Knowledge (XXG)

Position-effect variegation

Source πŸ“

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packaging the normally euchromatic region. But this model fails to explain some aspects of PEV. For example, variegation can be induced in a gene located several megabases from the heterochromatin-euchromatin breakpoint due to rearrangements in that breakpoint. Also, the austerity of the variegated phenotype can be altered by the distance of the heterochromatic region from the breakpoint.
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According to this model, the heterochromatin forces an altered chromatin conformation on the euchromatic region. Due to this, the transcriptional machinery cannot access the gene which leads to the inhibition of transcription. In other words, the heterochromatin spreads and causes gene silencing by
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genes are the candidates as PEV modifiers, as these genes are involved in chromosome maintenance and repair. Chromosome structure in the vicinity of the breakpoint appears to be an important determinant of the gene inactivation process. Six second chromosomal
647:. the United States of America: Garland Science, Taylor & Francis Group, LLC, an Informa business, 711 Third Avenue, New York, NY 10017, US 3 Park Square, Milton Park, Abingdon, OX14 4RN, UK. 2015. p. 195. 142:
in a particular phenotype i.e., the appearance of irregular patches of different colour(s), due to the expression of the original wild-type gene in some cells of the tissue but not in others, as seen in the eye of
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Typically, the barrier DNA sequences prevent the heterochromatic region from spreading into the euchromatin but they are no longer present in the flies that inherit certain chromosomal rearrangements.
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These two mechanisms affect each other as well. Which mechanism dominates to influence the phenotype depends upon the type of heterochromatin and the intricacy of the rearrangement.
901:"The enhancer of position-effect variegation of Drosophila, E(var)3-93D, codes for a chromatin protein containing a conserved domain common to several transcriptional regulators" 219:
These are interactions between the different heterochromatic regions and the global chromosomal organisation in the interphase nucleus. The rearrangements due to PEV places the
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209, the variegation was significantly suppressed. Also, when homozygous, 2735 and D-1368 and all heteroallelic combinations of its Pcna mutations strongly suppress PEV.
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because it was one of the first organisms on which X-ray irradiation was used as a mutation inducer. X-rays can cause chromosomal rearrangements that can result in PEV.
1251: 1194: 1137: 1072: 1015: 958: 891: 834: 787:"Functional mammalian homologues of the Drosophila PEV-modifier Su(var)3- 9 encode centromere-associated proteins which complex with the heterochromatin component M31" 1204:"The protein encoded by the Drosophila position-effect variegation suppressor gene Su(var)3-9 combines domains of antagonistic regulators of homeotic gene complexes" 223:
in a new compartment of the nucleus where the transcriptional machinery required is not available, thus silencing the gene and modifying the chromatin structure.
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211. A stock was constructed with the replacement of standard X-chromosome with w. It was observed that the suppression of PEV is not a characteristic of
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Aagaard L., Laible G., Selenko P., Schmid M., Dorn R., Schotta G., Kuhfittig S., Wolf A., Lebersorger A., Singh P. B., Reuter G., Jenuwein T. (1999).
1025:"The heterochromatin-associated protein HP-1 is an essential protein in Drosophila with dosage-dependent effects on position-effect variegation" 652: 727:"Mutagen sensitivity and suppression of position-effect variegation result from mutations in mus209, the Drosophila gene encoding PCNA" 155:
However, it is possible that the effect of the silenced gene is not phenotypically visible in some cases. PEV was observed first in
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Tartof, Kenneth D.; Hobbs, Cheryl; Jones, Marilyn (1984-07-01). "A structural basis for variegating position effects".
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Vogel, Maartje J.; Pagie, Ludo; Talhout, Wendy; Nieuwland, Marja; Kerkhoven, Ron M.; van Steensel, Bas (2009-01-29).
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mutations were isolated with w. A copy of wild-type white gene was placed adjacent to heterochromatin. The different
487: 107: 56: 323:. The silencing of euchromatic genes occurs when the genes get placed into a new heterochromatic neighborhood. 101: 75:
gene next to pericentric heterochromatin, or a sequence of repeats that becomes heterochromatic. Normally, the
1265: 483:"High-resolution mapping of heterochromatin redistribution in a Drosophila position-effect variegation model" 148: 24: 1145:
Schotta G., Ebert A., Krauss V., Fischer A., Hoffmann J., Rea S., Jenuwein T., Dorn R., Reuter G. (2002).
496: 332: 1245: 1188: 1131: 1066: 1009: 952: 885: 828: 552: 92: 64: 1147:"Central role of Drosophila SU(VAR)3-9 in histone H3-K9 methylation and heterochromatic gene silencing" 844:"Genetic and molecular complexity of the position effect variegation modifier mod(mdg4) in Drosophila" 912: 36: 501: 91:
gene was expressed in some cells in the eyes and not in others. The mutation was described first by
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is seen. Variegation is, however, observed only in the female having this insertion along with a
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region carrying a fur color gene is inserted onto the X chromosome, variable silencing of the
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of a gene from its original position to somewhere near a heterochromatic region has an
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Ebert A., Schotta G., Lein S., Kubicek S., Krauss V., Jenuwein T., Reuter G. (2004).
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Buchner K., Roth P., Schotta G., Krauss V., Saumweber H., Reuter G., Dorn R. (2000).
695: 220: 87:. In the w mutant, the eye color was variegated (red-white mosaic colored) where the 711: 576: 1123: 668: 68: 441: 1040: 859: 379: 168: 426:"Genomic Imprinting and Position-Effect Variegation in Drosophila melanogaster" 1162: 802: 925: 750: 520: 449: 425: 387: 308: 84: 40: 1202:
Tschiersch B., Hofmann A., Krauss V., Dorn R., Korge G., Reuter G. (1994).
1180: 1082:"SET domain proteins modulate chromatin domains in eu- and heterochromatin" 1001: 877: 820: 538: 467: 405: 1237: 1115: 1097: 1058: 944: 768: 703: 630: 511: 304: 296: 144: 60: 983: 568: 555:(1930). "Types of visible variations induced by X-rays in Drosophila". 424:
Lloyd, Vett K.; Sinclair, Don A.; Grigliatti, Thomas A. (1999-04-01).
99:. Gene silencing phenomena similar to this have also been observed in 725:
Henderson, D S; Banga, S S; Grigliatti, T A; Boyd, J B (1994-03-15).
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Eissenberg J. C., Morris G. D., Reuter G., Hartnett T. (1992).
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of the heterochromatin past the rearrangement breakpoint. The
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In mouse, variegating coat colour has been observed. When an
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spreading model is unable to explain certain phenomena.
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allele gets inactivated due to heterochromatinization.
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in some cells through its abnormal juxtaposition with
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Dorn R., Krauss V., Reuter G., Saumweber H. (1993).
1080:Jenuwein T., Laible G., Dorn R., Reuter G. (1998). 362:Elgin, Sarah C.R.; Reuter, Gunter (August 2013). 307:mutation in the original coat color gene. The 79:gene is expressed in every cell of the adult 8: 1250:: CS1 maint: multiple names: authors list ( 1193:: CS1 maint: multiple names: authors list ( 1136:: CS1 maint: multiple names: authors list ( 1071:: CS1 maint: multiple names: authors list ( 1014:: CS1 maint: multiple names: authors list ( 957:: CS1 maint: multiple names: authors list ( 890:: CS1 maint: multiple names: authors list ( 833:: CS1 maint: multiple names: authors list ( 368:Cold Spring Harbor Perspectives in Biology 278:mutations in general. Only for homozygous 1227: 1170: 1105: 1048: 991: 934: 924: 867: 810: 758: 620: 528: 510: 500: 457: 395: 97:heterochromatin-induced gene inactivation 39:. It is also associated with changes in 343: 1243: 1186: 1129: 1064: 1007: 950: 883: 826: 7: 598: 596: 594: 592: 590: 588: 586: 419: 417: 415: 357: 355: 353: 351: 349: 347: 319:In plants, PEV has been observed in 208:-interactions are crucial for PEV. 1220:10.1002/j.1460-2075.1994.tb06693.x 743:10.1002/j.1460-2075.1994.tb06399.x 603:Wakimoto, Barbara T (1998-05-01). 14: 171:models are popular. One is the 779:Additional selected references 563:(3). Springer India: 299–334. 250:mutants that were taken were: 167:Among a number of models, two 1: 645:Molecular biology of the cell 622:10.1016/S0092-8674(00)81159-9 51:The classical example is the 27:caused by the silencing of a 696:10.1016/0092-8674(84)90422-7 488:Epigenetics & Chromatin 442:10.1093/genetics/151.4.1503 380:10.1101/cshperspect.a017780 83:eye resulting in a red-eye 17:Position-effect variegation 1297: 1041:10.1093/genetics/131.2.345 860:10.1093/genetics/155.1.141 55:w (speak white-mottled-4) 926:10.1073/pnas.90.23.11376 905:Proc Natl Acad Sci U S A 126:because the change in 1163:10.1093/emboj/21.5.1121 803:10.1093/emboj/18.7.1923 232:Drosophila melanogaster 149:Drosophila melanogaster 41:chromatin conformation 1098:10.1007/s000180050127 512:10.1186/1756-8935-2-1 35:via rearrangement or 138:. The effect is the 917:1993PNAS...9011376D 557:Journal of Genetics 333:Friedreich's ataxia 215:-interactions  204:This suggests that 984:10.1101/gad.323004 569:10.1007/BF02984195 321:Oenothera blandina 286:In other organisms 95:in 1930. PEV is a 1086:Cell Mol Life Sci 669:"position-effect" 654:978-0-8153-4432-2 553:Hermann J. Muller 237:The mutations in 185:come in when the 1288: 1255: 1249: 1241: 1231: 1198: 1192: 1184: 1174: 1141: 1135: 1127: 1109: 1076: 1070: 1062: 1052: 1019: 1013: 1005: 995: 962: 956: 948: 938: 928: 911:(23): 11376–80. 895: 889: 881: 871: 838: 832: 824: 814: 773: 772: 762: 737:(6): 1450–1459. 731:The EMBO Journal 722: 716: 715: 679: 673: 672: 665: 659: 658: 641: 635: 634: 624: 600: 581: 580: 549: 543: 542: 532: 514: 504: 478: 472: 471: 461: 436:(4): 1503–1516. 421: 410: 409: 399: 359: 1296: 1295: 1291: 1290: 1289: 1287: 1286: 1285: 1271: 1270: 1262: 1242: 1214:(16): 3822–31. 1201: 1185: 1144: 1128: 1079: 1063: 1022: 1006: 978:(23): 2973–83. 965: 949: 898: 882: 841: 825: 784: 781: 776: 724: 723: 719: 681: 680: 676: 667: 666: 662: 655: 643: 642: 638: 602: 601: 584: 551: 550: 546: 502:10.1.1.332.4382 480: 479: 475: 423: 422: 413: 361: 360: 345: 341: 329: 317: 293: 288: 235: 230:Suppression in 217: 198: 165: 124:position effect 120: 49: 33:heterochromatin 12: 11: 5: 1294: 1292: 1284: 1283: 1273: 1272: 1269: 1268: 1261: 1260:External links 1258: 1257: 1256: 1199: 1157:(5): 1121–31. 1142: 1077: 1035:(2): 345–352. 1020: 963: 896: 839: 797:(7): 1923–38. 780: 777: 775: 774: 717: 690:(3): 869–878. 674: 660: 653: 636: 615:(3): 321–324. 582: 544: 473: 411: 374:(8): a017780. 342: 340: 337: 336: 335: 328: 325: 316: 313: 292: 289: 287: 284: 234: 228: 216: 210: 197: 191: 164: 161: 119: 116: 93:Hermann Muller 48: 45: 13: 10: 9: 6: 4: 3: 2: 1293: 1282: 1279: 1278: 1276: 1267: 1264: 1263: 1259: 1253: 1247: 1239: 1235: 1230: 1225: 1221: 1217: 1213: 1209: 1205: 1200: 1196: 1190: 1182: 1178: 1173: 1168: 1164: 1160: 1156: 1152: 1148: 1143: 1139: 1133: 1125: 1121: 1117: 1113: 1108: 1103: 1099: 1095: 1091: 1087: 1083: 1078: 1074: 1068: 1060: 1056: 1051: 1046: 1042: 1038: 1034: 1030: 1026: 1021: 1017: 1011: 1003: 999: 994: 989: 985: 981: 977: 973: 969: 964: 960: 954: 946: 942: 937: 932: 927: 922: 918: 914: 910: 906: 902: 897: 893: 887: 879: 875: 870: 865: 861: 857: 854:(1): 141–57. 853: 849: 845: 840: 836: 830: 822: 818: 813: 808: 804: 800: 796: 792: 788: 783: 782: 778: 770: 766: 761: 756: 752: 748: 744: 740: 736: 732: 728: 721: 718: 713: 709: 705: 701: 697: 693: 689: 685: 678: 675: 670: 664: 661: 656: 650: 646: 640: 637: 632: 628: 623: 618: 614: 610: 606: 599: 597: 595: 593: 591: 589: 587: 583: 578: 574: 570: 566: 562: 558: 554: 548: 545: 540: 536: 531: 526: 522: 518: 513: 508: 503: 498: 494: 490: 489: 484: 477: 474: 469: 465: 460: 455: 451: 447: 443: 439: 435: 431: 427: 420: 418: 416: 412: 407: 403: 398: 393: 389: 385: 381: 377: 373: 369: 365: 358: 356: 354: 352: 350: 348: 344: 338: 334: 331: 330: 326: 324: 322: 314: 312: 310: 306: 302: 298: 290: 285: 283: 281: 277: 273: 269: 265: 261: 257: 253: 249: 245: 240: 233: 229: 227: 224: 222: 221:reporter gene 214: 211: 209: 207: 202: 195: 192: 190: 188: 184: 183:-interactions 182: 177: 175: 170: 162: 160: 158: 153: 152: 150: 146: 141: 137: 133: 129: 125: 117: 115: 112: 111: 109: 104: 103: 102:S. cerevisiae 98: 94: 90: 86: 82: 78: 74: 70: 66: 62: 58: 57:translocation 54: 46: 44: 42: 38: 37:transposition 34: 30: 26: 22: 18: 1246:cite journal 1211: 1207: 1189:cite journal 1154: 1150: 1132:cite journal 1092:(1): 80–93. 1089: 1085: 1067:cite journal 1032: 1028: 1010:cite journal 975: 971: 953:cite journal 908: 904: 886:cite journal 851: 847: 829:cite journal 794: 790: 734: 730: 720: 687: 683: 677: 663: 644: 639: 612: 608: 560: 556: 547: 492: 486: 476: 433: 429: 371: 367: 320: 318: 294: 279: 275: 271: 267: 263: 259: 255: 251: 247: 243: 238: 236: 231: 225: 218: 212: 205: 203: 199: 193: 186: 180: 179: 173: 172: 166: 156: 154: 147: 139: 131: 127: 121: 113: 106: 100: 96: 88: 80: 76: 72: 69:X chromosome 52: 50: 20: 16: 15: 140:variegation 71:placed the 25:variegation 339:References 305:homozygous 196:-spreading 176:-spreading 169:epigenetic 163:Mechanisms 157:Drosophila 136:expression 81:Drosophila 59:. In this 53:Drosophila 972:Genes Dev 751:0261-4189 521:1756-8935 497:CiteSeerX 450:0016-6731 388:1943-0264 315:In plants 309:wild-type 297:autosomal 122:PEV is a 118:Etymology 105:and  85:phenotype 65:inversion 1281:Genetics 1275:Category 1181:11867540 1107:11147257 1029:Genetics 1002:15574598 878:10790390 848:Genetics 821:10202156 712:36914243 577:40797289 539:19178722 495:(1): 1. 468:10101173 430:Genetics 406:23906716 327:See also 291:In mouse 128:position 108:S. pombe 61:mutation 47:Overview 1266:Flybase 1238:7915232 1124:7769686 1116:9487389 1059:1644277 1050:1205009 945:8248257 913:Bibcode 869:1461079 812:1171278 769:7907981 704:6086148 631:9590165 530:2644302 459:1460573 397:3721279 145:mutated 134:on its 67:on the 23:) is a 1236:  1229:395295 1226:  1208:EMBO J 1179:  1172:125909 1169:  1151:EMBO J 1122:  1114:  1104:  1057:  1047:  1000:  993:534657 990:  943:  933:  876:  866:  819:  809:  791:EMBO J 767:  760:394963 757:  749:  710:  702:  651:  629:  575:  537:  527:  519:  499:  466:  456:  448:  404:  394:  386:  301:allele 132:effect 1120:S2CID 936:47985 708:S2CID 573:S2CID 270:210, 266:209, 262:208, 258:205, 254:201, 213:trans 206:trans 181:trans 89:white 77:white 73:white 63:, an 1252:link 1234:PMID 1195:link 1177:PMID 1138:link 1112:PMID 1073:link 1055:PMID 1016:link 998:PMID 959:link 941:PMID 892:link 874:PMID 835:link 817:PMID 765:PMID 747:ISSN 700:PMID 684:Cell 649:ISBN 627:PMID 609:Cell 535:PMID 517:ISSN 464:PMID 446:ISSN 402:PMID 384:ISSN 187:cis- 29:gene 1224:PMC 1216:doi 1167:PMC 1159:doi 1102:PMC 1094:doi 1045:PMC 1037:doi 1033:131 988:PMC 980:doi 931:PMC 921:doi 864:PMC 856:doi 852:155 807:PMC 799:doi 755:PMC 739:doi 692:doi 617:doi 565:doi 525:PMC 507:doi 454:PMC 438:doi 434:151 392:PMC 376:doi 280:mus 276:mus 272:mus 268:mus 264:mus 260:mus 256:mus 252:mus 248:mus 244:mus 239:mus 194:cis 174:cis 21:PEV 1277:: 1248:}} 1244:{{ 1232:. 1222:. 1212:13 1210:. 1206:. 1191:}} 1187:{{ 1175:. 1165:. 1155:21 1153:. 1149:. 1134:}} 1130:{{ 1118:. 1110:. 1100:. 1090:54 1088:. 1084:. 1069:}} 1065:{{ 1053:. 1043:. 1031:. 1027:. 1012:}} 1008:{{ 996:. 986:. 976:18 974:. 970:. 955:}} 951:{{ 939:. 929:. 919:. 909:90 907:. 903:. 888:}} 884:{{ 872:. 862:. 850:. 846:. 831:}} 827:{{ 815:. 805:. 795:18 793:. 789:. 763:. 753:. 745:. 735:13 733:. 729:. 706:. 698:. 688:37 686:. 625:. 613:93 611:. 607:. 585:^ 571:. 561:22 559:. 533:. 523:. 515:. 505:. 491:. 485:. 462:. 452:. 444:. 432:. 428:. 414:^ 400:. 390:. 382:. 370:. 366:. 346:^ 43:. 1254:) 1240:. 1218:: 1197:) 1183:. 1161:: 1140:) 1126:. 1096:: 1075:) 1061:. 1039:: 1018:) 1004:. 982:: 961:) 947:. 923:: 915:: 894:) 880:. 858:: 837:) 823:. 801:: 771:. 741:: 714:. 694:: 671:. 657:. 633:. 619:: 579:. 567:: 541:. 509:: 493:2 470:. 440:: 408:. 378:: 372:5 151:. 110:. 19:(

Index

variegation
gene
heterochromatin
transposition
chromatin conformation
translocation
mutation
inversion
X chromosome
phenotype
Hermann Muller
S. cerevisiae
S. pombe
position effect
expression
mutated
Drosophila melanogaster
epigenetic
reporter gene
autosomal
allele
homozygous
wild-type
Friedreich's ataxia





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