Knowledge

Uptake signal sequence

Source 📝

409: 115:(as well as in restriction-modification and replication) than in other annotated gene groups. These authors proposed that the over-representation of DUS in DNA repair and recombination genes may reflect the benefit of maintaining the integrity of the DNA repair and recombination machinery by preferentially taking up genome maintenance genes that could replace their damaged counterparts in the recipient cell's genome. Uptake of such genes could provide a mechanism for facilitating recovery from DNA damage after 425: 305: 99:, DNA transformation requires the presence of short DUS (10-12 mers residing in coding and intergenic regions) of the donor DNA. Specific recognition of DUSs is mediated by a type IV 466: 89:
is the process by which a recipient bacterial cell takes up naked DNA from its environment and integrates this DNA into the recipient's genome by
187:
Cehovin A, Simpson PJ, McDowell MA, Brown DR, Noschese R, Pallett M, Brady J, Baldwin GS, Lea SM, Matthews SJ, Pelicic V (2013).
459: 86: 490: 408: 452: 95: 66: 52: 112: 90: 72: 369: 314: 200: 356:"Genome Dynamics of Short Oligonucleotides: The Example of Bacterial DNA Uptake Enhancing Sequences" 397: 342: 277: 228: 169: 387: 377: 332: 322: 267: 259: 218: 208: 159: 149: 43: 17: 373: 318: 204: 436: 392: 355: 223: 188: 164: 137: 337: 300: 272: 247: 479: 61: 485: 382: 154: 301:"Evolutionary stability of DNA uptake signal sequences in the Pasteurellaceae" 248:"Biased distribution of DNA uptake sequences towards genome maintenance genes" 108: 424: 327: 213: 116: 401: 346: 281: 232: 173: 432: 360: 263: 246:
Davidsen T, Rødland EA, Lagesen K, Seeberg E, Rognes T, Tønjum T (2004).
39: 107:
DUSs occur at a significantly higher density in genes involved in
100: 299:
Bakkali, M.; Chen, T.-Y.; Lee, H. C.; Redfield, R. J. (2004).
35: 440: 189:"Specific DNA recognition mediated by a type IV pilin" 138:"Dialects of the DNA uptake sequence in Neisseriaceae" 354:Bakkali, Mohammed (2007). Fairhead, Cecile (ed.). 306:Proceedings of the National Academy of Sciences 38:sequences preferentially taken up by competent 136:Frye SA, Nilsen M, Tønjum T, Ambur OH (2013). 460: 8: 467: 453: 60:(DUS), are found in species of the family 391: 381: 336: 326: 271: 222: 212: 163: 153: 128: 7: 421: 419: 103:. Davidsen et al. reported that in 25: 423: 407: 1: 56:). Similar sequences, called 439:. You can help Knowledge by 383:10.1371/journal.pone.0000741 193:Proc. Natl. Acad. Sci. U.S.A 155:10.1371/journal.pgen.1003458 507: 418: 18:DNA uptake signal sequence 328:10.1073/pnas.0306366101 214:10.1073/pnas.1218832110 28:Uptake signal sequences 87:Genetic transformation 81:Neisseria meningitidis 67:Neisseria meningitidis 53:Haemophilus influenzae 73:Neisseria gonorrhoeae 58:DNA uptake sequences 374:2007PLoSO...2..741B 319:2004PNAS..101.4513B 205:2013PNAS..110.3065C 264:10.1093/nar/gkh255 448: 447: 313:(13): 4513–4518. 252:Nucleic Acids Res 16:(Redirected from 498: 469: 462: 455: 427: 420: 412: 411: 405: 395: 385: 350: 340: 330: 286: 285: 275: 243: 237: 236: 226: 216: 184: 178: 177: 167: 157: 133: 21: 506: 505: 501: 500: 499: 497: 496: 495: 476: 475: 474: 473: 416: 406: 353: 298: 295: 290: 289: 245: 244: 240: 186: 185: 181: 135: 134: 130: 125: 105:N. meningitidis 96:N. meningitidis 84: 44:Pasteurellaceae 23: 22: 15: 12: 11: 5: 504: 502: 494: 493: 491:Genetics stubs 488: 478: 477: 472: 471: 464: 457: 449: 446: 445: 428: 414: 413: 351: 294: 293:External links 291: 288: 287: 238: 199:(8): 3065–70. 179: 148:(4): 3065–70. 127: 126: 124: 121: 83: 78: 42:of the family 24: 14: 13: 10: 9: 6: 4: 3: 2: 503: 492: 489: 487: 484: 483: 481: 470: 465: 463: 458: 456: 451: 450: 444: 442: 438: 435:article is a 434: 429: 426: 422: 417: 410: 403: 399: 394: 389: 384: 379: 375: 371: 367: 363: 362: 357: 352: 348: 344: 339: 334: 329: 324: 320: 316: 312: 308: 307: 302: 297: 296: 292: 283: 279: 274: 269: 265: 261: 258:(3): 1050–8. 257: 253: 249: 242: 239: 234: 230: 225: 220: 215: 210: 206: 202: 198: 194: 190: 183: 180: 175: 171: 166: 161: 156: 151: 147: 143: 139: 132: 129: 122: 120: 118: 114: 113:recombination 110: 106: 102: 98: 97: 92: 91:recombination 88: 82: 79: 77: 75: 74: 69: 68: 63: 62:Neisseriaceae 59: 55: 54: 49: 45: 41: 37: 33: 29: 19: 441:expanding it 430: 415: 365: 359: 310: 304: 255: 251: 241: 196: 192: 182: 145: 141: 131: 104: 94: 85: 80: 71: 65: 57: 51: 47: 34:) are short 31: 27: 26: 368:(8): e741. 64:(including 480:Categories 142:PLOS Genet 123:References 109:DNA repair 117:genotoxic 433:genetics 402:17710141 361:PLoS ONE 347:15070749 282:14960717 233:23386723 174:23637627 119:stress. 40:bacteria 393:1939737 370:Bibcode 315:Bibcode 224:3581936 201:Bibcode 165:3630211 400:  390:  345:  338:384778 335:  280:  273:373393 270:  231:  221:  172:  162:  93:. In 431:This 101:pilin 437:stub 398:PMID 343:PMID 278:PMID 229:PMID 170:PMID 111:and 70:and 48:e.g. 486:DNA 388:PMC 378:doi 333:PMC 323:doi 311:101 268:PMC 260:doi 219:PMC 209:doi 197:110 160:PMC 150:doi 76:). 36:DNA 32:USS 482:: 396:. 386:. 376:. 364:. 358:. 341:. 331:. 321:. 309:. 303:. 276:. 266:. 256:32 254:. 250:. 227:. 217:. 207:. 195:. 191:. 168:. 158:. 144:. 140:. 50:, 468:e 461:t 454:v 443:. 404:. 380:: 372:: 366:2 349:. 325:: 317:: 284:. 262:: 235:. 211:: 203:: 176:. 152:: 146:9 46:( 30:( 20:)

Index

DNA uptake signal sequence
DNA
bacteria
Pasteurellaceae
Haemophilus influenzae
Neisseriaceae
Neisseria meningitidis
Neisseria gonorrhoeae
Genetic transformation
recombination
N. meningitidis
pilin
DNA repair
recombination
genotoxic
"Dialects of the DNA uptake sequence in Neisseriaceae"
doi
10.1371/journal.pgen.1003458
PMC
3630211
PMID
23637627
"Specific DNA recognition mediated by a type IV pilin"
Bibcode
2013PNAS..110.3065C
doi
10.1073/pnas.1218832110
PMC
3581936
PMID

Text is available under the Creative Commons Attribution-ShareAlike License. Additional terms may apply.