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Copper protein

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477:, which is 5 x 10 M.sec compared to the blue copper protein which is between 1ms and 01μs. Upon electron transfer the oxidized Cu state at the blue copper protein active site will be minimized because the Jahn-Teller effect is minimized. The distorted geometry prevents Jahn-Teller distortion. The orbital degeneracy is removed due to the asymmetric ligand field. The asymmetric ligand field is influenced by the strong equatorial cysteine ligand and the weak axial methionine ligand. In Figure 2, an energy level diagram shows three different relevant geometries and their d-orbital splitting and the Jahn-Teller effect is shown in blue. (i) shows the tetrahedral geometry energy level diagram with a that is degenerate. The tetrahedral structure can undergo Jahn-Teller distortion because of the degenerate orbitals. (ii) shows the C 274:”, which means a protein can perform more than one function. They serve as electron transfer agents, with the active site shuttling between Cu(I) and Cu(II). The Cu in the oxidized state can accept one electron to form Cu in the reduced protein. The geometry of the Cu center has a major impact on its redox properties. The Jahn-Teller distortion does not apply to the blue copper proteins because the copper site has low symmetry that does not support degeneracy in the d-orbital manifold. The absence of large reorganizational changes enhances the rate of their electron transfer. The active site of a type-I blue copper protein. Two 2-histidines, 1 methionine and 1 cysteine present in the coordination sphere. Example for Type-I blue copper protein are 322: 461: 388:
showed that both bands have the same polarization ratio that associated with Cu(II)-S(Cys) bond. This is explained that the normal cupric complex has high energy intense sigma and low energy weak π bonds. However, in the blue copper protein case have low energy intense sigma and high energy weak π
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geometry with a longer thioester bond and a subsequently shorter thiolate bond. This is the proper geometry of the blue copper protein. This shows that there is no presence of the Jahn-Teller effect. The energy diagram shows that the asymmetry of the short Cu-S(Cys) bond and the highly distorted
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will be formed due to the strong equatorial cysteine ligand and the weak axial methionine ligand. The two neutral histidine ligands are positioned by the protein ligand so the geometry is distorted tetrahedral. This will cause them not to be able to coordinate perfectly as tetrahedral or a square
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as they also identify as Type 1 copper proteins. They are also similar to one another due to the geometry of the copper site of each copper protein. The protein azurin has a trigonal bipyramidal geometry with elongated axial glycine and methoinione sulfur ligands. Plastocyanins have an additional
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Lowering the temperature may change the transitions. The intense absorbance at about 16000 cm was characterized the absorptions feature of blue copper. There was a second lower energy feature band with moderate absorption intensity. Polarized signal-crystal absorption data on
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consist of a pair of copper centres, each coordinated by three histidine residues. These proteins exhibit no EPR signal due to strong antiferromagnetic coupling (i.e. spin pairing) between the two S = 1/2 metal ions due to their covalent overlap with a
144:), which usually gives rise to a blue colour. Cupredoxins are therefore often called "blue copper proteins". This may be misleading, since some T1Cu centres also absorb around 460 nm and are therefore green. When studied by 132:
residue). T1Cu-containing proteins are usually called "cupredoxins", and show similar three-dimensional structures, relatively high reduction potentials (> 250 mV), and strong absorption near 600 nm (due to
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in the parallel region similar to that observed in regular copper coordination compounds. Since no sulfur ligation is present, the optical spectra of these centres lack distinctive features. T2Cu centres occur in
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Arcos-LĂłpez, Trinidad; Schuth, Nils; Quintanar, Liliana (2020), "Chapter 3: The Type 1 Blue Copper Site: From Electron Transfer to Biological Function", in Sosa Torres, Martha E.; Kroneck, Peter M.H. (eds.),
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geometry was formed by the elongated methionine thioether bond at the reduced site. The unpaired electrons leads to the Jahn-Teller effect. (iii) shows the ground state energy level splitting diagram of the
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Cu-L bond angles causes the degeneracy of the orbitals to be removed and thereby removing the Jahn-Teller effect, which is due to the weak donor at an Cu-S(Met) and strong donor at Cu-S(Met).
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methionine sulfur ligand on the axial position. The main difference of each copper protein is that each protein has different number and species of ligand coordinated to the copper center.
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The strong bond between the copper ion and the cysteine sulfur allows for the non-bonded electron on the cysteine sulfur to be present on both the low/high spin state copper ion, d
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bond giving dominant π overlap with sulfur directly. Finally, the nature of the ground state wave function of the blue copper protein is rich in electron absorption spectrum.
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Członkowska, Anna; Litwin, Tomasz; Dusek, Petr; Ferenci, Peter; Lutsenko, Svetlana; Medici, Valentina; Rybakowski, Janusz K.; Weiss, Karl Heinz; Schilsky, Michael L. (2018).
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The Blue Copper Proteins, a class of Type 1 copper proteins, are small proteins containing a cupredoxin fold and a single Type I copper ion coordinated by two
409:, protein structures are still formed with elongated bonds by 0.1 Ă… or less. with the oxidized and reduced protein structures, they are superimposable. With 318:
to metal charge transfer an intense band at 600 nm that gives the characteristic of a deep blue colour present in the electron absorption spectrum.
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ion will form either a trigonal bipyramidal or tetrahedral coordination. The Type 1 copper proteins are identified as blue copper proteins due to the
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spectroscopy, T1Cu centres show small hyperfine splittings in the parallel region of the spectrum (compared to common copper coordination compounds).
228:). The two copper atoms are coordinated by two histidines, one methionine, a protein backbone carbonyl oxygen, and two bridging cysteine residues. 69:
used in defense against free radicals, peptidyl-α-monooxygenase for the production of hormones, and tyrosinase, which affects skin pigmentation.
1018: 787: 641:, Metal Ions in Life Sciences (Series editors Astrid Sigel, Eva Freisinger and Roland K.O. Sigel), vol. 20, Berlin/Boston: de Gruyter, 333:, is built from polypeptide folds that are commonly found in blue copper proteins β sandwich structure. The structure is very similar to 533: 257:
is found in nitrous-oxide reductase. The four copper atoms are coordinated by seven histidine residues and bridged by a sulfur atom.
187: 57:). Some organisms even use copper proteins to carry oxygen instead of iron proteins. A prominent copper protein in humans is in 460: 371: 389:
bonds because CT intensity reflects overlap of the donor and acceptor orbitals in the CT process. This required that the 3d
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contain the third type of T1Cu centres: besides a methionine in one axial position, they contain a second axial ligand (a
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Klinman JP (November 1996). "Mechanisms Whereby Mononuclear Copper Proteins Functionalize Organic Substrates".
222: 45:. Copper proteins are found in all forms of air-breathing life. These proteins are usually associated with 218: 163: 145: 363: 601:, Kennepohl P, Solomon EI (November 1996). "Structural and Functional Aspects of Metal Sites in Biology". 62: 271: 239: 210: 66: 58: 413:, there is an exception due to the histidine being ligated and it is not bound to copper iodide. In 167: 481:
symmetric geometry energy level splitting diagram with an E ground state that is degenerate. The C
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Solomon EI, Sundaram UM, Machonkin TE (November 1996). "Multicopper Oxidases and Oxygenases".
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Solomon EI, Hadt RG (April 2011). "Recent advances in understanding blue copper proteins".
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The cysteine sulfur copper (II) ion bonds range from 2.6 to 3.2 Ă…. With the reduced form,
267: 183: 93: 834:"Blue copper proteins: a comparative analysis of their molecular interaction properties" 950: 925: 858: 833: 575: 550: 986: 1007: 426: 155: 941: 815: 433:
46 donates a hydrogen bond to the carbonyl backbone of Asparagine10. The Cysteine84
394: 246:. The copper atom is coordinated by three histidines in trigonal pyramidal geometry. 974: 505: 474: 438: 385: 334: 275: 109: 779: 141: 77:
The metal centers in the copper proteins can be classified into several types:
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Cu complexes often have relatively slow transfer rates. An example is the Cu
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orbital of the blue copper site be oriented such that its lobes bisect the
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The blue copper proteins owe their name to their intense blue coloration (
418: 303: 125: 89: 61:(cco). This enzyme cco mediates the controlled combustion that produces 34: 849: 225: 454: 450: 446: 346:
Electronic structure of the blue copper protein type I copper complexes
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Malmström BG (1994). "Rack-induced bonding in blue-copper proteins".
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Lewis EA, Tolman WB (2004). "Reactivity of Dioxygen-Copper Systems".
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38, and Histidine37 interacts strongly with the carbonyl backbone of
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of the cysteine sulfur. Most copper (II) complexes will exhibit the
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112 thiolate accepts the hydrogen bonds from the amide backbone of
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Proteins that contain one or more copper ions as prosthetic groups
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De Rienzo F, Gabdoulline RR, Menziani MC, Wade RC (August 2000).
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Warren JJ, Lancaster KM, Richards JH, Gray HB (October 2012).
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are characterized by a single copper atom coordinated by two
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Transition Metals and Sulfur: A Strong Relationship for Life
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The structure of active site of type 1- blue copper protein.
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Structure of the Blue Copper Proteins Type I Copper Centers
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complex geometry. With blue copper proteins, a distorted
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Biological inorganic chemistry: structure and reactivity
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The protein structure of a Type 1 blue copper protein,
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Ligand field splitting diagram for blue copper protein
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when the complex forms a tetragonal distortion of an
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and pseudoazurin) the axial ligand is the sulfur of
175:, where they assist in oxidations or oxygenations. 774:. Berlin Heidelberg: Springer. pp. 157–164. 449:33 and more weakly with the carbonyl backbone of 186:. These centres are present in some oxidases and 116:, whereas aminoacids other than methionine (e.g. 457:34, and the amide backbone of Phenylalanine35. 441:accepts a hydrogen bond from a amide backbone, 310:thioether S-donor. In the oxidized state, the 120:) give rise to class II T1Cu copper proteins. 975:"Coordination compounds in the entatic state" 8: 270:). The blue copper protein often called as “ 949: 857: 646: 574: 401:Inner and outer sphere metal coordination 459: 320: 516: 65:. Other copper proteins include some 919: 917: 915: 887: 885: 883: 881: 879: 877: 827: 825: 7: 801: 799: 765: 763: 469:Blue Copper Protein "Entatic State" 49:with or without the involvement of 526:Copper Proteins and Copper Enzymes 25: 930:Journal of Inorganic Biochemistry 379:Spectral changes with temperature 96:structure, and a variable axial 942:10.1016/j.jinorgbio.2012.05.002 979:Coordination Chemistry Reviews 894:Coordination Chemistry Reviews 555:Nature Reviews Disease Primers 179:Type III copper centres (T3Cu) 1: 987:10.1016/s0010-8545(00)00265-4 152:Type II copper centres (T2Cu) 1019:Peripheral membrane proteins 780:10.1007/978-3-642-79502-2_12 528:. Vol. III. CRC Press. 188:oxygen-transporting proteins 82:Type I copper centres (T1Cu) 1035: 282:, and nitrite reductase, 973:Comba, Peter (May 2000). 906:10.1016/j.ccr.2010.12.008 648:10.1515/9783110589757-003 567:10.1038/s41572-018-0018-3 162:. They exhibit an axial 158:coordination by N or N/O 37:that contain one or more 806:Bertini I (2007-07-01). 306:thiolate S-donor and a 219:nitrous-oxide reductase 524:Lontie R, ed. (2018). 465: 326: 463: 324: 166:spectrum with copper 102:class I T1Cu proteins 67:superoxide dismutases 981:. 200–202: 217–245. 272:moonlighting protein 262:Blue copper proteins 232:Copper B centres (Cu 203:Copper A centres (Cu 59:cytochrome c oxidase 850:10.1110/ps.9.8.1439 372:tetrahedral complex 251:Copper Z centre (Cu 168:hyperfine splitting 466: 364:Jahn-Teller effect 327: 789:978-3-540-58830-6 746:10.1021/cr950046o 711:10.1021/cr020633r 675:10.1021/cr950047g 615:10.1021/cr9500390 47:electron-transfer 43:prosthetic groups 16:(Redirected from 1026: 999: 998: 970: 964: 963: 953: 921: 910: 909: 900:(7–8): 774–789. 889: 872: 871: 861: 829: 820: 819: 803: 794: 793: 772:EJB Reviews 1994 767: 758: 757: 740:(7): 2563–2606. 734:Chemical Reviews 729: 723: 722: 705:(2): 1047–1076. 699:Chemical Reviews 694: 688: 686: 669:(7): 2541–2562. 663:Chemical Reviews 658: 652: 651: 650: 633: 627: 626: 609:(7): 2239–2314. 603:Chemical Reviews 595: 589: 588: 578: 551:"Wilson disease" 546: 540: 539: 521: 501:Copper in health 358:orbital and the 21: 1034: 1033: 1029: 1028: 1027: 1025: 1024: 1023: 1014:Copper proteins 1004: 1003: 1002: 972: 971: 967: 923: 922: 913: 891: 890: 875: 838:Protein Science 831: 830: 823: 805: 804: 797: 790: 769: 768: 761: 731: 730: 726: 696: 695: 691: 660: 659: 655: 635: 634: 630: 597: 596: 592: 548: 547: 543: 536: 523: 522: 518: 514: 497: 489: 484: 480: 471: 403: 392: 381: 357: 353: 348: 296: 264: 254: 249:A tetranuclear 235: 206: 184:bridging ligand 142:charge transfer 94:trigonal planar 88:residues and a 75: 56: 31:Copper proteins 28: 23: 22: 18:Copper proteins 15: 12: 11: 5: 1032: 1030: 1022: 1021: 1016: 1006: 1005: 1001: 1000: 965: 911: 873: 844:(8): 1439–54. 821: 795: 788: 759: 724: 689: 653: 628: 590: 541: 534: 515: 513: 510: 509: 508: 503: 496: 493: 487: 482: 478: 470: 467: 402: 399: 390: 380: 377: 355: 351: 347: 344: 295: 292: 263: 260: 259: 258: 252: 247: 233: 229: 204: 199: 176: 149: 126:carbonyl group 74: 71: 54: 26: 24: 14: 13: 10: 9: 6: 4: 3: 2: 1031: 1020: 1017: 1015: 1012: 1011: 1009: 996: 992: 988: 984: 980: 976: 969: 966: 961: 957: 952: 947: 943: 939: 935: 931: 927: 920: 918: 916: 912: 907: 903: 899: 895: 888: 886: 884: 882: 880: 878: 874: 869: 865: 860: 855: 851: 847: 843: 839: 835: 828: 826: 822: 817: 813: 809: 802: 800: 796: 791: 785: 781: 777: 773: 766: 764: 760: 755: 751: 747: 743: 739: 735: 728: 725: 720: 716: 712: 708: 704: 700: 693: 690: 684: 680: 676: 672: 668: 664: 657: 654: 649: 644: 640: 632: 629: 624: 620: 616: 612: 608: 604: 600: 594: 591: 586: 582: 577: 572: 568: 564: 560: 556: 552: 545: 542: 537: 535:9781315891798 531: 527: 520: 517: 511: 507: 504: 502: 499: 498: 494: 492: 476: 468: 462: 458: 456: 452: 448: 444: 440: 436: 432: 428: 427:Phenylalanine 424: 420: 416: 412: 408: 400: 398: 396: 387: 378: 376: 373: 369: 365: 361: 345: 343: 340: 336: 332: 323: 319: 317: 313: 309: 305: 301: 293: 291: 289: 285: 281: 277: 276:plastocyanine 273: 269: 261: 256: 248: 245: 243: 238:are found in 237: 230: 227: 224: 220: 216: 214: 209:are found in 208: 200: 197: 193: 189: 185: 180: 177: 174: 169: 165: 161: 157: 156:square planar 153: 150: 147: 143: 140: 136: 131: 127: 123: 119: 115: 111: 107: 103: 99: 95: 92:residue in a 91: 87: 83: 80: 79: 78: 72: 70: 68: 64: 60: 52: 48: 44: 40: 36: 32: 19: 978: 968: 933: 929: 897: 893: 841: 837: 807: 771: 737: 733: 727: 702: 698: 692: 666: 662: 656: 638: 631: 606: 602: 593: 558: 554: 544: 525: 519: 506:Stellacyanin 475:aquo complex 472: 439:plastocyanin 404: 386:plastocyanin 382: 349: 335:plastocyanin 328: 302:N-donors, a 297: 265: 250: 241: 231: 212: 202: 178: 151: 110:plastocyanin 81: 76: 30: 29: 284:haemocyanin 240:cytochrome 211:cytochrome 1008:Categories 936:: 119–26. 512:References 443:Asparagine 423:Asparagine 368:octahedral 308:methionine 288:tyrosinase 201:Binuclear 196:tyrosinase 192:hemocyanin 154:exhibit a 114:methionine 995:0010-8545 561:(1): 21. 431:Histidine 429:114, and 411:amicyanin 395:Cu-S(Cys) 360:p-orbital 331:amicyanin 300:histidine 118:glutamine 106:amicyanin 86:histidine 960:22658756 868:10975566 816:93183803 754:11848837 719:14871149 683:11848836 623:11848828 585:30190489 495:See also 435:thiolate 425:47, and 419:Cysteine 375:planar. 304:cysteine 226:1.7.99.6 90:cysteine 41:ions as 35:proteins 951:3434318 859:2144732 599:Holm RH 576:6416051 455:Glycine 451:Leucine 447:Alanine 244:oxidase 215:oxidase 173:enzymes 160:ligands 130:glycine 122:Azurins 73:Classes 993:  958:  948:  866:  856:  814:  786:  752:  717:  681:  621:  583:  573:  532:  417:, the 415:azurin 391:(x-y ) 339:azurin 316:ligand 280:azurin 268:Cu(II) 190:(e.g. 104:(e.g. 98:ligand 51:oxygen 39:copper 812:S2CID 128:of a 100:. In 991:ISSN 956:PMID 864:PMID 784:ISBN 750:PMID 715:PMID 679:PMID 619:PMID 581:PMID 530:ISBN 337:and 286:and 217:and 194:and 33:are 983:doi 946:PMC 938:doi 934:115 902:doi 898:255 854:PMC 846:doi 776:doi 742:doi 707:doi 703:104 671:doi 643:doi 611:doi 571:PMC 563:doi 453:5, 437:of 407:CuI 164:EPR 146:EPR 63:ATP 1010:: 989:. 977:. 954:. 944:. 932:. 928:. 914:^ 896:. 876:^ 862:. 852:. 840:. 836:. 824:^ 810:. 798:^ 782:. 762:^ 748:. 738:96 736:. 713:. 701:. 677:. 667:96 665:. 617:. 607:96 605:. 579:. 569:. 557:. 553:. 483:3v 479:3v 354:-d 312:Cu 290:. 278:, 223:EC 198:). 139:Cu 108:, 53:(O 997:. 985:: 962:. 940:: 908:. 904:: 870:. 848:: 842:9 818:. 792:. 778:: 756:. 744:: 721:. 709:: 687:. 685:. 673:: 645:: 625:. 613:: 587:. 565:: 559:4 538:. 488:s 486:C 356:y 352:x 255:) 253:Z 242:c 236:) 234:B 221:( 213:c 207:) 205:A 137:→ 135:S 55:2 20:)

Index

Copper proteins
proteins
copper
prosthetic groups
electron-transfer
oxygen
cytochrome c oxidase
ATP
superoxide dismutases
histidine
cysteine
trigonal planar
ligand
class I T1Cu proteins
amicyanin
plastocyanin
methionine
glutamine
Azurins
carbonyl group
glycine
S
Cu
charge transfer
EPR
square planar
ligands
EPR
hyperfine splitting
enzymes

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