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Molecule mining

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36: 210:- is a Java-based software library for calculating Maximum Common Subgraph (MCS) between small molecules. This will help us to find similarity/distance between two molecules. MCS is also used for screening drug like compounds by hitting molecules, which share common subgraph ( 1548:
A. Micheli, A. Sperduti, A. Starita, A. M. Bianucci (2001). "Analysis of the Internal Representations Developed by Neural Networks for Structures Applied to Quantitative Structure-Activity Relationship Studies of Benzodiazepines".
995:
Helma C., Cramer T., Kramer S., de Raedt L. (2004). "Data Mining and Machine Learning Techniques for the Identification of Mutagenicity Inducing Substructures and Structure Activity Relationships of Noncongeneric Compounds".
1314:
Mazzatorta P., Tran L., Schilter B., Grigorov M. (2007). "Integration of Structure-Activity Relationship and Artificial Intelligence Systems To Improve in Silico Prediction of Ames Test Mutagenicity".
383:
Fröhlich H., Wegner J. K., Zell A. (2006). "Kernel Functions for Attributed Molecular Graphs - A New Similarity Based Approach To ADME Prediction in Classification and Regression".
1670: 1594: 1472: 1349: 1300: 1031: 981: 821: 742: 677: 583: 534: 505: 410: 1783: 1445:
I. I. Baskin, V. A. Palyulin, N. S. Zefirov (1997). "A Neural Device for Searching Direct Correlations between Structures and Properties of Organic Compounds".
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A. M. Bianucci; Micheli, Alessio; Sperduti, Alessandro; Starita, Antonina (2000). "Application of Cascade Correlation Networks for Structures to Chemistry".
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H. Kashima, K. Tsuda, A. Inokuchi, Marginalized Kernels Between Labeled Graphs, The 20th International Conference on Machine Learning (ICML2003), 2003. PDF
197: 1794: 114:. The main problem is how to represent molecules while discriminating the data instances. One way to do this is chemical similarity 944:
Deshpande M., Kuramochi M., Wale N., Karypis G. (2005). "Frequent Substructure-Based Approaches for Classifying Chemical Compounds".
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Typical approaches to calculate chemical similarities use chemical fingerprints, but this loses the underlying information about the
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A. Goulon, T. Picot, A. Duprat, G. Dreyfus (2007). "Predicting activities without computing descriptors: Graph machines for QSAR".
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Wegner J. K., Fröhlich H., Mielenz H., Zell A. (2006). "Data and Graph Mining in Chemical Space for ADME and Activity Data Sets".
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Mahe P., Ralaivola L., Stoven V., Vert J. (2006). "The pharmacophore kernel for virtual screening with support vector machines".
60: 1799: 1080: 51: 207: 1426: 519:
P. Mahé, N. Ueda, T. Akutsu, J.-L. Perret and P. Vert, J.-P. (2004). "Extensions of marginalized graph kernels".
1774: 1821: 310: 1769: 1761:- is a Java-based software library for calculating Maximum Common Subgraph (MCS) between small molecules. 1558: 1363:
Wale N., Karypis G. "Comparison of Descriptor Spaces for Chemical Compound Retrieval and Classification".
908: 130: 111: 1789: 1664: 1588: 1466: 1343: 1294: 1025: 975: 815: 736: 671: 577: 548:
L. Ralaivola, S. J. Swamidass, S. Hiroto and P. Baldi (2005). "Graph kernels for chemical informatics".
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Proceedings of the 2002 IEEE International Conference on Data Mining (ICDM 2002), IEEE Computer Society
1831: 1179:, Proceedings of the Third International Workshop on Mining Graphs, Trees and Sequences (MGTS-2005), 779: 463: 126: 115: 1563: 913: 46: 211: 369:, The 22nd International Conference on Machine Learning (ICML 2005), Omnipress, Madison, WI, USA, 1652: 1530: 1243: 1111: 926: 803: 632: 606: 487: 453: 1486:
D. B. Kireev (1995). "ChemNet: A Novel Neural Network Based Method for Graph/Property Mapping".
838:, 4th International Conference on Knowledge Discovery and Data Mining, AAAI Press., 1998, 30-36. 1742: 1724: 1706: 1644: 1576: 1331: 1282: 1235: 1101: 1013: 899:
Kuramochi M., Karypis G. (2004). "An Efficient Algorithm for Discovering Frequent Subgraphs".
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O. Ivanciuc (2001). "Molecular Structure Encoding into Artificial Neural Networks Topology".
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2004 IEEE International Conference on Systems, Man and Cybernetics (IEEE Cat. No. 04CH37583)
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King R. D., Srinivasan A., Dehaspe L. (2001). "Wamr: a data mining tool for chemical data".
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Application of Kernel Functions for Accurate Similarity Search in Large Chemical Databases
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Ando H., Dehaspe L., Luyten W., Craenenbroeck E., Vandecasteele H., Meervelt L. (2006).
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Algorithms on Strings, Trees, and Sequences: Computer Science and Computational Biology
1132:, Proceedings of the 2004 IEEE Conference on Systems, Man & Cybernetics (SMC2004), 719: 692: 320: 203: 1815: 1215: 597:
P. Mahé and J.-P. Vert (2009). "Graph kernels based on tree patterns for molecules".
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A. Gago Alonso, J.E. Medina Pagola, J.A. Carrasco-Ochoa and J.F. Martínez-Trinidad
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Rahman S. A., Bashton M., Holliday G. L., Schrader R., Thornton J. M. (2009).
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Applying the Apriori-based Graph Mining Method to Mutagenesis Data Analysis
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The article is just lists. The reason for each list needs an introduction.
922: 129:. Mining the molecular graphs directly avoids this problem. So does the 99: 1499: 966: 1786:- Java - Open source - Distributed mining - Benchmark algorithm library 1572: 1458: 1327: 1278: 1231: 1009: 611: 475: 458: 427:, International Joint Conference on Neural Networks 2005 (IJCNN'05), 1046:
Discriminative Closed Fragment Mining and Perfect Extensions in MoFa
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5th International Workshop on Mining and Learning with Graphs, 2007
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Mining Connected Subgraph Mining Reducing the Number of Candidates
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Frequent Graph Mining and its Application to Molecular Databases
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kernels based on pharmacophores for 3D structure of molecules
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Xiaohong Wang, Jun Huan, Aaron Smalter, Gerald Lushington,
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Data mining the yeast genome in a lazy functional language
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Optimal Assignment Kernels For Attributed Molecular Graphs
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Baskin, I. I.; V. A. Palyulin; N. S. Zefirov (1993). "".
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Extension and parallelization of a graph-mining-algorithm
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Mining Fragments with Fuzzy Chains in Molecular Databases
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Methods based on special architectures of neural networks
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A Fast Algorithm for Mining Frequent Connected Subgraphs
98:, or extracting and discovering patterns, as applied to 1061:
T. Meinl, C. Borgelt, M. R. Berthold, M. Philippsen,
1808:- Software for generating fragment-based descriptors 836:
Finding frequent substructures in chemical compounds
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the marginalized graph kernel between labeled graphs
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IEEE Transactions on Knowledge and Data Engineering
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IEEE Transactions on Knowledge and Data Engineering
1795:Molecule mining (advanced chemical expert systems) 1216:"SMIREP: predicting chemical activity from SMILES" 864:A. Inokuchi, T. Washio, K. Nishimura, H. Motoda, 693:"Small Molecule Subgraph Detector (SMSD) toolkit" 1775:Molecule mining (basic chemical expert systems) 257:ParMol (contains MoFa, FFSM, gSpan, and Gaston) 1194:gSpan: Graph-Based Substructure Pattern Mining 847:A. Inokuchi, T. Washio, T. Okada, H. Motoda, 118:, which has a long tradition in the field of 8: 1669:: CS1 maint: multiple names: authors list ( 1593:: CS1 maint: multiple names: authors list ( 1471:: CS1 maint: multiple names: authors list ( 1348:: CS1 maint: multiple names: authors list ( 1299:: CS1 maint: multiple names: authors list ( 1145:C. Helma, Predictive Toxicology, CRC Press, 1030:: CS1 maint: multiple names: authors list ( 980:: CS1 maint: multiple names: authors list ( 820:: CS1 maint: multiple names: authors list ( 741:: CS1 maint: multiple names: authors list ( 676:: CS1 maint: multiple names: authors list ( 582:: CS1 maint: multiple names: authors list ( 533:: CS1 maint: multiple names: authors list ( 504:: CS1 maint: multiple names: authors list ( 409:: CS1 maint: multiple names: authors list ( 133:which is preferable for vectorial mappings. 868:, IBM Research, Tokyo Research Laboratory, 1081:"Hybrid fragment mining with MoFa and FSG" 1562: 965: 912: 757:"Small Molecule Subgraph Detector (SMSD)" 718: 708: 610: 457: 425:Assignment Kernels For Chemical Compounds 102:. Since molecules may be represented by 79:Learn how and when to remove this message 27:Data mining for patterns in molecule data 1686:Schölkopf, B., K. Tsuda and J. P. Vert: 439: 437: 1759:Small Molecule Subgraph Detector (SMSD) 1688:Kernel Methods in Computational Biology 1177:Optimizing gSpan for Molecular Datasets 352: 350: 346: 1662: 1629:SAR and QSAR in Environmental Research 1586: 1464: 1341: 1292: 1044:T. Meinl, C. Borgelt, M. R. Berthold, 1023: 973: 813: 734: 669: 575: 526: 497: 402: 176:extensions of the marginalized kernel 7: 1610:Roumanian Chemical Quarterly Reviews 423:H. Fröhlich, J. K. Wegner, A. Zell, 365:H. Fröhlich, J. K. Wegner, A. Zell, 182:graph kernels based on tree patterns 1162:, Friedrich-Alexander-Universität, 1092:. Vol. 5. pp. 4559–4564. 1079:Meinl, T.; Berthold, M. R. (2004). 853:Journal of Computer Aided Chemistry 1697:R.O. Duda, P.E. Hart, D.G. Stork, 25: 1735:Handbook of Molecular Descriptors 1214:Karwath A., Raedt L. D. (2006). 34: 834:L. Dehaspe, H. Toivonen, King, 1719:, Cambridge University Press, 106:, this is strongly related to 1: 1733:R. Todeschini, V. Consonni, 1690:, MIT Press, Cambridge, MA, 562:10.1016/j.neunet.2005.07.009 521:Proceedings of the 21st ICML 192:Maximum common graph methods 1784:master thesis documentation 54:. The specific problem is: 1848: 1427:Doklady Akademii Nauk SSSR 1098:10.1109/ICSMC.2004.1401250 697:Journal of Cheminformatics 168:C++ (and R) implementation 50:to meet Knowledge (XXG)'s 1790:TU München - Kramer group 1701:, John Wiley & Sons, 1641:10.1080/10629360601054313 1551:J. Chem. Inf. Comput. Sci 1488:J. Chem. Inf. Comput. Sci 1447:J. Chem. Inf. Comput. Sci 998:J. Chem. Inf. Comput. Sci 621:10.1007/s10994-008-5086-2 161:Optimal assignment kernel 1800:DMax Chemistry Assistant 772:J. Comput.-Aid. Mol. Des 311:Molecular Query Language 1827:Computational chemistry 1527:10.1023/A:1008368105614 1128:S. Nijssen, J. N. Kok. 792:10.1023/A:1008171016861 228:Molecular query methods 1699:Pattern Classification 881:A. Clare, R. D. King, 710:10.1186/1758-2946-1-12 664:10.1002/qsar.200510009 397:10.1002/qsar.200510135 112:structured data mining 1802:- commercial software 1410:Vol. 11 (Suppl 3):S8 958:10.1109/tkde.2005.127 336:partition coefficient 316:Chemical graph theory 1515:Applied Intelligence 1175:K. Jahn, S. Kramer, 923:10.1109/tkde.2004.33 164:Pharmacophore kernel 131:inverse QSAR problem 61:improve this article 1500:10.1021/ci00024a001 1387:Proc. of ECML--PKDD 1316:J. Chem. Inf. Model 784:2001JCAMD..15..173K 468:2006q.bio.....3006M 431:, 913-918. CiteSeer 1408:BMC Bioinformatics 855:, 2001;, 2, 87-92. 206:Subgraph Detector 94:is the process of 1770:Overview for 2006 1573:10.1021/ci9903399 1459:10.1021/ci940128y 1328:10.1021/ci600411v 1279:10.1021/mp060034z 1232:10.1021/ci060159g 1010:10.1021/ci034254q 476:10.1021/ci060138m 127:molecule topology 89: 88: 81: 52:quality standards 43:This article may 16:(Redirected from 1839: 1675: 1674: 1668: 1660: 1635:(1–2): 141–153. 1624: 1618: 1617: 1605: 1599: 1598: 1592: 1584: 1566: 1545: 1539: 1538: 1521:(1–2): 117–146. 1510: 1504: 1503: 1483: 1477: 1476: 1470: 1462: 1442: 1436: 1435: 1421: 1415: 1400: 1394: 1379: 1373: 1372: 1360: 1354: 1353: 1347: 1339: 1311: 1305: 1304: 1298: 1290: 1258: 1252: 1251: 1226:(6): 2432–2444. 1220:J Chem Inf Model 1211: 1205: 1192:X. Yan, J. Han, 1190: 1184: 1173: 1167: 1156: 1150: 1143: 1137: 1126: 1120: 1119: 1085: 1076: 1070: 1059: 1053: 1042: 1036: 1035: 1029: 1021: 1004:(4): 1402–1411. 992: 986: 985: 979: 971: 969: 952:(8): 1036–1050. 941: 935: 934: 916: 907:(9): 1038–1051. 896: 890: 879: 873: 862: 856: 845: 839: 832: 826: 825: 819: 811: 767: 761: 760: 753: 747: 746: 740: 732: 722: 712: 688: 682: 681: 675: 667: 647: 641: 640: 614: 599:Machine Learning 594: 588: 587: 581: 573: 556:(8): 1093–1110. 545: 539: 538: 532: 524: 516: 510: 509: 503: 495: 461: 452:(5): 2003–2014. 446:J Chem Inf Model 441: 432: 421: 415: 414: 408: 400: 380: 374: 363: 357: 354: 179:Tanimoto kernels 104:molecular graphs 84: 77: 73: 70: 64: 38: 37: 30: 21: 1847: 1846: 1842: 1841: 1840: 1838: 1837: 1836: 1822:Cheminformatics 1812: 1811: 1755: 1683: 1681:Further reading 1678: 1661: 1626: 1625: 1621: 1607: 1606: 1602: 1585: 1564:10.1.1.137.2895 1547: 1546: 1542: 1512: 1511: 1507: 1485: 1484: 1480: 1463: 1444: 1443: 1439: 1423: 1422: 1418: 1401: 1397: 1389:, pp. 365–376, 1380: 1376: 1362: 1361: 1357: 1340: 1313: 1312: 1308: 1291: 1260: 1259: 1255: 1213: 1212: 1208: 1191: 1187: 1174: 1170: 1157: 1153: 1144: 1140: 1127: 1123: 1108: 1083: 1078: 1077: 1073: 1060: 1056: 1043: 1039: 1022: 994: 993: 989: 972: 943: 942: 938: 914:10.1.1.107.3913 898: 897: 893: 880: 876: 863: 859: 846: 842: 833: 829: 812: 769: 768: 764: 755: 754: 750: 733: 690: 689: 685: 668: 649: 648: 644: 596: 595: 591: 574: 550:Neural Networks 547: 546: 542: 525: 518: 517: 513: 496: 443: 442: 435: 422: 418: 401: 382: 381: 377: 364: 360: 355: 348: 344: 307: 285: 260:optimized gSpan 230: 225: 222: 219:Coding(Molecule 194: 152: 147: 144: 140: 137:Coding(Molecule 120:cheminformatics 92:Molecule mining 85: 74: 68: 65: 58: 39: 35: 28: 23: 22: 18:Molecule kernel 15: 12: 11: 5: 1845: 1843: 1835: 1834: 1829: 1824: 1814: 1813: 1810: 1809: 1803: 1797: 1792: 1787: 1777: 1772: 1767: 1762: 1754: 1753:External links 1751: 1750: 1749: 1731: 1715:Gusfield, D., 1713: 1695: 1682: 1679: 1677: 1676: 1619: 1600: 1557:(1): 202–218. 1540: 1505: 1494:(2): 175–180. 1478: 1453:(4): 715–721. 1437: 1416: 1395: 1374: 1355: 1306: 1273:(6): 665–674. 1253: 1206: 1185: 1168: 1151: 1138: 1121: 1106: 1071: 1054: 1037: 987: 936: 891: 874: 857: 840: 827: 778:(2): 173–181. 762: 748: 683: 658:(3): 205–220. 652:QSAR Comb. 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Wörlein, 1154: 1146: 1141: 1133: 1129: 1124: 1088: 1074: 1066: 1062: 1057: 1049: 1045: 1040: 1026:cite journal 1001: 997: 990: 976:cite journal 967:11299/215559 949: 945: 939: 904: 900: 894: 886: 882: 877: 869: 865: 860: 852: 848: 843: 835: 830: 816:cite journal 775: 771: 765: 751: 737:cite journal 700: 696: 686: 672:cite journal 655: 651: 645: 602: 598: 592: 578:cite journal 553: 549: 543: 529:cite journal 520: 514: 500:cite journal 449: 445: 428: 424: 419: 405:cite journal 388: 384: 378: 370: 366: 361: 212:substructure 157:graph kernel 124: 108:graph mining 91: 90: 75: 66: 59:Please help 55: 44: 1832:Data mining 605:(1): 3–35. 269:SAm/AIm/RHC 96:data mining 63:if you can. 1816:Categories 1616:: 197–220. 1371:: 678–689. 1204:, 721-724. 523:: 552–559. 342:References 170:combining 1559:CiteSeerX 1267:Mol Pharm 909:CiteSeerX 703:(1): 12. 629:0885-6125 248:MoFa/MoSS 141:,Molecule 100:molecules 1657:11759797 1649:17365965 1581:11206375 1535:10031212 1336:17238246 1287:17140254 1240:17125185 1018:15272848 800:11272703 729:20298518 570:16157471 492:15060229 484:16995731 305:See also 239:PolyFARM 45:require 1248:1460089 1116:3248671 808:3055046 780:Bibcode 720:2820491 637:5943581 464:Bibcode 291:ChemNet 116:metrics 47:cleanup 1780:ParMol 1745:  1727:  1709:  1655:  1647:  1579:  1561:  1533:  1334:  1285:  1246:  1238:  1114:  1104:  1016:  931:242887 929:  911:  806:  798:  727:  717:  635:  627:  568:  490:  482:  297:MolNet 278:G-Hash 263:SMIREP 251:Gaston 245:MolFea 208:(SMSD) 1806:AFGen 1653:S2CID 1531:S2CID 1244:S2CID 1166:. 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Index

Molecule kernel
cleanup
quality standards
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Learn how and when to remove this message
data mining
molecules
molecular graphs
graph mining
structured data mining
metrics
cheminformatics
molecule topology
inverse QSAR problem
graph kernel
C++ (and R) implementation
MCS
Small Molecule
(SMSD)
substructure
Molecular Query Language
Chemical graph theory
Chemical space
QSAR
ADME
partition coefficient


doi
10.1002/qsar.200510135

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