User talk:Abigail Wood - Knowledge (XXG)

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tagging be reproduced by a query, in principle? Can it even be second-guessed by a query (i.e. simulated by a protocol which translates into SPARQL)? Homing in on the arcana, do the inclusion and filtering criteria translate into metadata? At some level they must, but are these metadata explicitly expressed in the articles themselves? The answer to that is surely "no" at this point, but can

792: 561: 335: 4171: 858:. There is likely to be a gap, even with the guideline, between conditions taken to be necessary but not sufficient, and conditions sufficient but not necessary, for candidate papers to be included. With around 10,000 recognised medical conditions in standard lists, being comprehensive is demanding. With all of these aspects of the task, ScienceSource will seek community help. 3899:. Loopless computation can be conceived of as a seamless forward march of spreadsheet columns, each determined by the content of previous ones. Very well: to do a backward audit, when now we are talking about Wikidata, we rely on integrity of data and its scrupulous sourcing: and clearcut case analyses. The MEDRS example forces attention on purge attempts such as 3064:. The ISCB aims to improve the communication of scientific knowledge to the public at large, and Knowledge (XXG) plays an increasingly important role in this communication; the ISCB Knowledge (XXG) Competition aims to improve the quality of Knowledge (XXG) articles relating to computational biology. Entries to the competition are open 1454:. The ISCB aims to improve the communication of scientific knowledge to the public at large, and Knowledge (XXG) plays an increasingly important role in this communication; the ISCB Knowledge (XXG) Competition aims to improve the quality of Knowledge (XXG) articles relating to computational biology. Entries to the competition are open 575:, with its eminently guessable hashtag, is upon us. We should be utterly grateful that in the past 12 months, so much data on which papers cite which other papers has been made open, and that Wikidata is playing its part in hosting it as "cites" statements. At the time of writing, there are 15.3M Wikidata items that can do that. 2137: 2837: 2148: 3510:

are fundamental for what could colloquially be called "moving data around the Web"; from which Wikidata benefits 24/7. So the fact that the Wikidata SPARQL endpoint at query.wikidata.org has a RESTful API means that, in lay terms, Wikidata content can be GOT from it. The programming involved, besides

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in 2014 wrote (link below) " : the "information architecture" of evidence based medicine (if you can tolerate such a phrase) is a chaotic, ad hoc, poorly connected ecosystem of legacy projects. In some respects the whole show is still run on paper, like it's the 19th century." Is there a Wikidatan in

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Some home truths: aggregation is not content management, if it falls short on reusability. The PDF file format is wedded to how humans read documents, not how machines ingest them. The salami-slicer is our friend in the current downloading of open access papers, but for a better metaphor, think about

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For the Wikidatan, a key point is that these matches, however carried out, add statements to Wikidata if, and naturally only if, there is a Wikidata property associated with the catalog. For everyone, however, the hands-on experience of deciding of what is a good match is an education, in a scholarly

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aims to improve the communication of scientific knowledge to the public at large, and Knowledge (XXG) plays an increasingly important role in this communication; the ISCB Knowledge (XXG) Competition aims to improve the quality of Knowledge (XXG) articles relating to computational biology. Entries to

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Looking ahead, the thirtieth birthday of the World Wide Web falls in 2019, and yet the ambition to make webpages routinely readable by machines can still seem an ever-retreating mirage. Wikidata should not only be helping Wikimedia integrate its projects, an ongoing process represented by Structured

2382:. Translation: scripting for automation, version control, data set matching and wrangling in the large, are on the agenda also for contemporary library work. Certainly there is some possible common ground here. Time to understand rather more about the motivations that operate in the library sector. 4280:

The human factor comes to bear through the front end, which combines a link to the HTML version of a paper, text mining results organised in drug and disease columns, and a SPARQL display of nearby drug and disease terms. Much software to develop and explain, so little time! Rather than telling the

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thanks for signing up as a participant in the 8th ISCB Knowledge (XXG) competition. I'm getting in touch with each participant now to let you know that the period for eligible edits has been extended, to 28th June 2019, eight weeks from now. On behalf of the organizers, I'd like to encourage you to

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GLAM ♥ data — what is a gallery, library, archive or museum without a catalogue? It follows that Wikidata must love librarians. Bibliography supports students and researchers in any topic, but open and machine-readable bibliographic data even more so, outside the silo. Cue the WikiCite initiative,

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From an encyclopedic point of view, lack of research also may mean lack of high-quality references: the core medical literature differs from primary research, since it operates by aggregating trials. This bibliographic deficit clearly hinders Knowledge (XXG)'s mission. The ScienceSource project is

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dates from 2009, with an update started in 2018. The concerns there include the corpus of papers used: how selected and filtered? Now that Wikidata has a 20.9 million item bibliography, one can at least pose questions. Each systematic review is a tagging opportunity for a bibliography. Could that

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These days mix'n'match can be used in numerous modes, from the relaxed gamified click through a catalog looking for matches, with prompts, to the fantastically useful and often demanding search across all catalogs. I'll type that again: you can search 1000+ datasets from the simple box at the top

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or polymathic modern handling of facts, one must perhaps take only tactful notice of tech's endemic problem with documentation, and absorb the insightful point that the code in APIs does articulate the customary procedures now in place on the cloud for getting information. As Owl explained to

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This maintenance issue is one example of where ScienceSource aims to help. Where the reference is to a scientific paper, its type of algorithm could give a pass/fail opinion on such references. It could assist patrollers of medical articles, therefore, with the templated references and more

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images. An item that has sitelinks but no illustrative image can be tested to see if the linked wikis have a suitable one. This works well for a volunteer who wants to add images at a reasonable scale, and a small amount of SPARQL knowledge goes a long way in producing checklists.

3258:, the reliable sources guideline used here for health information, hinges on the assumption that the usefully systematic reviews of biomedical literature can be recognised. Its nutshell summary, normally the part of a guideline with the highest density of common sense, allows 2350:

In fact there is a broad scope: "Open Knowledge Maps via SPARQL" and the "Sum of All Welsh Literature", identification of research outputs, Library.Link Network and Bibframe 2.0, OSCAR and LUCINDA (who they?), OCLC and Scholia, all these co-exist on the agenda. Certainly more

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draws a veil over hardware, but also, less obviously but more importantly, obscures such intellectual distinction as matters most in its use. Wikidata begins to allow tasks to be undertaken that were out of easy reach. The facility should not be taken as the real point.

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is that, firstly, the term itself needs considerable unpacking, because just being able to read material online is a poor relation of "open"; and secondly, trying to get Creative Commons license information into Wikidata shows up issues with classes of license (such as

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generally. There may be more to proper referencing than that, indeed: context, quite what the statement supported by the reference expresses, prominence and weight. For that kind of consideration, case studies can help. But an algorithm might help to clear the backlog.

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Entry to the competition is open internationally to students and trainees of any level, both as individuals and as groups. Prizes of up to $ 500 will be awarded to the best contributions as chosen by a judging panel of experts; these will be awarded at the

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It should be noted, though, that there are currently 53 Wikidata properties that link to Commons, of which P18 for the basic image is just one. WD-FIST prompts the user to add signatures, plaques, pictures of graves and so on. There are a couple of hundred

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query are superior in principle, by far, to existing keyword searches run over papers. Open access content should be managed into consistent HTML, something that is currently strenuous. The good news, such as it is, would be that much of it is already in

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from the University of Mannheim allows Zotero bibliographies to be exported to Wikidata, by item creation. With an extra feature to add statements, that route could lead to much development of the focus list (P5008) tagging on Wikidata, by WikiProjects.

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of properties linking to Commons does contain a few that concern video and audio files, and rather more for maps. But it contains gems such as P3451 for "nighttime view". Over 1000 of those on Wikidata, but as for so much else, there could be yet more.

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is what you need to get high-level code executed by a mainframe, an API out in the cloud somewhere offers a chance to perform operations on a remote server. For example, the multifarious bots active on Knowledge (XXG) have owners who exploit the

614:. The organisational problem of removing further skins from the onion, with sensible prioritisation, is certainly not insuperable. The CORE group (the bloggers in the LSE posting) has some answers, but actually not all that is needed for the 1088:

finds over 450 articles where there is at least one use of the template. Of course the template is merely suggesting there is a possible issue with the reliability of a reference. Deciding the truth of the allegation is another matter.

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stated as "bad data drives out good". Knowledge (XXG) and now Wikidata have been criticised on related grounds: what if their content, unattributed, is taken to have a higher standing than Wikimedians themselves would grant it? See

4093:. We encourage you to participate and make the most of this extended editing period! Remember, prizes of up to $ 500 will be awarded to the best contributions as chosen by a judging panel of experts; these will be awarded at the 2913:

does do a great job. Placeholders must be detected, and working with Wikidata is a good way to understand how having one statement as data can blind us to replacing it by a more accurate one. An example that is important to

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The review tool requires a log in on sciencesource.wmflabs.org, and an OAuth permission (bottom of a review page) to operate. It can be used in simple and more advanced workflows. Examples of queries for the latter are at

2844: 3206:, surveys of existing literature devoted typically to a definite question that aim to bring out scientific conclusions. They are principled in a way Wikipedians can appreciate, taking a critical view of their sources. 1608: 1612: 1611: 1607: 1606: 823:

The proposal includes downloading 30,000 open access papers, aiming (roughly speaking) to create a baseline for medical referencing on Knowledge (XXG). It leaves open the question of how these are to be chosen.

1064: 1613: 2108:, and if the number is large, it is still only 5% or so of items that have one. All such images are taken from Wikimedia Commons, which has 50 million media files. One key issue is how to expand the stock. 906: 356:, it works "to match entries in external catalogs to Wikidata". The total number of entries is now well into eight figures, and more are constantly being added: a couple of new catalogs each day is normal. 3877: 2408:, WikiCite 2018 program abstract, Christine Fernsebner Eslao of Harvard Library Information and Technical Services and Michelle Futornick, Linked Data for Production Program Manager at Stanford University 2841: 3858:, so prevalent here on Knowledge (XXG) as "can you give me a source for that?", and being prepared to deal with complicated analyses into specified subcases. Impatience expressed as a disdain for such 4266: 2620: 2619: 2616: 2615: 2180: 4269:

for reuse of its results, ScienceSource has a SPARQL query service, with look-and-feel exactly that of Wikidata's at query.wikidata.org. It also now has a custom front end, and its content can be

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skinning an onion, laboriously, 100 times with diminishing returns. There are of the order of 100 major publisher sites hosting open access papers, and the predominant offer there is still a PDF.

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he feels the gaps experienced both by editors and by users of Wikimedia content are inevitable. He would like to see a greater emphasis on reuse of content, not simply its volume.

4242:. This common ground is helping to convert an engineering concept into a movement. TDM generally has little enough connection with the Semantic Web, being instead in the orbit of 3912: 2618: 2358:

Wikimedians generally are not aware of the tech background that can be assumed, unless they are close to current training for librarians. A baseline definition is useful here: "

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being the respective languages). Talking to an API requires a bigger toolkit, which first means you have to recognise the tools in terms of what they can do. On the way to the

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Coming in from another angle, the "executive decision" is more glamorous; but the "administrative decision" should be admired for its command of facts. Think of the attitudes

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Knowledge (XXG) has now turned 18, so should act like as adult, as well as being treated like one. The Web itself turns 30 some time between March and November this year, per

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actually diminishes with the prolific progress of science publishing. No, it really doesn't scale. Wikimedia as movement can do something in such cases. We know from

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conference in Basel, Switzerland in July 2019. As in previous years, the ISCB encourages competition entries for contributions to Knowledge (XXG) in any language.

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conference in Basel, Switzerland in July 2019. As in previous years, the ISCB encourages competition entries for contributions to Knowledge (XXG) in any language.

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conference in Basel, Switzerland in July 2019. As in previous years, the ISCB encourages competition entries for contributions to Knowledge (XXG) in any language.

3057: 1447: 2923:) standing for the actual license in major repositories. Detailed investigation shows that "everything flows" exacerbates the issue. But Wikidata can solve it. 2840: 4336:

Please be aware that this is a research project in development, and may have outages for planned maintenance. That will apply for the next few days, at least.

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In an ideal world ... no, bear with your editor for just a minute ... there would be a format for scientific publishing online that was as much a standard as

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Go on. Today is Wikidata's birthday. An illustrative image is always an acceptable gift, so why not add one? You can follow these easy steps: (i) log in at

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will have to be handled, and the premature exclusion of publications that would be in those marginal positions would reduce the value of the collection.

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Magic words, such as occur in fantasy stories, are wishful (rather than RESTful) solutions to gaining access. You may need to be a linguist to enter

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these days means a disease not rare, but tropical, and most often infectious or parasitic. Rare diseases as a group are dominated, in contrast, by

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I look forward to seeing you about the MCB and CompBio pages. On an additional note, I can recommend this slightly more in-depth tutorial series:

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area, biographical catalogs being particularly fraught. Underpinning recent rapid progress is an open infrastructure for scraping and uploading.

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puts that issue down to "heterogeneity". A useful euphemism to save us from thinking that the whole concept doesn't fall into the realm of the

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is coming Wikidata's way. That poses the question about the other direction: is more Wikimedia technology advancing on libraries? Good point.

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or by typing four tildes (~~~~); this will automatically produce your username and the date. Also, please do your best to always fill in the

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Please pass this invitation on to your students! We also encourage you to consider using the competition as part of an in-class assignment.

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Please pass this invitation on to your students! We also encourage you to consider using the competition as part of an in-class assignment.

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Please pass this invitation on to your students! We also encourage you to consider using the competition as part of an in-class assignment.

2955: 1863:. Where scientific papers are delivered as XML downloads, you get all the ingredients ready to cook. But have to prepare the actual meal of 1651:

are those developed to treat rare diseases (rare enough not to have market-driven research), but there is some overlap in practice with the

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platform. Quote: "Disambiguating and merging individuals across multiple datasets is nearly impossible given their current, siloed nature."

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are for the content. Likewise cataloguing publications would not be onerous, because part of the process would be to generate uniform

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We encourage you to pass this invitation on to your students, and consider using the competition as part of an in-class assignment.

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The ScienceSource wiki main page carries information on practical matters. Email is not enabled on the wiki: use site mail here to

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can redress the picture. It comes with the claim to be "the first ever conference about centering marginalized knowledge online".

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papers in the large, though, there is is less reason for celebration. Access in theory does not yet equate to practical access. A

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Find out how @TheContentMine are attempting to mine scientific and medical literature to improve the accuracy of Knowledge (XXG).

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enters its second year, with a Cambridge Blue (OK, Aquamarine) background, a new logo, but no Cambridge blues. On-topic for the

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Alberto Martín-Martín, Enrique Orduna-Malea, Mike Thelwall, Emilio Delgado López-Cózar, arxiv.org, submitted on 15 August 2018

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site. It strives for compliance of its fact mining, on drug treatments of diseases, with an automated form of the relevant

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Most likely it would, but the arcana of systematic reviews and how they add value would still need formal handling. The

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for short, is used to express dissatisfaction with particular references. Technology can help with patrolling, and this

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community, and growing networks around other approaches that can integrate datasets into Wikidata, such as the use of

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exploits the fact that each Knowledge (XXG) is differently illustrated, mostly with images from Commons but also with

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Write a Zotero translator and document process for creating new Zotero translator and getting it live in production

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for you, they may be able to answer the question "is the Pope Catholic?" Possibly by asking for disambiguation (

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There is also a large-scale encyclopedic dimension here. The construction of Zotero translators is one facet of

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If you wish to opt-out of future mailings from WikiProject Computational Biology, please remove yourself from

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If you wish to opt-out of future mailings from WikiProject Computational Biology, please remove yourself from

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or API is 50 years old, and refers to a type of software library as well as the interface to its use. While a

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If you wish to opt-out of future mailings from WikiProject Computational Biology, please remove yourself from

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If you wish to opt-out of future mailings from WikiProject Computational Biology, please remove yourself from

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guideline, for the referencing of articles at all related to human health, is applied in typical discussions.

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which is no respecter of the semantic. Don't break a taboo by asking bots "and what do you mean by that?"

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Around 2.7 million Wikidata items have an illustrative image. These files, you might say, are Wikimedia's

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Google Scholar, Web of Science, and Scopus: a systematic comparison of citations in 252 subject categories

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Around the time in February when Wikidata clicked past item Q50000000, another milestone was reached: the

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What gets clouded out is not impossibly hard to understand. You do need to put together the insights of

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take much of their data from Knowledge (XXG), one way or another. So as well as getting Spotify to play

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at WD:SSFL is trying to ensure that neglect does not turn into bias in its selection of science papers.

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and then there are "neglected diseases". Evidently a rare enough disease is likely to be neglected, but

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are now familiar, but the unannounced circulation of information raises other issues. One of those is

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Knowledge (XXG):WikiProject Computational Biology/8th ISCB Knowledge (XXG) competition announcement

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Knowledge (XXG):WikiProject Computational Biology/8th ISCB Knowledge (XXG) competition announcement

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Knowledge (XXG):WikiProject Computational Biology/8th ISCB Knowledge (XXG) competition announcement

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Knowledge (XXG):WikiProject Computational Biology/8th ISCB Knowledge (XXG) competition announcement

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qualifies that indication heavily. Process wonkery about systematic reviews definitely has merit.

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for a recent pass at heading off XML with HTML, in other words in the native language of the Web.

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is a traditional mixture of frictional forces, vested interests, and the classic irony of the

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right. The drop-down menu top left offers "creation candidates", Magnus's personal favourite.

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Knowledge (XXG):WikiProject Academic Journals/Journals cited by Knowledge (XXG)/Questionable1

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for the usual quip about "law and sausages", and why one shouldn't watch them in the making.

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to implement it. Besides face-to-face interactions, Wikimedians do need their power sources.

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in case of difficulty, or if you need support. Further explanatory videos will be put into

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In Europe, Scientists Need to Share Their Research for Free if They Want Government Funding

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blogpost 25 May 2018, second chance this year to participate in referencing Knowledge (XXG)

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to extract Creative Commons license information from PubMed Central pages, created at the

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that has a strong community and open source basis. In that it resembles the less formal

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make the most of this extended editing period: as a reminder, your claimed article is

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Crossref as a new source of citation data: A comparison with Web of Science and Scopus

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workshop for ContentMine 23 March 2019, with systematic review process diagram. Also

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More than 5,000 German scientists have published papers in pseudo-scientific journals

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From the discoverability angle, Wikidata's bibliographic resources combined with the

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Besides the handiness of Zotero's warehousing of personal citation collections, the

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Knowledge (XXG)'s upcoming Cape Town conference will tackle the issue of diversity

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of diseases that receive less current research. The MEDRS guideline supposes that

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include a concentration on secondary literature. Attention has to be given to the

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Knowledge (XXG):Wikipedia_Signpost/2019-03-31/In focus#The_Wikipedia_SourceWatch

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Wikimedia Foundation and Kiwix partner to grow offline access to Knowledge (XXG)

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Two well-known but rather different areas where such considerations apply are

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brings you ScienceSource links, starting from the how-to video, lower right.

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Knowledge (XXG) goes 3D allowing users to upload .STLs for digital reference

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It's time for a two-year summation of ContentMine projects involving TDM (

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Text mining display of noun phrases from the US Presidential Election 2012

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Actually these questions lack originality. It should be noted though that

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which was meeting in conference this week, in the Bay Area of California.

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Officially it is "bridging the gaps in knowledge", with Wikimania 2018 in

1233: 1023: 926: 703: 472: 360: 4254: 3859: 3535: 3523: 3491: 2133: 1970: 1856: 1845: 1841: 587: 3605:, mediawiki.org page on the API for access to "recent changes" on a wiki 2688: 2603: 2582: 1868: 946:. ScienceSource pages will be announced there, and in this mass message. 439:, Nancy Cooey, United States Holocaust Memorial Museum, February 12 2018 2902: 2658: 572: 452:

Back to the future: Does graph database success hang on query language?

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ScienceSourceReview, introductory video: but you need run it from the

2595: 2112: 1939: 1930: 1687: 1129: 352: 3962: 3584: 3512: 3280:, resources page from Duke University Medical Library & Archives. 2564: 2375: 1693: 606: 4262: 4037:. If you've any questions or comments, I'd be happy to read them on 2968:, Martin Poulter blogpost, 24 January 2019, Bodleian Digital Library 2634: 2447: 943: 720: 489: 3587:, with a software engineer's view on Wikibase and the MediaWiki API 3580: 3306: 2426: 1717: 1703:

Where do Mayors Come From: Querying Wikidata with Python and SPARQL

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tool uploaded its 1000th dataset. Concisely defined by its author,

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2011 photograph by Bernard Schittny of the "Legacy Projects" group

3208: 2920: 2835: 2612: 2581: 2341: 2204: 2165: 2122: 1603: 1592: 1313: 1278: 1095: 899: 890:, May update allows wrangling of tabular information into Wikidata 865: 628:. But the real knack is to do more between the XML and the heart. 596: 436:

Using Wikidata to build an authority list of Holocaust-era ghettos

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on your talk page and ask your question there. Please remember to

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Hello, this is to let you know that the editing deadline for the

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Timeline of discoveries of natural satellites in the solar system

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misses the point that gate-keeping will be done by an algorithm.

3961:, metadata for biomedical articles being built up, sourced from 3563: 2891: 1985:, detailed slide pack by Heiko Paulheim, University of Mannheim. 1136: 1118:

World Cup scorers bubble chart, by the league in which they play

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Leveraging Knowledge (XXG): Connecting Communities of Knowledge

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Citations with identifiers in Knowledge (XXG), figshare dataset

4063: 3945:: query to find items on Wikidata for articles subject to the 3673: 3033: 2363: 2217:

to map the London Underground system, whizzed past on Twitter.

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August 6, 2018, by Karen Smith-Yoshimura on OCLC Research blog

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d:Wikidata_talk:ScienceSource project/Queries#SS_disease_list

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Wikidata as a semantic framework for the Gene Wiki initiative

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service in voice search showdown with the Google rival on an

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Olivia Colman reveals struggle with Knowledge (XXG) over age

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4800 Welsh portraits added to Wikimedia Commons and Wikidata

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Formal publication and announcement of ISBN citation dataset

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8th ISCB Knowledge (XXG) Competition: entries closing soon!

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8th ISCB Knowledge (XXG) Competition: entries closing soon!

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of PRISMA, for registration of systematic review protocols.

2575:. It is also an active user community, and has broad-based 1982:

Machine Learning with and for Semantic Web Knowledge Graphs

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Newspapers On Knowledge (XXG) Update: Initial Wikidata Pass

408:, Beau Jackson for 3dprintingindustry.com, February 22 2018 4330:

d:Wikidata_talk:ScienceSource_project/Queries#NDF-RT issue

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innovates in TDM, by storing its text mining results in a

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the house? Wouldn't some machine-readable content that is

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and its subcategories provide rich scope for adding more.

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8th ISCB Knowledge (XXG) competition: deadline extended!

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8th ISCB Knowledge (XXG) Competition: deadline extended!

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d:Wikidata:ScienceSource project/NCBI2wikidata dashboard

878:, Wikidata's multi-lingual dictionary project gets going 48:

to this 💕. If you decide that you need help, check out

4196:. Please leave feedback for him, on his User talk page. 3811:. Please leave feedback for him, on his User talk page. 3419:. Please leave feedback for him, on his User talk page. 3302:

How do scientific discoveries become clinical medicine?

3174:. Please leave feedback for him, on his User talk page. 2794:. Please leave feedback for him, on his User talk page. 2539:. Please leave feedback for him, on his User talk page. 2313:. Please leave feedback for him, on his User talk page. 2079:. Please leave feedback for him, on his User talk page. 1949: 1808:. Please leave feedback for him, on his User talk page. 1568:. Please leave feedback for him, on his User talk page. 1241:. Please leave feedback for him, on his User talk page. 1031:. Please leave feedback for him, on his User talk page. 803:

The Wikimedia Foundation announced full funding of the

1134:, National Library of Wales blogpost 27 June 2018, by 813:

ScienceSource Twitter announcement and 60 second video

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for tickets, taking place in Makespace, 16 Mill Lane.

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File:Schittny, Facing East, 2011, Legacy Projects.jpg

1663:, a "neglected public health issue", is on the list. 652:

Making women more visible online—with Wikidata tools!

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