314:K 1309:J 1304:I 1299:H 1294:G 1289:F 1284:E 1279:D 1274:C 1269:B 1264:A 1235:5 1230:4 1225:3 1220:2 1215:1 1159:Y 1142:B 1004:) 992:( 978:e 971:t 964:v 908:. 886:: 852:. 830:: 803:. 791:: 763:. 739:: 712:. 698:: 671:. 651:: 645:5 628:. 606:: 579:. 567:: 529:. 517:: 479:. 298:β€” 285:i 272:β€” 236:β€” 233:β€” 205:? 199:) 195:( 20:)

Index

Translation initiation
molecular biology
proteins
ribosome
translation
protein biosynthesis
repressors
activators
bacteria
eukaryotes
eIF1
eIF2
eIF3
tRNA
methionine
mRNA
domains
InterPro
Bacterial
Archaeal
Eukaryotic
IPR006196
IF-1
eIF1A
IPR015760
IF-2
eIF5B
IPR001950
SUI1
eIF1

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