Knowledge (XXG)

Enterotype

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Our knowledge of species and functional composition of the human gut microbiome is rapidly increasing, but it is still based on very few cohorts and little is known about variation across the world. By combining 22 newly sequenced faecal metagenomes of individuals from four countries with previously
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and his associates. They found that enterotypes are not dictated by age, gender, body weight, or national divisions. There are indications that long-term diet influences enterotype. Type 1 is characterized by high levels of
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Wu GD, Chen J, Hoffmann C, Bittinger K, Chen YY, Keilbaugh SA, Bewtra M, Knights D, Walters WA, Knight R, Sinha R, Gilroy E, Gupta K, Baldassano R, Nessel L, Li H, Bushman FD, Lewis JD (October 7, 2011).
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have enterotypes that are compositionally analogous to those found in humans. Using longitudinal samples, researchers found that the enterotype of individual chimpanzees varied over time.
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published data sets, here we identify three robust clusters (referred to as enterotypes hereafter) that are not nation or continent specific.
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De Filippo, C.; Cavalieri, D.; Di Paola, M.; Ramazzotti, M.; Poullet, J. B.; Massart, S.; Collini, S.; Pieraccini, G.; Lionetti, P. (2010).
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Knights, Dan; Ward, Tonya; McKinlay, Christopher; Miller, Hannah; Gonzalez, Antonio; McDonald, Daniel; Knight, Rob (8 October 2014).
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Andrew H. Moeller; Patrick H. Degnan; Anne E. Pusey; Michael L. Wilson; Beatrice H. Hahn; Howard Ochman (November 13, 2012).
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a group of scientists now report just three distinct ecosystems in the guts of people they have studied.
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composition—those who eat plenty of protein and animal fats typical of Western diet have predominantly
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is a classification of living organisms based on the bacteriological composition of their
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made up 53% of the gut bacteria, but were absent in age-matched European children.
27:. The discovery of three human enterotypes was announced in the April 2011 issue of 599: 67: 56: 85:
bacteria, while for those who consume more carbohydrates, especially fibre, the
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Gorvitovskaia, Anastassia; Holmes, Susan P.; Huse, Susan M. (12 April 2016).
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Studies also indicate that long-term diet is strongly associated with the
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Wu GD, Chen J, Hoffmann C, Bittinger K, Chen YY, et al. (2011).
475:"Linking long-term dietary patterns with gut microbial enterotypes" 206:"Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes" 16:
Classification of living organisms based on its gut microbiome
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The value of classifying by enterotype has been challenged.
607: 116:"Bacteria Divide People Into 3 Types, Scientists Say" 263:"Gut-Bacteria Mapping Finds Three Global Varieties" 289:"Each human has one of only three gut ecosystems" 419:Proceedings of the National Academy of Sciences 143:Arumugam M, Raes J, et al. (April 2011). 627: 8: 634: 620: 66:In a study of gut bacteria of children in 54:are common, and type 3 has high levels of 563: 506: 448: 438: 389: 379: 338: 237: 176: 145:"Enterotypes of the human gut microbiome" 103: 109: 107: 7: 588: 586: 606:. You can help Knowledge (XXG) by 14: 590: 287:Coghlan, Andy (20 April 2011). 261:Keim, Brandon (20 April 2011). 114:Zimmer, Carl (20 April 2011). 1: 679: 585: 331:10.1016/j.chom.2014.09.013 315:"Rethinking "Enterotypes"" 381:10.1186/s40168-016-0160-7 499:10.1126/science.1208344 440:10.1073/pnas.1005963107 319:Cell Host & Microbe 230:10.1126/science.1208344 602:-related article is a 536:Nature Communications 548:2012NatCo...3.1179M 491:2011Sci...334..105W 431:2010PNAS..10714691D 222:2011Sci...334..105W 169:10.1038/nature09944 161:2011Natur.473..174. 663:Microbiology stubs 556:10.1038/ncomms2159 120:The New York Times 89:species dominate. 615: 614: 216:(6052): 105–108. 44:, type 2 has few 670: 636: 629: 622: 594: 587: 578: 577: 567: 527: 521: 520: 510: 469: 463: 462: 452: 442: 410: 404: 403: 393: 383: 359: 353: 352: 342: 310: 304: 303: 301: 299: 284: 278: 277: 275: 273: 258: 252: 251: 241: 201: 195: 194: 180: 155:(7346): 174–80. 140: 134: 133: 128: 126: 111: 678: 677: 673: 672: 671: 669: 668: 667: 643: 642: 641: 640: 583: 581: 529: 528: 524: 485:(6052): 105–8. 471: 470: 466: 425:(33): 14691–6. 412: 411: 407: 361: 360: 356: 312: 311: 307: 297: 295: 286: 285: 281: 271: 269: 260: 259: 255: 203: 202: 198: 142: 141: 137: 124: 122: 113: 112: 105: 101: 17: 12: 11: 5: 676: 674: 666: 665: 660: 655: 645: 644: 639: 638: 631: 624: 616: 613: 612: 595: 580: 579: 542:(1179): 1179. 522: 464: 405: 354: 325:(4): 433–437. 305: 279: 267:Wired Magazine 253: 196: 135: 102: 100: 97: 79:gut microbiome 25:gut microbiota 15: 13: 10: 9: 6: 4: 3: 2: 675: 664: 661: 659: 656: 654: 651: 650: 648: 637: 632: 630: 625: 623: 618: 617: 611: 609: 605: 601: 596: 593: 589: 584: 575: 571: 566: 561: 557: 553: 549: 545: 541: 537: 533: 526: 523: 518: 514: 509: 504: 500: 496: 492: 488: 484: 480: 476: 468: 465: 460: 456: 451: 446: 441: 436: 432: 428: 424: 420: 416: 409: 406: 401: 397: 392: 387: 382: 377: 373: 369: 365: 358: 355: 350: 346: 341: 336: 332: 328: 324: 320: 316: 309: 306: 294: 293:New Scientist 290: 283: 280: 268: 264: 257: 254: 249: 245: 240: 235: 231: 227: 223: 219: 215: 211: 207: 200: 197: 193: 188: 184: 179: 174: 170: 166: 162: 158: 154: 150: 146: 139: 136: 132: 121: 117: 110: 108: 104: 98: 96: 94: 90: 88: 84: 80: 75: 73: 70:(in Africa), 69: 64: 61: 59: 58: 53: 52: 47: 43: 42: 36: 32: 31: 26: 22: 653:Bacteriology 608:expanding it 600:microbiology 597: 582: 539: 535: 525: 482: 478: 467: 422: 418: 408: 371: 367: 357: 322: 318: 308: 296:. Retrieved 292: 282: 270:. Retrieved 266: 256: 213: 209: 199: 190: 152: 148: 138: 130: 123:. Retrieved 119: 91: 86: 82: 76: 71: 68:Burkina Faso 65: 62: 57:Ruminococcus 55: 49: 45: 39: 28: 20: 18: 93:Chimpanzees 83:Bacteroides 46:Bacteroides 41:Bacteroides 647:Categories 368:Microbiome 99:References 87:Prevotella 72:Prevotella 51:Prevotella 21:enterotype 658:Gut flora 374:(4): 15. 35:Peer Bork 574:23149725 517:21885731 459:20679230 400:27068581 349:25299329 298:21 April 272:21 April 248:21885731 187:21508958 125:21 April 565:3520023 544:Bibcode 508:3368382 487:Bibcode 479:Science 450:2930426 427:Bibcode 391:4828855 340:5558460 239:3368382 218:Bibcode 210:Science 178:3728647 157:Bibcode 572:  562:  515:  505:  457:  447:  398:  388:  347:  337:  246:  236:  185:  175:  149:Nature 30:Nature 598:This 604:stub 570:PMID 513:PMID 455:PMID 396:PMID 345:PMID 300:2011 274:2011 244:PMID 183:PMID 127:2011 48:but 560:PMC 552:doi 503:PMC 495:doi 483:334 445:PMC 435:doi 423:107 386:PMC 376:doi 335:PMC 327:doi 234:PMC 226:doi 214:334 173:PMC 165:doi 153:473 33:by 19:An 649:: 568:. 558:. 550:. 538:. 534:. 511:. 501:. 493:. 481:. 477:. 453:. 443:. 433:. 421:. 417:. 394:. 384:. 372:15 370:. 366:. 343:. 333:. 323:16 321:. 317:. 291:. 265:. 242:. 232:. 224:. 212:. 208:. 189:. 181:. 171:. 163:. 151:. 147:. 129:. 118:. 106:^ 60:. 635:e 628:t 621:v 610:. 576:. 554:: 546:: 540:3 519:. 497:: 489:: 461:. 437:: 429:: 402:. 378:: 351:. 329:: 302:. 276:. 250:. 228:: 220:: 167:: 159::

Index

gut microbiota
Nature
Peer Bork
Bacteroides
Prevotella
Ruminococcus
Burkina Faso
gut microbiome
Chimpanzees


"Bacteria Divide People Into 3 Types, Scientists Say"
"Enterotypes of the human gut microbiome"
Bibcode
2011Natur.473..174.
doi
10.1038/nature09944
PMC
3728647
PMID
21508958
"Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes"
Bibcode
2011Sci...334..105W
doi
10.1126/science.1208344
PMC
3368382
PMID
21885731

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