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Kozak consensus sequence

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both match the consensus. An 'adequate' consensus has only 1 of these sites, while a 'weak' consensus has neither. The cc at −1 and −2 are not as conserved, but contribute to the overall strength. There is also evidence that a G in the -6 position is important in the initiation of translation. While the +4 and the −3 positions in the Kozak sequence have the greatest relative importance in the establishing a favorable initiation context a CC or AA motif at −2 and −1 were found to be important in the initiation of translation in tobacco and maize plants. Protein synthesis in yeast was found to be highly affected by composition of the Kozak sequence in yeast, with adenine enrichment resulting in higher levels of gene expression. A suboptimal Kozak sequence can allow for PIC to scan past the first AUG site and start initiation at a downstream AUG codon.
53:, the sequence is an integral aspect of protein regulation and overall cellular health as well as having implications in human disease. It ensures that a protein is correctly translated from the genetic message, mediating ribosome assembly and translation initiation. A wrong start site can result in non-functional proteins. As it has become more studied, expansions of the nucleotide sequence, bases of importance, and notable exceptions have arisen. The sequence was named after the scientist who discovered it, 252: 366: 248:(m7G) nucleotide which can help recruit the PIC to the mRNA and initiate scanning. This recruitment to the m7G 5′ cap is supported by the inability of eukaryotic ribosomes to translate circular mRNA, which has no 5′ end. Once the PIC binds to the mRNA it scans until it reaches the first AUG codon in a Kozak sequence. This scanning is referred to as the scanning mechanism of initiation. 422:. The correct initiation codon was located in a region that did not match the Kozak consensus sequence as closely as the surrounding sequence of the new, upstream initiation site did, which resulted in reduced translation efficiency of functional SOX9 protein. The patient in whom this mutation was detected had developed acampomelic 2467:
Mohan, Rajiv A.; Engelen, Klaartje van; Stefanovic, Sonia; Barnett, Phil; Ilgun, Aho; Baars, Marieke J. H.; Bouma, Berto J.; Mulder, Barbara J. M.; Christoffels, Vincent M.; Postma, Alex V. (2014). "A mutation in the Kozak sequence of GATA4 hampers translation in a family with atrial septal defects".
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Research has shown that a mutation of G—>C in the −6 position of the β-globin gene (β+45; human) disrupted the haematological and biosynthetic phenotype function. This was the first mutation found in the Kozak sequence and showed a 30% decrease in translational efficiency. It was found in a family
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is an example of a gene with a weak Kozak consensus sequence. For initiation of translation from such a site, other features are required in the mRNA sequence in order for the ribosome to recognize the initiation codon. Exceptions to the first AUG rule may occur if it is not contained in a Kozak-like
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which could hinder scanning. The scanning of an mRNA continues until the first AUG codon on the mRNA is reached, this is known as the "First AUG Rule". While exceptions to the "First AUG Rule" exist, most exceptions take place at a second AUG codon that is located 3 to 5 nucleotides downstream from
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is used as an initiation codon, but methionine is still the first amino acid as it is the met-tRNA in the initiation complex that binds to the mRNA). Variation within the Kozak sequence alters the "strength" thereof. Kozak sequence strength refers to the favorability of initiation, affecting how much
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nucleotide of the "AUG" is delineated as +1 in mRNA sequences with the preceding base being labeled as −1, i.e. there is no 0 position. For a 'strong' consensus, the nucleotides at positions +4 (i.e. G in the consensus) and −3 (i.e. either A or G in the consensus) relative to the +1 nucleotide must
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subunit of the small ribosome subunit to bind to the AUG (or alternative) start codon immediately. In contrast, scanning along the mRNA results in a more rigorous selection process for the AUG codon than in bacteria. An example of bacterial start codon promiscuity can be seen in the use of the
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Similar observations were made regarding mutations in the position −5 from the start codon, AUG. Cytosine in this position, as opposed to thymine, showed more efficient translation and increased expression of the platelet adhesion receptor, glycoprotein Ibα in humans.
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The ability of the Kozak sequence to optimize translation can result in novel initiation codons in the typically untranslated region of the 5′ (5′ UTR) end of the mRNA transcript. A G to A mutation was described by Bohlen et al. (2017) in a Kozak-like region in the
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Afshar-Kharghan, Vahid; Li, Chester Q.; Khoshnevis-Asl, Mohammad; LóPez, José A. (1999). "Kozak Sequence Polymorphism of the Glycoprotein (GP) Ib Gene is a Major Determinant of the Plasma Membrane Levels of the Platelet GP Ib-IX-V Complex".
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It is believed that the PIC is stalled at the Kozak sequence by interactions between eIF2 and the −3 and +4 nucleotides in the Kozak position. This stalling allows the start codon and the corresponding anticodon time to form the correct
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and could be a potential way to control translation through initiation. For initiation of translation from such a site, other features are required in the mRNA sequence in order for the ribosome to recognize the initiation codon.
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The scanning mechanism of initiation, which utilizes the Kozak sequence, is found only in eukaryotes and has significant differences from the way bacteria initiate translation. The biggest difference is the existence of the
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is mutated to a cytosine, a reduction in GATA4 protein levels results, which leads to a decrease in the expression of genes regulated by the GATA4 transcription factor and linked to the development of atrial septal defect.
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Marilyn Kozak demonstrated, through systematic study of point mutations, that any mutations of a strong consensus sequence in the −3 position or to the +4 position resulted in highly impaired translation initiation both
207:. Larger letters indicate a higher frequency of incorporation. Note the larger size of A and G at the 8 position (−3, Kozak position) and at the G at position 14 which corresponds to (+4) position in the Kozak sequence. 224:(AUG), located within the Kozak sequence. Prior to translation initiation, scanning is done by the pre-initiation complex (PIC). The PIC consists of the 40S (small ribosomal subunit) bound to the ternary complex, 2859:
Gallaher SD, Craig RJ, Ganesan I, Purvine SO, McCorkle SR, Grimwood J, Strenkert D, Davidi L, Roth MS, Jeffers TL, Lipton MS, Niyogi KK, Schmutz J, Theg SM, Blaby-Haas CE, Merchant SS (February 12, 2021).
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in mRNA for bacteria. The SD sequence is located near the start codon which is in contrast to the Kozak sequence which actually contains the start codon. The Shine Dalgarno sequence allows the
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Pestova, Tatyana V.; Lomakin, Ivan B.; Lee, Joon H.; Choi, Sang Ki; Dever, Thomas E.; Hellen, Christopher U. T. (January 2000). "The joining of ribosomal subunits in eukaryotes requires eIF5B".
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Lukaszewicz, Marcin; Feuermann, Marc; Jérouville, Bénédicte; Stas, Arnaud; Boutry, Marc (2000-05-15). "In vivo evaluation of the context sequence of the translation initiation codon in plants".
4006: 2412:"The cardiac tissue-restricted homeobox protein Csx/Nkx2.5 physically associates with the zinc finger protein GATA4 and cooperatively activates atrial natriuretic factor gene expression" 313:. The Kozak consensus sequence is so common that the similarity of the sequence around the AUG codon to the Kozak Sequence is used as a criterion for finding start codons in eukaryotes. 3657: 369:
Campomelic dysplasia, a disorder that results in skeletal, reproductive and/or airway issues. Campomelic dysplasia can be the result of a Kozak-related mutation in the
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Louis, B. G.; Ganoza, M. C. (1988). "Signals determining translational start-site recognition in eukaryotes and their role in prediction of genetic reading frames".
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gene is responsible for gene expression in a wide variety of tissues including the heart. When the guanosine at the -6 position in the Kozak sequence of
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65432-+234 (gcc)gccRccAUGG (Kozak 1987) AGNNAUGN ANNAUGG ACCAUGG (Spotts et al., 1997, mentioned in Kozak 2002) GACACCAUGG (
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Kozak, Marilyn (1986-01-31). "Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes".
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bound to the eIF2. This leads to the a structural rearrangement that commits the PIC to binding to the large ribosomal subunit (60S) and forming the
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Kozak, Marilyn (March 1984). "Point mutations close to the AUG initiator codon affect the efficiency of translation of rat preproinsulin in vivo".
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Dunston JA, Hamlington JD, Zaveri J, et al. (September 2004). "The human LMX1B gene: transcription unit, promoter, and pathogenic mutations".
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Bohlen, Anna E. von; Böhm, Johann; Pop, Ramona; Johnson, Diana S.; Tolmie, John; Stücker, Ralf; Morris‐Rosendahl, Deborah; Scherer, Gerd (2017).
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Cigan, A. M.; Feng, L.; Donahue, T. F. (1988-10-07). "tRNAi(met) functions in directing the scanning ribosome to the start site of translation".
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Chen, Wenchao; Yang, Guopeng; He, Yue; Zhang, Shaoming; Chen, Haiyan; Shen, Ping; Chen, Xiangdong; Huang, Yu-Ping (17 September 2015).
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Kozak M (1984). "Point mutations close to the AUG initiator codon affect the efficiency of translation of rat preproinsulin in vivo".
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The first start codon closest to the 5′ end of the strand is not always recognized if it is not contained in a Kozak-like sequence.
1793:"Pi Release from eIF2, Not GTP Hydrolysis, Is the Step Controlled by Start-Site Selection during Eukaryotic Translation Initiation" 1355:"AUG codons at the beginning of protein coding sequences are frequent in eukaryotic mRNAs with a suboptimal start codon context" 4026: 4021: 4016: 3131: 3126: 268: 2028:"GTP hydrolysis controls stringent selection of the AUG start codon during translation initiation in Saccharomyces cerevisiae" 3841: 237: 2128:"Nucleotides Flanking the Start Codon in hsp70 mRNAs with Very Short 5'-UTRs Greatly Affect Gene Expression in Haloarchaea" 4717: 4438: 4428: 4423: 4418: 4403: 4393: 4383: 4378: 4373: 4353: 4328: 4318: 4293: 4288: 4283: 4278: 4273: 4258: 3207: 3054: 73: 2521:"Gene functionality's influence on the second codon: A large-scale survey of second codon composition in three domains" 1206:"Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes" 724: 3174: 3118: 3046: 1875:
Alekhina, O. M.; Vassilenko, K. S. (2012). "Translation initiation in eukaryotes: Versatility of the scanning model".
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The scanning mechanism of Initiation starts when the PIC binds the 5′ end of the mRNA. Scanning is stimulated by
4672: 4219: 4214: 4209: 4199: 4194: 4189: 4184: 4179: 4174: 4169: 4164: 4159: 4154: 4149: 4139: 4134: 4129: 4124: 4119: 4114: 4069: 4011: 4001: 3996: 3986: 3976: 3966: 3961: 3956: 3951: 3946: 3941: 3936: 3926: 3921: 3916: 3906: 3901: 3896: 3891: 3881: 3876: 3871: 3866: 3856: 3851: 3846: 3831: 3816: 2611:"Compilation and comparison of the sequence context around the AUG startcodons in Saccharomyces cerevisiae mRNAs" 389:
Mutations to the Kozak sequence can also have drastic effects upon human health; in particular, certain forms of
85: 98:), subsequent studies confirmed its conservation in higher eukaryotes generally. The sequence was defined as 5'- 4109: 4104: 4099: 4089: 4064: 4059: 3826: 3821: 3811: 3806: 3801: 3796: 3791: 1461:
Schmitt, Emmanuelle; Coureux, Pierre-Damien; Monestier, Auriane; Dubiez, Etienne; Mechulam, Yves (2019-02-21).
390: 2327:"A mutation creating an upstream initiation codon in the SOX9 5′ UTR causes acampomelic campomelic dysplasia" 4692: 379: 323: 255:
An overview of eukaryotic initiation showing the formation of the PIC and the scanning method of initiation.
4238: 3093: 1296:"Nucleotides upstream of the Kozak sequence strongly influence gene expression in the yeast S. cerevisiae" 285: 272: 61: 3085: 3081: 734: 660: 164: 160: 39: 32: 2562:"Comparison of the consensus sequence flanking translational start sites in Drosophila and vertebrates" 587: 1032:"Compilation and analysis of sequences upstream from the translational start site in eukaryotic mRNAs" 4094: 4054: 3089: 3077: 2920: 2245: 2139: 1741: 1690: 1627: 1533: 1463:"Start Codon Recognition in Eukaryotic and Archaeal Translation Initiation: A Common Structural Core" 1411: 1162: 423: 178:
is the initiation codon encoding a methionine amino acid at the N-terminus of the protein. (Rarely,
2909:"Downstream secondary structure facilitates recognition of initiator codons by eukaryotic ribosomes" 2410:
Lee, Y.; Shioi, T.; Kasahara, H.; Jobe, S. M.; Wiese, R. J.; Markham, B. E.; Izumo, S. (June 1998).
1205: 426:, a developmental disorder that causes skeletal, reproductive and airway issues due to insufficient 3619: 276:
the first AUG, or within 10 nucleotides from the 5′ end of the mRNA. At the AUG codon a Methionine
228:-GTP-intiatorMet tRNA (TC) to form the 43S ribosome. Assisted by several other initiation factors ( 1354: 191: 2743: 2501: 2277: 2218: 2008: 1900: 1773: 1443: 1233: 1186: 963: 419: 292:(80S). Once the 80S ribosome complex is formed then the elongation phase of translation starts. 1520:
Grzegorski, Steven J.; Chiari, Estelle F.; Robbins, Amy; Kish, Phillip E.; Kahana, Alon (2014).
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initiation. Haloarchaea are known to have a variant of the Kozak consensus sequence in their
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Kozak, Marilyn (July 1979). "Inability of circular mRNA to attach to eukaryotic ribosomes".
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Gualerzi, C. O.; Pon, C. L. (1990-06-26). "Initiation of mRNA translation in prokaryotes".
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Hinnebusch, Alan G. (2014). "The Scanning Mechanism of Eukaryotic Translation Initiation".
934:"Beta+45 G → C: a novel silent beta-thalassaemia mutation, the first in the Kozak sequence" 296: 1592: 338: 715:, the nucleic acid messenger that serves as the middleman in the Central Dogma of Biology 2924: 2249: 2143: 1745: 1694: 1631: 1616:"Adherence to the first-AUG rule when a second AUG codon follows closely upon the first" 1537: 1415: 1166: 882:
Kozak, Marilyn (1999-07-08). "Initiation of translation in prokaryotes and eukaryotes".
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The Kozak sequence was determined by sequencing of 699 vertebrate mRNAs and verified by
3727: 3029: 3004: 2986: 2961: 2888: 2861: 2836: 2811: 2778: 2359: 2326: 2162: 2127: 1952: 1919: 1556: 1521: 1497: 1462: 1330: 1295: 859: 826: 799: 766: 301: 57:. Kozak discovered the sequence through a detailed analysis of DNA genomic sequences. 3020: 2787: 2762: 2691: 2666: 2635: 2610: 2586: 2561: 2444: 2411: 2060: 2027: 1522:"Natural Variability of Kozak Sequences Correlates with Function in a Zebrafish Model" 1264: 1118: 1093: 1064: 1031: 895: 842: 251: 4711: 4677: 2943: 2908: 2198: 2026:
Huang, Han-kuei; Yoon, Heejeong; Hannig, Ernest M.; Donahue, Thomas F. (1997-09-15).
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human, cow, cat, dog, chicken, guinea pig, hamster, mouse, pig, rabbit, sheep, and
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proteins. The Dhx29 and Ddx3/Ded1 are DEAD-box helicases that help to unwind any
4682: 2962:"An analysis of vertebrate mRNA sequences: intimations of translational control" 2537: 2520: 1853: 983:"Conservation and Variability of the AUG Initiation Codon Context in Eukaryotes" 685: 623: 597: 221: 119: 2913:
Proceedings of the National Academy of Sciences of the United States of America
999: 982: 244:) it is recruited to the 5′ end of the mRNA. Eukaryotic mRNA is capped with a 65: 4687: 2714:
Seeber, F. (1997). "Consensus sequence of translational initiation sites from
2296: 1888: 1312: 728: 644: 613: 571: 540: 524: 498: 469: 130: 123: 107: 43: 2682: 2489: 2435: 2350: 2265: 2206: 2104: 2051: 1996: 1943: 1818: 1761: 1710: 1649: 1488: 1431: 1380: 1321: 1272: 1109: 1055: 1008: 903: 850: 790: 3774: 3005:"Pushing the limits of the scanning mechanism for initiation of translation" 2933: 2878: 2761:
Lütcke HA, Chow KC, Mickel FS, Moss KA, Kern HF, Scheele GA (January 1987).
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Hernández, Greco; Osnaya, Vincent G.; Pérez-Martínez, Xochitl (2019-07-25).
827:"Pushing the limits of the scanning mechanism for initiation of translation" 550: 50: 49:
transcripts. Regarded as the optimum sequence for initiating translation in
3038: 2845: 2546: 2497: 2368: 2308: 2171: 2043: 1961: 1896: 1861: 1826: 1769: 1640: 1600: 1565: 1506: 1439: 1388: 1339: 1280: 1047: 1016: 959: 911: 868: 2995: 2977: 2952: 2827: 2796: 2739: 2731: 2700: 2644: 2595: 2453: 2427: 2273: 2214: 2112: 2069: 2004: 1935: 1718: 1667: 1229: 1182: 1127: 1094:"An analysis of 5'-noncoding sequences from 699 vertebrate messenger RNAs" 1073: 808: 782: 3689: 3684: 3679: 2816:
Genome: Functional Significance of Abundant Upstream Open Reading Frames"
2481: 1920:"Molecular Mechanism of Scanning and Start Codon Selection in Eukaryotes" 1479: 718: 289: 217: 2096: 1294:
Li, Jing; Liang, Qiang; Song, Wenjiang; Marchisio, Mario Andrea (2017).
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gene that created a new translation initiation codon in an out-of-frame
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Nomenclature for Incompletely Specified Bases in Nucleic Acid Sequences
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is recognized by mRNA codon. Upon base pairing to the start codon the
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Tang, Sen-Lin; Chang, Bill C.H.; Halgamuge, Saman K. (August 2010).
4514: 4504: 4499: 4494: 4479: 4224: 4031: 3753: 3748: 3706: 3696: 3652: 3604: 3599: 3542: 3530: 3503: 3498: 3476: 3459: 3437: 3415: 3405: 3400: 3395: 3390: 3385: 3380: 3370: 3365: 3360: 3355: 3301: 3296: 3233: 3159: 2763:"Selection of AUG initiation codons differs in plants and animals" 395: 364: 342: 264: 260: 250: 190: 2667:"The sequence flanking translational initiation site in protozoa" 3738: 3713: 3634: 3629: 3624: 3614: 3609: 3564: 3554: 3525: 3515: 3427: 3345: 3333: 3264: 3238: 3228: 3218: 414: 281: 233: 229: 225: 204: 3050: 170:
the sequence in parentheses (gcc) is of uncertain significance.
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Algire, Mikkel A.; Maag, David; Lorsch, Jon R. (2005-10-28).
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Unger, Shelia; Scherer, Gerd; Superti-Furga, Andrea (1993).
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the 'AUGG' sequence is constant or rarely, if ever, changes.
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transcripts use a mix of SD sequence, Kozak sequence, and
2862:"Widespread polycistronic gene expression in green algae" 932:
De Angioletti M, Lacerra G, Sabato V, Carestia C (2004).
721:, the molecular machine responsible for protein synthesis 88:. While initially limited to a subset of vertebrates ( 438:
The Kozak consensus has been variously described as:
4665: 4467: 4246: 4237: 4045: 3782: 3773: 3764: 3726: 3643: 3590: 3581: 3551: 3512: 3424: 3342: 3261: 3215: 3206: 3173: 3145: 3117: 3108: 3101: 331:alternate start codons UUG and GUG for some genes. 2609:Hamilton R, Watanabe CK, de Boer HA (April 1987). 927: 925: 923: 921: 60:The Kozak sequence is not to be confused with the 2660: 2658: 2656: 2654: 378:from the Southeast Italy and they suffered from 2866:Proceedings of the National Academy of Sciences 1620:Proceedings of the National Academy of Sciences 767:"The scanning model for translation: an update" 393:are caused by Kozak sequence mutations in the 183:protein is synthesized from a given mRNA. The 3062: 1087: 1085: 1083: 129:upper-case letters indicate highly conserved 8: 820: 818: 199:showing the most conserved bases around the 159:a lower-case letter denotes the most common 152:) is always observed at this position (with 2470:American Journal of Medical Genetics Part A 1467:International Journal of Molecular Sciences 453:Kozak-like sequences in various eukaryotes 4243: 3779: 3770: 3587: 3212: 3114: 3105: 3069: 3055: 3047: 1924:Microbiology and Molecular Biology Reviews 3028: 2985: 2942: 2932: 2887: 2877: 2835: 2786: 2690: 2634: 2585: 2536: 2443: 2358: 2331:Molecular Genetics & Genomic Medicine 2320: 2318: 2161: 2151: 2059: 1951: 1808: 1657: 1639: 1555: 1545: 1496: 1478: 1370: 1329: 1311: 1117: 1063: 998: 949: 858: 798: 451: 746: 156:being more frequent according to Kozak) 16:Nucleic acid motif in molecular biology 2397:10.1182/blood.v94.1.186.413k19_186_191 1918:Hinnebusch, Alan G. (September 2011). 2303:. Seattle: University of Washington. 1593:10.1146/annurev-biochem-060713-035802 760: 758: 756: 754: 752: 750: 317:Differences from bacterial initiation 118:nucleotides indicate the translation 7: 434:Variations in the consensus sequence 399:gene's 5' untranslated region. The 2779:10.1002/j.1460-2075.1987.tb04716.x 737:, the process of peptide synthesis 14: 1300:Journal of Biological Engineering 110:notation summarized here) where: 1353:Kochetov, Alex V. (2005-04-01). 951:10.1046/j.1365-2141.2003.04754.x 727:, the ribosomal binding site of 284:in the PIC helps to hydrolyze a 2812:"Tying Down Loose Ends in the 2416:Molecular and Cellular Biology 987:Trends in Biochemical Sciences 1: 3021:10.1016/S0378-1119(02)01056-9 1581:Annual Review of Biochemistry 1372:10.1093/bioinformatics/bti136 1265:10.1016/S0168-9452(00)00195-3 896:10.1016/S0378-1119(99)00210-3 843:10.1016/S0378-1119(02)01056-9 825:Kozak, Marilyn (2002-10-16). 64:(RBS), that being either the 2810:Cross F (February 6, 2016). 2560:Cavener DR (February 1987). 2199:10.1016/0092-8674(86)90762-2 2153:10.1371/journal.pone.0138473 1810:10.1016/j.molcel.2005.09.008 1547:10.1371/journal.pone.0108475 1222:10.1016/0092-8674(86)90762-2 324:Shine-Dalgarno (SD) sequence 286:guanosine triphosphate (GTP) 74:internal ribosome entry site 2966:The Journal of Cell Biology 2538:10.1016/j.ygeno.2010.04.001 1854:10.1016/j.ygeno.2004.06.002 771:The Journal of Cell Biology 765:Kozak, M. (February 1989). 4734: 1000:10.1016/j.tibs.2019.07.001 680:(Chlamydomonas reinhardtii 4673:Aminoacyl tRNA synthetase 2960:Kozak M (November 1991). 2907:Kozak M (November 1990). 1977:Molecular Biology Reports 1889:10.1134/s0006297912130056 1313:10.1186/s13036-017-0068-1 300:sequence. This is called 86:site-directed mutagenesis 4697:Kozak consensus sequence 3003:Kozak M (October 2002). 1614:Kozak, M. (1995-03-28). 1092:Kozak M (October 1987). 545:Dictyostelium discoideum 519:Saccharomyces cerevisiae 391:congenital heart disease 273:secondary mRNA structure 163:at a position where the 42:initiation site in most 21:Kozak consensus sequence 4693:Shine-Dalgarno sequence 2934:10.1073/pnas.87.21.8301 2879:10.1073/pnas.2017714118 2665:Yamauchi K (May 1991). 2032:Genes & Development 1703:10.1126/science.3051379 1030:Kozak, M (1984-01-25). 725:Shine–Dalgarno sequence 380:thalassaemia intermedia 203:from over 10 000 human 2683:10.1093/nar/19.10.2715 2297:"Campomelic Dysplasia" 2044:10.1101/gad.11.18.2396 1641:10.1073/pnas.92.7.2662 1110:10.1093/nar/15.20.8125 1036:Nucleic Acids Research 374: 256: 208: 140:'R' indicates that a 62:ribosomal binding site 35:that functions as the 2978:10.1083/jcb.115.4.887 2828:10.1534/g3.115.023119 2732:10.1007/s004360050254 2720:Parasitology Research 2627:10.1093/nar/15.8.3581 2578:10.1093/nar/15.4.1353 2428:10.1128/mcb.18.6.3120 1936:10.1128/MMBR.00008-11 1877:Biochemistry (Moscow) 783:10.1083/jcb.108.2.229 368: 349:Mutations and disease 254: 242:polyA binding protein 194: 167:can nevertheless vary 4718:Protein biosynthesis 3593:​Mitochondrial 3078:Protein biosynthesis 2482:10.1002/ajmg.a.36703 1480:10.3390/ijms20040939 1048:10.1093/nar/12.2.857 464:Consensus sequences 424:campomelic dysplasia 2925:1990PNAS...87.8301K 2250:1984Natur.308..241K 2144:2015PLoSO..1038473C 2097:10.1021/bi00477a001 1746:2000Natur.403..332P 1695:1988Sci...242...93C 1632:1995PNAS...92.2662K 1538:2014PLoSO...9j8475G 1416:1979Natur.280...82K 1167:1984Natur.308..241K 454: 443:H. sapiens HBB, HBD 3766:Ribosomal Proteins 1989:10.1007/bf00539058 661:Terrestrial plants 452: 420:open reading frame 375: 257: 209: 33:nucleic acid motif 4705: 4704: 4661: 4660: 4657: 4656: 4653: 4652: 4233: 4232: 3722: 3721: 3646:​Eukaryotic 3583:Elongation factor 3577: 3576: 3573: 3572: 3110:Initiation factor 2716:Toxoplasma gondii 2671:Nucleic Acids Res 2615:Nucleic Acids Res 2566:Nucleic Acids Res 2476:(11): 2732–2738. 2244:(5956): 241–246. 2091:(25): 5881–5889. 2038:(18): 2396–2413. 1883:(13): 1465–1477. 1740:(6767): 332–335. 1161:(5956): 241–246. 1104:(20): 8125–8148. 1098:Nucleic Acids Res 993:(12): 1009–1021. 704: 703: 618:Toxoplasma gondii 588:Malarial protozoa 447:R. norvegicus Hbb 290:ribosomal complex 246:7-methylguanosine 220:assembles on the 212:Ribosome assembly 4725: 4244: 3780: 3771: 3645: 3592: 3588: 3558: 3519: 3431: 3349: 3268: 3222: 3213: 3115: 3106: 3071: 3064: 3057: 3048: 3042: 3032: 2999: 2989: 2956: 2946: 2936: 2894: 2893: 2891: 2881: 2856: 2850: 2849: 2839: 2807: 2801: 2800: 2790: 2758: 2752: 2751: 2711: 2705: 2704: 2694: 2662: 2649: 2648: 2638: 2606: 2600: 2599: 2589: 2557: 2551: 2550: 2540: 2516: 2510: 2509: 2464: 2458: 2457: 2447: 2422:(6): 3120–3129. 2407: 2401: 2400: 2379: 2373: 2372: 2362: 2343:10.1002/mgg3.282 2322: 2313: 2312: 2292: 2286: 2285: 2258:10.1038/308241a0 2233: 2227: 2226: 2182: 2176: 2175: 2165: 2155: 2123: 2117: 2116: 2080: 2074: 2073: 2063: 2023: 2017: 2016: 1972: 1966: 1965: 1955: 1915: 1909: 1908: 1872: 1866: 1865: 1837: 1831: 1830: 1812: 1788: 1782: 1781: 1754:10.1038/35002118 1729: 1723: 1722: 1678: 1672: 1671: 1661: 1643: 1626:(7): 2662–2666. 1611: 1605: 1604: 1576: 1570: 1569: 1559: 1549: 1517: 1511: 1510: 1500: 1482: 1458: 1452: 1451: 1424:10.1038/280082a0 1399: 1393: 1392: 1374: 1350: 1344: 1343: 1333: 1315: 1291: 1285: 1284: 1248: 1242: 1241: 1204:Kozak M (1986). 1201: 1195: 1194: 1175:10.1038/308241a0 1150: 1144: 1138: 1132: 1131: 1121: 1089: 1078: 1077: 1067: 1027: 1021: 1020: 1002: 978: 972: 971: 953: 929: 916: 915: 879: 873: 872: 862: 822: 813: 812: 802: 762: 700: 673: 655: 640:Trypanosomatidae 634: 608: 582: 561: 535: 509: 483: 455: 311:hydrogen bonding 201:initiation codon 105: 4733: 4732: 4728: 4727: 4726: 4724: 4723: 4722: 4708: 4707: 4706: 4701: 4649: 4463: 4229: 4041: 3760: 3718: 3639: 3569: 3552: 3547: 3513: 3508: 3425: 3420: 3343: 3338: 3262: 3257: 3216: 3202: 3169: 3141: 3097: 3075: 3045: 3002: 2959: 2906: 2902: 2900:Further reading 2897: 2858: 2857: 2853: 2809: 2808: 2804: 2760: 2759: 2755: 2713: 2712: 2708: 2677:(10): 2715–20. 2664: 2663: 2652: 2608: 2607: 2603: 2559: 2558: 2554: 2518: 2517: 2513: 2466: 2465: 2461: 2409: 2408: 2404: 2381: 2380: 2376: 2324: 2323: 2316: 2294: 2293: 2289: 2235: 2234: 2230: 2184: 2183: 2179: 2138:(9): e0138473. 2125: 2124: 2120: 2082: 2081: 2077: 2025: 2024: 2020: 1974: 1973: 1969: 1917: 1916: 1912: 1874: 1873: 1869: 1839: 1838: 1834: 1790: 1789: 1785: 1731: 1730: 1726: 1689:(4875): 93–97. 1680: 1679: 1675: 1613: 1612: 1608: 1578: 1577: 1573: 1519: 1518: 1514: 1460: 1459: 1455: 1410:(5717): 82–85. 1401: 1400: 1396: 1352: 1351: 1347: 1293: 1292: 1288: 1250: 1249: 1245: 1203: 1202: 1198: 1152: 1151: 1147: 1143:, NC-IUB, 1984. 1139: 1135: 1091: 1090: 1081: 1029: 1028: 1024: 980: 979: 975: 931: 930: 919: 881: 880: 876: 824: 823: 816: 764: 763: 748: 744: 709: 690: 667: 649: 628: 602: 576: 555: 529: 503: 477: 450: 436: 351: 319: 214: 99: 82: 25:Kozak consensus 17: 12: 11: 5: 4731: 4729: 4721: 4720: 4710: 4709: 4703: 4702: 4700: 4699: 4690: 4685: 4680: 4675: 4669: 4667: 4666:Other concepts 4663: 4662: 4659: 4658: 4655: 4654: 4651: 4650: 4648: 4647: 4642: 4637: 4632: 4627: 4622: 4617: 4612: 4607: 4602: 4597: 4592: 4587: 4582: 4577: 4572: 4567: 4562: 4557: 4552: 4547: 4542: 4537: 4532: 4527: 4522: 4517: 4512: 4507: 4502: 4497: 4492: 4487: 4482: 4477: 4471: 4469: 4465: 4464: 4462: 4461: 4456: 4451: 4446: 4441: 4436: 4431: 4426: 4421: 4416: 4411: 4406: 4401: 4396: 4391: 4386: 4381: 4376: 4371: 4366: 4361: 4356: 4351: 4346: 4341: 4336: 4331: 4326: 4321: 4316: 4311: 4306: 4301: 4296: 4291: 4286: 4281: 4276: 4271: 4266: 4261: 4256: 4250: 4248: 4241: 4235: 4234: 4231: 4230: 4228: 4227: 4222: 4217: 4212: 4207: 4202: 4197: 4192: 4187: 4182: 4177: 4172: 4167: 4162: 4157: 4152: 4147: 4142: 4137: 4132: 4127: 4122: 4117: 4112: 4107: 4102: 4097: 4092: 4087: 4072: 4067: 4062: 4057: 4051: 4049: 4043: 4042: 4040: 4039: 4034: 4029: 4024: 4019: 4014: 4009: 4004: 3999: 3994: 3989: 3984: 3979: 3974: 3969: 3964: 3959: 3954: 3949: 3944: 3939: 3934: 3929: 3924: 3919: 3914: 3909: 3904: 3899: 3894: 3889: 3884: 3879: 3874: 3869: 3864: 3859: 3854: 3849: 3844: 3839: 3834: 3829: 3824: 3819: 3814: 3809: 3804: 3799: 3794: 3788: 3786: 3777: 3768: 3762: 3761: 3759: 3758: 3757: 3756: 3751: 3743: 3742: 3741: 3732: 3730: 3728:Release factor 3724: 3723: 3720: 3719: 3717: 3716: 3711: 3710: 3709: 3704: 3699: 3694: 3693: 3692: 3687: 3682: 3672: 3671: 3670: 3665: 3649: 3647: 3641: 3640: 3638: 3637: 3632: 3627: 3622: 3617: 3612: 3607: 3602: 3596: 3594: 3585: 3579: 3578: 3575: 3574: 3571: 3570: 3568: 3567: 3561: 3559: 3549: 3548: 3546: 3545: 3540: 3539: 3538: 3528: 3522: 3520: 3510: 3509: 3507: 3506: 3501: 3496: 3495: 3494: 3489: 3484: 3474: 3473: 3472: 3467: 3457: 3456: 3455: 3450: 3445: 3434: 3432: 3422: 3421: 3419: 3418: 3413: 3408: 3403: 3398: 3393: 3388: 3383: 3378: 3373: 3368: 3363: 3358: 3352: 3350: 3340: 3339: 3337: 3336: 3331: 3330: 3329: 3324: 3319: 3314: 3309: 3299: 3294: 3289: 3284: 3283: 3282: 3271: 3269: 3259: 3258: 3256: 3255: 3254: 3253: 3243: 3242: 3241: 3236: 3225: 3223: 3210: 3204: 3203: 3201: 3200: 3195: 3190: 3185: 3179: 3177: 3171: 3170: 3168: 3167: 3162: 3157: 3151: 3149: 3143: 3142: 3140: 3139: 3134: 3129: 3123: 3121: 3112: 3103: 3099: 3098: 3076: 3074: 3073: 3066: 3059: 3051: 3044: 3043: 3000: 2972:(4): 887–903. 2957: 2919:(21): 8301–5. 2903: 2901: 2898: 2896: 2895: 2851: 2822:(2): 435–446. 2802: 2753: 2726:(3): 309–311. 2706: 2650: 2621:(8): 3581–93. 2601: 2572:(4): 1353–61. 2552: 2511: 2459: 2402: 2374: 2337:(3): 261–268. 2314: 2287: 2228: 2193:(2): 283–292. 2177: 2118: 2075: 2018: 1983:(2): 103–115. 1967: 1930:(3): 434–467. 1910: 1867: 1832: 1803:(2): 251–262. 1797:Molecular Cell 1783: 1724: 1673: 1606: 1587:(1): 779–812. 1571: 1532:(9): e108475. 1512: 1453: 1394: 1365:(7): 837–840. 1359:Bioinformatics 1345: 1286: 1243: 1196: 1145: 1133: 1079: 1042:(2): 857–872. 1022: 973: 917: 890:(2): 187–208. 874: 814: 777:(2): 229–241. 745: 743: 740: 739: 738: 732: 722: 716: 708: 705: 702: 701: 688: 683: 675: 674: 665: 663: 657: 656: 647: 642: 636: 635: 626: 621: 610: 609: 600: 595: 584: 583: 574: 569: 563: 562: 553: 548: 537: 536: 527: 522: 511: 510: 501: 496: 485: 484: 475: 473: 466: 465: 462: 459: 440: 435: 432: 350: 347: 318: 315: 302:leaky scanning 278:tRNA anticodon 213: 210: 172: 171: 168: 157: 138: 127: 81: 78: 29:Kozak sequence 15: 13: 10: 9: 6: 4: 3: 2: 4730: 4719: 4716: 4715: 4713: 4698: 4694: 4691: 4689: 4686: 4684: 4681: 4679: 4678:Reading frame 4676: 4674: 4671: 4670: 4668: 4664: 4646: 4643: 4641: 4638: 4636: 4633: 4631: 4628: 4626: 4623: 4621: 4618: 4616: 4613: 4611: 4608: 4606: 4603: 4601: 4598: 4596: 4593: 4591: 4588: 4586: 4583: 4581: 4578: 4576: 4573: 4571: 4568: 4566: 4563: 4561: 4558: 4556: 4553: 4551: 4548: 4546: 4543: 4541: 4538: 4536: 4533: 4531: 4528: 4526: 4523: 4521: 4518: 4516: 4513: 4511: 4508: 4506: 4503: 4501: 4498: 4496: 4493: 4491: 4488: 4486: 4483: 4481: 4478: 4476: 4473: 4472: 4470: 4466: 4460: 4457: 4455: 4452: 4450: 4447: 4445: 4442: 4440: 4437: 4435: 4432: 4430: 4427: 4425: 4422: 4420: 4417: 4415: 4412: 4410: 4407: 4405: 4402: 4400: 4397: 4395: 4392: 4390: 4387: 4385: 4382: 4380: 4377: 4375: 4372: 4370: 4367: 4365: 4362: 4360: 4357: 4355: 4352: 4350: 4347: 4345: 4342: 4340: 4337: 4335: 4332: 4330: 4327: 4325: 4322: 4320: 4317: 4315: 4312: 4310: 4307: 4305: 4302: 4300: 4297: 4295: 4292: 4290: 4287: 4285: 4282: 4280: 4277: 4275: 4272: 4270: 4267: 4265: 4262: 4260: 4257: 4255: 4252: 4251: 4249: 4245: 4242: 4240: 4239:Mitochondrial 4236: 4226: 4223: 4221: 4218: 4216: 4213: 4211: 4208: 4206: 4203: 4201: 4198: 4196: 4193: 4191: 4188: 4186: 4183: 4181: 4178: 4176: 4173: 4171: 4168: 4166: 4163: 4161: 4158: 4156: 4153: 4151: 4148: 4146: 4143: 4141: 4138: 4136: 4133: 4131: 4128: 4126: 4123: 4121: 4118: 4116: 4113: 4111: 4108: 4106: 4103: 4101: 4098: 4096: 4093: 4091: 4088: 4085: 4081: 4077: 4073: 4071: 4068: 4066: 4063: 4061: 4058: 4056: 4053: 4052: 4050: 4048: 4044: 4038: 4035: 4033: 4030: 4028: 4025: 4023: 4020: 4018: 4015: 4013: 4010: 4008: 4005: 4003: 4000: 3998: 3995: 3993: 3990: 3988: 3985: 3983: 3980: 3978: 3975: 3973: 3970: 3968: 3965: 3963: 3960: 3958: 3955: 3953: 3950: 3948: 3945: 3943: 3940: 3938: 3935: 3933: 3930: 3928: 3925: 3923: 3920: 3918: 3915: 3913: 3910: 3908: 3905: 3903: 3900: 3898: 3895: 3893: 3890: 3888: 3885: 3883: 3880: 3878: 3875: 3873: 3870: 3868: 3865: 3863: 3860: 3858: 3855: 3853: 3850: 3848: 3845: 3843: 3840: 3838: 3835: 3833: 3830: 3828: 3825: 3823: 3820: 3818: 3815: 3813: 3810: 3808: 3805: 3803: 3800: 3798: 3795: 3793: 3790: 3789: 3787: 3785: 3781: 3778: 3776: 3772: 3769: 3767: 3763: 3755: 3752: 3750: 3747: 3746: 3744: 3740: 3737: 3736: 3734: 3733: 3731: 3729: 3725: 3715: 3712: 3708: 3705: 3703: 3700: 3698: 3695: 3691: 3688: 3686: 3683: 3681: 3678: 3677: 3676: 3673: 3669: 3666: 3664: 3661: 3660: 3659: 3656: 3655: 3654: 3651: 3650: 3648: 3642: 3636: 3633: 3631: 3628: 3626: 3623: 3621: 3618: 3616: 3613: 3611: 3608: 3606: 3603: 3601: 3598: 3597: 3595: 3589: 3586: 3584: 3580: 3566: 3563: 3562: 3560: 3557: 3556: 3550: 3544: 3541: 3537: 3534: 3533: 3532: 3529: 3527: 3524: 3523: 3521: 3518: 3517: 3511: 3505: 3502: 3500: 3497: 3493: 3490: 3488: 3485: 3483: 3480: 3479: 3478: 3475: 3471: 3468: 3466: 3463: 3462: 3461: 3458: 3454: 3451: 3449: 3446: 3444: 3441: 3440: 3439: 3436: 3435: 3433: 3430: 3429: 3423: 3417: 3414: 3412: 3409: 3407: 3404: 3402: 3399: 3397: 3394: 3392: 3389: 3387: 3384: 3382: 3379: 3377: 3374: 3372: 3369: 3367: 3364: 3362: 3359: 3357: 3354: 3353: 3351: 3348: 3347: 3341: 3335: 3332: 3328: 3325: 3323: 3320: 3318: 3315: 3313: 3310: 3308: 3305: 3304: 3303: 3300: 3298: 3295: 3293: 3290: 3288: 3285: 3281: 3278: 3277: 3276: 3273: 3272: 3270: 3267: 3266: 3260: 3252: 3249: 3248: 3247: 3244: 3240: 3237: 3235: 3232: 3231: 3230: 3227: 3226: 3224: 3221: 3220: 3214: 3211: 3209: 3205: 3199: 3196: 3194: 3191: 3189: 3186: 3184: 3181: 3180: 3178: 3176: 3172: 3166: 3163: 3161: 3158: 3156: 3153: 3152: 3150: 3148: 3147:Mitochondrial 3144: 3138: 3135: 3133: 3130: 3128: 3125: 3124: 3122: 3120: 3116: 3113: 3111: 3107: 3104: 3100: 3095: 3091: 3087: 3083: 3079: 3072: 3067: 3065: 3060: 3058: 3053: 3052: 3049: 3040: 3036: 3031: 3026: 3022: 3018: 3015:(1–2): 1–34. 3014: 3010: 3006: 3001: 2997: 2993: 2988: 2983: 2979: 2975: 2971: 2967: 2963: 2958: 2954: 2950: 2945: 2940: 2935: 2930: 2926: 2922: 2918: 2914: 2910: 2905: 2904: 2899: 2890: 2885: 2880: 2875: 2871: 2867: 2863: 2855: 2852: 2847: 2843: 2838: 2833: 2829: 2825: 2821: 2817: 2815: 2814:Chlamydomonas 2806: 2803: 2798: 2794: 2789: 2784: 2780: 2776: 2772: 2768: 2764: 2757: 2754: 2749: 2745: 2741: 2737: 2733: 2729: 2725: 2721: 2717: 2710: 2707: 2702: 2698: 2693: 2688: 2684: 2680: 2676: 2672: 2668: 2661: 2659: 2657: 2655: 2651: 2646: 2642: 2637: 2632: 2628: 2624: 2620: 2616: 2612: 2605: 2602: 2597: 2593: 2588: 2583: 2579: 2575: 2571: 2567: 2563: 2556: 2553: 2548: 2544: 2539: 2534: 2531:(2): 92–101. 2530: 2526: 2522: 2515: 2512: 2507: 2503: 2499: 2495: 2491: 2487: 2483: 2479: 2475: 2471: 2463: 2460: 2455: 2451: 2446: 2441: 2437: 2433: 2429: 2425: 2421: 2417: 2413: 2406: 2403: 2398: 2394: 2390: 2386: 2378: 2375: 2370: 2366: 2361: 2356: 2352: 2348: 2344: 2340: 2336: 2332: 2328: 2321: 2319: 2315: 2310: 2306: 2302: 2298: 2291: 2288: 2283: 2279: 2275: 2271: 2267: 2263: 2259: 2255: 2251: 2247: 2243: 2239: 2232: 2229: 2224: 2220: 2216: 2212: 2208: 2204: 2200: 2196: 2192: 2188: 2181: 2178: 2173: 2169: 2164: 2159: 2154: 2149: 2145: 2141: 2137: 2133: 2129: 2122: 2119: 2114: 2110: 2106: 2102: 2098: 2094: 2090: 2086: 2079: 2076: 2071: 2067: 2062: 2057: 2053: 2049: 2045: 2041: 2037: 2033: 2029: 2022: 2019: 2014: 2010: 2006: 2002: 1998: 1994: 1990: 1986: 1982: 1978: 1971: 1968: 1963: 1959: 1954: 1949: 1945: 1941: 1937: 1933: 1929: 1925: 1921: 1914: 1911: 1906: 1902: 1898: 1894: 1890: 1886: 1882: 1878: 1871: 1868: 1863: 1859: 1855: 1851: 1848:(3): 565–76. 1847: 1843: 1836: 1833: 1828: 1824: 1820: 1816: 1811: 1806: 1802: 1798: 1794: 1787: 1784: 1779: 1775: 1771: 1767: 1763: 1759: 1755: 1751: 1747: 1743: 1739: 1735: 1728: 1725: 1720: 1716: 1712: 1708: 1704: 1700: 1696: 1692: 1688: 1684: 1677: 1674: 1669: 1665: 1660: 1655: 1651: 1647: 1642: 1637: 1633: 1629: 1625: 1621: 1617: 1610: 1607: 1602: 1598: 1594: 1590: 1586: 1582: 1575: 1572: 1567: 1563: 1558: 1553: 1548: 1543: 1539: 1535: 1531: 1527: 1523: 1516: 1513: 1508: 1504: 1499: 1494: 1490: 1486: 1481: 1476: 1472: 1468: 1464: 1457: 1454: 1449: 1445: 1441: 1437: 1433: 1429: 1425: 1421: 1417: 1413: 1409: 1405: 1398: 1395: 1390: 1386: 1382: 1378: 1373: 1368: 1364: 1360: 1356: 1349: 1346: 1341: 1337: 1332: 1327: 1323: 1319: 1314: 1309: 1305: 1301: 1297: 1290: 1287: 1282: 1278: 1274: 1270: 1266: 1262: 1258: 1254: 1253:Plant Science 1247: 1244: 1239: 1235: 1231: 1227: 1223: 1219: 1216:(2): 283–92. 1215: 1211: 1207: 1200: 1197: 1192: 1188: 1184: 1180: 1176: 1172: 1168: 1164: 1160: 1156: 1149: 1146: 1142: 1137: 1134: 1129: 1125: 1120: 1115: 1111: 1107: 1103: 1099: 1095: 1088: 1086: 1084: 1080: 1075: 1071: 1066: 1061: 1057: 1053: 1049: 1045: 1041: 1037: 1033: 1026: 1023: 1018: 1014: 1010: 1006: 1001: 996: 992: 988: 984: 977: 974: 969: 965: 961: 957: 952: 947: 944:(2): 224–31. 943: 939: 938:Br J Haematol 935: 928: 926: 924: 922: 918: 913: 909: 905: 901: 897: 893: 889: 885: 878: 875: 870: 866: 861: 856: 852: 848: 844: 840: 836: 832: 828: 821: 819: 815: 810: 806: 801: 796: 792: 788: 784: 780: 776: 772: 768: 761: 759: 757: 755: 753: 751: 747: 741: 736: 733: 730: 726: 723: 720: 717: 714: 711: 710: 706: 698: 694: 689: 687: 684: 681: 677: 676: 671: 666: 664: 662: 659: 658: 653: 648: 646: 643: 641: 638: 637: 632: 627: 625: 622: 619: 615: 612: 611: 606: 601: 599: 596: 593: 589: 586: 585: 580: 575: 573: 570: 568: 565: 564: 559: 554: 552: 549: 546: 542: 539: 538: 533: 528: 526: 523: 520: 516: 515:Budding yeast 513: 512: 507: 502: 500: 497: 494: 490: 487: 486: 481: 476: 474: 472:(Kozak 1987) 471: 468: 467: 463: 460: 457: 456: 448: 444: 439: 433: 431: 429: 425: 421: 417: 416: 409: 406: 402: 398: 397: 392: 387: 383: 381: 372: 367: 363: 361: 357: 348: 346: 344: 340: 336: 332: 329: 325: 316: 314: 312: 306: 303: 298: 293: 291: 287: 283: 279: 274: 270: 266: 262: 253: 249: 247: 243: 239: 235: 231: 227: 223: 219: 211: 206: 202: 198: 197:sequence logo 193: 189: 186: 181: 177: 169: 166: 162: 158: 155: 151: 147: 143: 139: 136: 132: 128: 125: 122:, coding for 121: 117: 113: 112: 111: 109: 103: 97: 96: 91: 87: 79: 77: 75: 71: 70:messenger RNA 67: 63: 58: 56: 55:Marilyn Kozak 52: 48: 45: 41: 38: 34: 30: 26: 22: 4696: 3745:Class 2/RF3 3553: 3514: 3426: 3344: 3263: 3217: 3012: 3008: 2969: 2965: 2916: 2912: 2869: 2865: 2854: 2819: 2813: 2805: 2770: 2766: 2756: 2723: 2719: 2715: 2709: 2674: 2670: 2618: 2614: 2604: 2569: 2565: 2555: 2528: 2524: 2514: 2473: 2469: 2462: 2419: 2415: 2405: 2388: 2384: 2377: 2334: 2330: 2300: 2290: 2241: 2237: 2231: 2190: 2186: 2180: 2135: 2131: 2121: 2088: 2085:Biochemistry 2084: 2078: 2035: 2031: 2021: 1980: 1976: 1970: 1927: 1923: 1913: 1880: 1876: 1870: 1845: 1841: 1835: 1800: 1796: 1786: 1737: 1733: 1727: 1686: 1682: 1676: 1623: 1619: 1609: 1584: 1580: 1574: 1529: 1525: 1515: 1470: 1466: 1456: 1407: 1403: 1397: 1362: 1358: 1348: 1303: 1299: 1289: 1259:(1): 89–98. 1256: 1252: 1246: 1213: 1209: 1199: 1158: 1154: 1148: 1136: 1101: 1097: 1039: 1035: 1025: 990: 986: 976: 941: 937: 887: 883: 877: 834: 830: 774: 770: 696: 692: 679: 669: 651: 630: 617: 604: 591: 578: 557: 544: 531: 518: 505: 492: 479: 446: 442: 437: 430:expression. 427: 413: 410: 404: 400: 394: 388: 384: 376: 370: 359: 355: 352: 333: 320: 307: 294: 258: 215: 184: 179: 175: 173: 134: 115: 101: 93: 89: 83: 59: 28: 24: 20: 18: 4683:Start codon 4468:28S subunit 4247:39S subunit 4047:40S subunit 3784:60S subunit 3775:Cytoplasmic 3239:SUI1 family 3082:translation 2773:(1): 43–8. 2391:: 186–191. 2301:GeneReviews 837:(1): 1–34. 735:Translation 729:prokaryotes 686:Chlorophyta 624:Apicomplexa 598:Apicomplexa 232:and eIF1A, 222:start codon 120:start codon 106:-3' (IUPAC 100:(gcc)gccRcc 40:translation 4688:Stop codon 4032:RRP15-like 3842:RPL10-like 3591:Bacterial/ 3208:Eukaryotic 3094:eukaryotic 1473:(4): 939. 742:References 678:Microalga 645:Euglenozoa 614:Toxoplasma 592:Plasmodium 572:Ciliophora 541:Slime mold 525:Ascomycota 499:Arthropoda 493:Drosophila 470:Vertebrate 339:leaderless 124:Methionine 116:underlined 108:nucleobase 51:eukaryotes 44:eukaryotic 3644:Archaeal/ 3119:Bacterial 3086:bacterial 2490:1552-4833 2436:0270-7306 2351:2324-9269 2266:1476-4687 2207:0092-8674 2105:0006-2960 2052:0890-9369 1997:0301-4851 1944:1092-2172 1819:1097-2765 1762:1476-4687 1711:0036-8075 1650:0027-8424 1489:1422-0067 1432:1476-4687 1381:1367-4803 1322:1754-1611 1273:0168-9452 1056:0305-1048 1009:0968-0004 904:0378-1119 851:0378-1119 791:0021-9525 551:Amoebozoa 489:Fruit fly 449:, etc.) 265:Ddx3/Ded1 4712:Category 3735:Class 1 3175:Archaeal 3102:Proteins 3090:archaeal 3039:12459250 2846:26701783 2748:10433917 2718:genes". 2547:20417269 2525:Genomics 2506:32674053 2498:25099673 2369:28546996 2309:20301724 2223:15613863 2172:26379277 2132:PLOS ONE 2013:25936805 1962:21885680 1905:14157104 1897:23379522 1862:15498463 1842:Genomics 1827:16246727 1770:10659855 1601:24499181 1566:25248153 1526:PLOS ONE 1507:30795538 1440:15305588 1389:15531618 1340:28835771 1281:10725562 1238:15613863 1017:31353284 968:86704907 960:14687034 912:10395892 869:12459250 719:Ribosome 707:See also 356:in vitro 335:Archaeal 218:ribosome 80:Sequence 76:(IRES). 4037:RSL24D1 3714:a/eEF-2 3653:a/eEF-1 3030:7126118 2996:1955461 2987:2289952 2953:2236042 2921:Bibcode 2889:7896298 2837:4751561 2797:3556162 2740:9089733 2701:2041747 2645:3554144 2596:3822832 2454:9584153 2360:5441400 2282:4366379 2274:6700727 2246:Bibcode 2215:3943125 2163:4574771 2140:Bibcode 2113:2200518 2070:9308967 2005:3221841 1953:3165540 1778:3739106 1742:Bibcode 1719:3051379 1691:Bibcode 1683:Science 1668:7708701 1628:Bibcode 1557:4172775 1534:Bibcode 1498:6412873 1448:4319259 1412:Bibcode 1331:5563945 1230:3943125 1191:4366379 1183:6700727 1163:Bibcode 1128:3313277 1074:6694911 860:7126118 809:2645293 800:2115416 567:Ciliate 461:Phylum 360:in vivo 345:genes. 154:adenine 150:guanine 146:adenine 95:Xenopus 37:protein 31:) is a 4205:RPS27A 4145:RPS15A 4084:RPS4Y2 4080:RPS4Y1 4074:RPS4 ( 3992:RPL37A 3982:RPL36A 3972:RPL35A 3932:RPL27A 3912:RPL23A 3887:RPL18A 3862:RPL13A 3837:RPL10A 3292:γ 3287:β 3280:kinase 3275:α 3037:  3027:  2994:  2984:  2951:  2941:  2886:  2844:  2834:  2795:  2788:553354 2785:  2767:EMBO J 2746:  2738:  2699:  2692:328191 2689:  2643:  2636:340751 2633:  2594:  2587:340553 2584:  2545:  2504:  2496:  2488:  2452:  2445:108894 2442:  2434:  2367:  2357:  2349:  2307:  2280:  2272:  2264:  2238:Nature 2221:  2213:  2205:  2170:  2160:  2111:  2103:  2068:  2061:316512 2058:  2050:  2011:  2003:  1995:  1960:  1950:  1942:  1903:  1895:  1860:  1825:  1817:  1776:  1768:  1760:  1734:Nature 1717:  1709:  1666:  1656:  1648:  1599:  1564:  1554:  1505:  1495:  1487:  1446:  1438:  1430:  1404:Nature 1387:  1379:  1338:  1328:  1320:  1306:: 25. 1279:  1271:  1236:  1228:  1189:  1181:  1155:Nature 1126:  1119:306349 1116:  1072:  1065:318541 1062:  1054:  1015:  1007:  966:  958:  910:  902:  867:  857:  849:  807:  797:  789:  668:acAACA 650:nnnAnn 629:gncAaa 603:taaAAA 594:spp.) 577:nTaAAA 556:aaaAAA 530:aAaAaA 504:atMAAM 495:spp.) 478:gccRcc 458:Biota 142:purine 72:or an 66:5′ cap 4475:MRPS1 4254:MRPL1 4225:RACK1 4220:RPS30 4215:RPS29 4210:RPS28 4200:RPS27 4195:RPS26 4190:RPS25 4185:RPS24 4180:RPS23 4175:RPS21 4170:RPS20 4165:RPS19 4160:RPS18 4155:RPS17 4150:RPS16 4140:RPS15 4135:RPS14 4130:RPS13 4125:RPS12 4120:RPS11 4115:RPS10 4076:RPS4X 4070:RPS3A 4027:RPLP2 4022:RPLP1 4017:RPLP0 4012:RPL41 4007:RPL40 4002:RPL39 3997:RPL38 3987:RPL37 3977:RPL36 3967:RPL35 3962:RPL34 3957:RPL32 3952:RPL31 3947:RPL30 3942:RPL29 3937:RPL28 3927:RPL27 3922:RPL26 3917:RPL24 3907:RPL23 3902:RPL22 3897:RPL21 3892:RPL19 3882:RPL18 3877:RPL17 3872:RPL15 3867:RPL14 3857:RPL13 3852:RPL12 3847:RPL11 3832:RPL10 3817:RPL7A 3754:GSPT2 3749:GSPT1 3605:EF-Ts 3600:EF-Tu 3531:EIF5A 3334:eIF2D 3302:eIF2B 3297:eIF2A 3246:eIF1A 3165:MTIF3 3160:MTIF2 3155:MTIF1 2944:54943 2872:(7). 2744:S2CID 2502:S2CID 2385:Blood 2278:S2CID 2219:S2CID 2009:S2CID 1901:S2CID 1774:S2CID 1659:42278 1444:S2CID 1234:S2CID 1187:S2CID 964:S2CID 405:GATA4 401:GATA4 396:GATA4 373:gene. 343:Hsp70 297:Lmx1b 261:Dhx29 205:mRNAs 131:bases 68:of a 4110:RPS9 4105:RPS8 4100:RPS7 4095:RPS6 4090:RPS5 4065:RPS3 4060:RPS2 4055:RPSA 3827:RPL9 3822:RPL8 3812:RPL7 3807:RPL6 3802:RPL5 3797:RPL4 3792:RPL3 3739:eRF1 3635:GFM2 3630:GFM1 3625:TSFM 3620:EF-P 3615:EF-4 3610:EF-G 3565:EIF6 3555:eIF6 3526:EIF5 3516:eIF5 3428:eIF4 3346:eIF3 3265:eIF2 3229:eIF1 3219:eIF1 3198:aIF6 3193:aIF5 3188:aIF2 3183:aIF1 3035:PMID 3009:Gene 2992:PMID 2949:PMID 2842:PMID 2793:PMID 2736:PMID 2697:PMID 2641:PMID 2592:PMID 2543:PMID 2494:PMID 2486:ISSN 2450:PMID 2432:ISSN 2365:PMID 2347:ISSN 2305:PMID 2270:PMID 2262:ISSN 2211:PMID 2203:ISSN 2187:Cell 2168:PMID 2109:PMID 2101:ISSN 2066:PMID 2048:ISSN 2001:PMID 1993:ISSN 1958:PMID 1940:ISSN 1893:PMID 1858:PMID 1823:PMID 1815:ISSN 1766:PMID 1758:ISSN 1715:PMID 1707:ISSN 1664:PMID 1646:ISSN 1597:PMID 1562:PMID 1503:PMID 1485:ISSN 1436:PMID 1428:ISSN 1385:PMID 1377:ISSN 1336:PMID 1318:ISSN 1277:PMID 1269:ISSN 1226:PMID 1210:Cell 1179:PMID 1124:PMID 1070:PMID 1052:ISSN 1013:PMID 1005:ISSN 956:PMID 908:PMID 900:ISSN 884:Gene 865:PMID 847:ISSN 831:Gene 805:PMID 787:ISSN 713:mRNA 428:SOX9 415:SOX9 371:SOX9 358:and 282:eIF5 269:eIF4 267:and 263:and 238:eIF3 234:eIF5 230:eIF1 226:eIF2 216:The 174:The 165:base 161:base 135:i.e. 114:The 90:i.e. 47:mRNA 19:The 3137:IF3 3132:IF2 3127:IF1 3025:PMC 3017:doi 3013:299 2982:PMC 2974:doi 2970:115 2939:PMC 2929:doi 2884:PMC 2874:doi 2870:118 2832:PMC 2824:doi 2783:PMC 2775:doi 2728:doi 2687:PMC 2679:doi 2631:PMC 2623:doi 2582:PMC 2574:doi 2533:doi 2478:doi 2474:164 2440:PMC 2424:doi 2393:doi 2355:PMC 2339:doi 2254:doi 2242:308 2195:doi 2158:PMC 2148:doi 2093:doi 2056:PMC 2040:doi 1985:doi 1948:PMC 1932:doi 1885:doi 1850:doi 1805:doi 1750:doi 1738:403 1699:doi 1687:242 1654:PMC 1636:doi 1589:doi 1552:PMC 1542:doi 1493:PMC 1475:doi 1420:doi 1408:280 1367:doi 1326:PMC 1308:doi 1261:doi 1257:154 1218:doi 1171:doi 1159:308 1114:PMC 1106:doi 1060:PMC 1044:doi 995:doi 946:doi 942:124 892:doi 888:234 855:PMC 839:doi 835:299 795:PMC 779:doi 775:108 699:Gcg 697:ATG 691:gcc 670:ATG 652:ATG 631:ATG 607:Aan 605:ATG 581:Rct 579:ATG 560:Rna 558:ATG 534:TCt 532:ATG 508:amc 506:ATG 480:ATG 328:16S 180:GUG 176:AUG 148:or 102:AUG 27:or 4714:: 4645:35 4640:34 4635:33 4630:32 4625:31 4620:30 4615:29 4610:28 4605:27 4600:26 4595:25 4590:24 4585:23 4580:22 4575:21 4570:20 4565:19 4560:18 4555:17 4550:16 4545:15 4540:14 4535:13 4530:12 4525:11 4520:10 4459:42 4454:41 4449:40 4444:39 4439:38 4434:37 4429:36 4424:35 4419:34 4414:33 4409:32 4404:31 4399:30 4394:29 4389:28 4384:27 4379:26 4374:25 4369:24 4364:23 4359:22 4354:21 4349:20 4344:19 4339:18 4334:17 4329:16 4324:15 4319:14 4314:13 4309:12 4304:11 4299:10 4082:, 4078:, 3690:P3 3685:P2 3680:P1 3658:A1 3543:5B 3460:E1 3092:, 3088:, 3080:: 3033:. 3023:. 3011:. 3007:. 2990:. 2980:. 2968:. 2964:. 2947:. 2937:. 2927:. 2917:87 2915:. 2911:. 2882:. 2868:. 2864:. 2840:. 2830:. 2820:G3 2818:. 2791:. 2781:. 2769:. 2765:. 2742:. 2734:. 2724:83 2722:. 2695:. 2685:. 2675:19 2673:. 2669:. 2653:^ 2639:. 2629:. 2619:15 2617:. 2613:. 2590:. 2580:. 2570:15 2568:. 2564:. 2541:. 2529:96 2527:. 2523:. 2500:. 2492:. 2484:. 2472:. 2448:. 2438:. 2430:. 2420:18 2418:. 2414:. 2389:94 2387:. 2363:. 2353:. 2345:. 2333:. 2329:. 2317:^ 2299:. 2276:. 2268:. 2260:. 2252:. 2240:. 2217:. 2209:. 2201:. 2191:44 2189:. 2166:. 2156:. 2146:. 2136:10 2134:. 2130:. 2107:. 2099:. 2089:29 2087:. 2064:. 2054:. 2046:. 2036:11 2034:. 2030:. 2007:. 1999:. 1991:. 1981:13 1979:. 1956:. 1946:. 1938:. 1928:75 1926:. 1922:. 1899:. 1891:. 1881:77 1879:. 1856:. 1846:84 1844:. 1821:. 1813:. 1801:20 1799:. 1795:. 1772:. 1764:. 1756:. 1748:. 1736:. 1713:. 1705:. 1697:. 1685:. 1662:. 1652:. 1644:. 1634:. 1624:92 1622:. 1618:. 1595:. 1585:83 1583:. 1560:. 1550:. 1540:. 1528:. 1524:. 1501:. 1491:. 1483:. 1471:20 1469:. 1465:. 1442:. 1434:. 1426:. 1418:. 1406:. 1383:. 1375:. 1363:21 1361:. 1357:. 1334:. 1324:. 1316:. 1304:11 1302:. 1298:. 1275:. 1267:. 1255:. 1232:. 1224:. 1214:44 1212:. 1208:. 1185:. 1177:. 1169:. 1157:. 1122:. 1112:. 1102:15 1100:. 1096:. 1082:^ 1068:. 1058:. 1050:. 1040:12 1038:. 1034:. 1011:. 1003:. 991:44 989:. 985:. 962:. 954:. 940:. 936:. 920:^ 906:. 898:. 886:. 863:. 853:. 845:. 833:. 829:. 817:^ 803:. 793:. 785:. 773:. 769:. 749:^ 695:aC 682:) 672:GC 654:nC 620:) 547:) 521:) 445:, 382:. 362:. 240:, 236:, 195:A 133:, 4695:/ 4515:9 4510:8 4505:7 4500:6 4495:5 4490:4 4485:3 4480:2 4294:9 4289:8 4284:7 4279:6 4274:5 4269:4 4264:3 4259:2 4086:) 3707:G 3702:E 3697:D 3675:B 3668:3 3663:2 3536:2 3504:H 3499:B 3492:3 3487:2 3482:1 3477:G 3470:3 3465:2 3453:3 3448:2 3443:1 3438:A 3416:M 3411:L 3406:K 3401:J 3396:I 3391:H 3386:G 3381:F 3376:E 3371:D 3366:C 3361:B 3356:A 3327:5 3322:4 3317:3 3312:2 3307:1 3251:Y 3234:B 3096:) 3084:( 3070:e 3063:t 3056:v 3041:. 3019:: 2998:. 2976:: 2955:. 2931:: 2923:: 2892:. 2876:: 2848:. 2826:: 2799:. 2777:: 2771:6 2750:. 2730:: 2703:. 2681:: 2647:. 2625:: 2598:. 2576:: 2549:. 2535:: 2508:. 2480:: 2456:. 2426:: 2399:. 2395:: 2371:. 2341:: 2335:5 2284:. 2256:: 2248:: 2225:. 2197:: 2174:. 2150:: 2142:: 2115:. 2095:: 2072:. 2042:: 2015:. 1987:: 1964:. 1934:: 1907:. 1887:: 1864:. 1852:: 1829:. 1807:: 1780:. 1752:: 1744:: 1721:. 1701:: 1693:: 1670:. 1638:: 1630:: 1603:. 1591:: 1568:. 1544:: 1536:: 1530:9 1509:. 1477:: 1450:. 1422:: 1414:: 1391:. 1369:: 1342:. 1310:: 1283:. 1263:: 1240:. 1220:: 1193:. 1173:: 1165:: 1130:. 1108:: 1076:. 1046:: 1019:. 997:: 970:. 948:: 914:. 894:: 871:. 841:: 811:. 781:: 731:. 693:A 633:g 616:( 590:( 543:( 517:( 491:( 482:G 185:A 144:( 126:. 104:G 23:(

Index

nucleic acid motif
protein
translation
eukaryotic
mRNA
eukaryotes
Marilyn Kozak
ribosomal binding site
5′ cap
messenger RNA
internal ribosome entry site
site-directed mutagenesis
Xenopus
nucleobase
start codon
Methionine
bases
purine
adenine
guanine
adenine
base
base

sequence logo
initiation codon
mRNAs
ribosome
start codon
eIF2

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