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Serine protease

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102. These three key amino acids each play an essential role in the cleaving ability of the proteases. While the amino acid members of the triad are located far from one another on the sequence of the protein, due to folding, they will be very close to one another in the heart of the enzyme. The
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Due to their catalytic activity, some serine proteases possess potent antimicrobial properties. Several in vitro studies have demonstrated the efficacy of some proteases in reducing virulence by cleaving viral surface proteins. Viral entry into host cells is mediated by the interaction of these
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Zymogens are large, inactive structures, which have the ability to break apart or change into the smaller activated enzymes. The difference between zymogens and the activated enzymes lies in the fact that the active site for catalysis of the zymogens is distorted. As a result, the substrate
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binds (in this case, the polypeptide being cleaved), a product is released (the C-terminus "half" of the peptide with amino group visible), another substrate binds (in this case, water), and another product is released (the N-terminus "half" of the peptide with carboxyl group visible).
777:. They have been found to have roles in coagulation and digestion as well as in the pathophysiology of neurodegenerative disorders such as Alzheimer's and Parkinson's induced dementia. Many highly-toxic thrombin-like serine protease isoforms are found in snake venoms. 1237:
that resemble the tetrahedral intermediate, and thus fill up the active site, preventing the enzyme from working properly. Trypsin, a powerful digestive enzyme, is generated in the pancreas. Inhibitors prevent self-digestion of the pancreas itself.
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surface proteins with the host cell. When these proteins are fragmented or inactivated on the viral surface, the viral entry is impaired, leading to a reduction in infectivity of a broad spectrum of pathologically relevant microorganisms like
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secretions from the duodenal mucosa cleave the lysine 15 - isoleucine 16 peptide bond of the zymogen. As a result, the zymogen trypsinogen breaks down into trypsin. Recall that trypsin is also responsible for cleaving
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particular geometry of the triad members are highly characteristic to their specific function: it was shown that the position of just four points of the triad characterize the function of the containing enzyme.
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Lopes BR, da Silva GS, de Lima Menezes G, de Oliveira J, Watanabe AS, Porto BN, et al. (May 2022). "Serine proteases in neutrophil extracellular traps exhibit anti-Respiratory Syncytial Virus activity".
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carbon. Once again, the electrons from the double bond move to the oxygen making it negative, as the bond between the oxygen of the water and the carbon is formed. This is coordinated by the nitrogen of the
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peptide bonds, and thus, once a small amount of trypsin is generated, it participates in cleavage of its own zymogen, generating even more trypsin. The process of trypsin activation can thus be called
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Breugelmans B, Simonet G, van Hoef V, Van Soest S, Vanden Broeck J (March 2009). "Pacifastin-related peptides: structural and functional characteristics of a family of serine peptidase inhibitors".
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substrate binds to the surface of the serine protease enzyme such that the scissile bond is inserted into the active site of the enzyme, with the carbonyl carbon of this bond positioned near the
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The main player in the catalytic mechanism in the serine proteases is the catalytic triad. The triad is located in the active site of the enzyme, where catalysis occurs, and is preserved in all
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Host organisms must ensure that the activity of serine proteases is adequately regulated. This is achieved by a requirement for initial protease activation, and the secretion of inhibitors.
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Mutations may lead to decreased or increased activity of enzymes. This may have different consequences, depending on the normal function of the serine protease. For example, mutations in
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are the usually inactive precursors of an enzyme. If the digestive enzymes were active when synthesized, they would immediately start chewing up the synthesizing organs and tissues.
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The S1 pocket of chymotrypsin-like enzymes is more hydrophobic than in trypsin-like proteases. This results in a specificity for medium to large sized hydrophobic residues, such as
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is such a condition, in which there is premature activation of the digestive enzymes in the pancreas, resulting in self-digestion (autolysis). It also complicates
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Hinge prediction are colored in blue (residues 23:28) and red (residues 175:182). The green colored region is the active site. Motion is generated using hdANM.
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fusion). Exogenous snake venom serine proteases cause a vast array of coagulopathies when injected in a host due to the lack of regulation of their activity.
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The bond joining the nitrogen and the carbon in the peptide bond is now broken. The covalent electrons creating this bond move to attack the hydrogen of the
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In the event of catalysis, an ordered mechanism occurs in which several intermediates are generated. The catalysis of the peptide cleavage can be seen as a
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Serine proteases are characterised by a distinctive structure, consisting of two beta-barrel domains that converge at the catalytic active site. These
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does not occur. Only after activation, during which the conformation and structure of the zymogen change and the active site is opened, can
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Madala PK, Tyndall JD, Nall T, Fairlie DP (June 2010). "Update 1 of: Proteases universally recognize beta strands in their active sites".
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Elastase-like proteases have a much smaller S1 cleft than either trypsin- or chymotrypsin-like proteases. Consequently, residues such as
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Ovaere P, Lippens S, Vandenabeele P, Declercq W (September 2009). "The emerging roles of serine protease cascades in the epidermis".
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After the Arg 15 - Ile 16 bond in the chymotrypsinogen zymogen is cleaved by trypsin, the newly generated structure called a
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can be further categorised based on their substrate specificity as either trypsin-like, chymotrypsin-like or elastase-like.
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Iván G, Szabadka Z, Ordög R, Grolmusz V, Náray-Szabó G (June 2009). "Four spatial points that define enzyme families".
812:. Subtilisin is evolutionarily unrelated to the chymotrypsin-clan, but shares the same catalytic mechanism utilising a 1224:
The zymogens are stored in zymogen granules, capsules that have walls that are thought to be resistant to proteolysis.
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oxygen double bond move back from the negative oxygen to recreate the bond, generating an acyl-enzyme intermediate.
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of the reaction. This "preferential binding" is responsible for much of the catalytic efficiency of the enzyme.
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Crystal structure of bovine chymotrypsin. The catalytic residues are shown as yellow sticks. Rendered from PDB
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double bond, fits perfectly into the oxyanion hole. In effect, serine proteases preferentially bind the
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of step 1 and step 3 are generated, the negative oxygen ion, having accepted the electrons from the
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Sakai K, Ami Y, Tahara M, Kubota T, Anraku M, Abe M, et al. (May 2014). Dermody TS (ed.).
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accepts the hydrogen from the -OH of the and a pair of electrons from the double bond of the
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Determination of serine protease levels may be useful in the context of particular diseases.
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Khade PM, Scaramozzino D, Kumar A, Lacidogna G, Carpinteri A, Jernigan RL (November 2021).
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Trypsin-like proteases cleave peptide bonds following a positively charged amino acid (
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Oliveira AL, Viegas MF, da Silva SL, Soares AM, Ramos MJ, Fernandes PA (2022-06-10).
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is essential, because it activates its own reaction, as well as the reaction of both
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of serine protease enzymes. The triad is a coordinated structure consisting of three
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class families, S: purely serine proteases. superfamily. Within each superfamily,
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oxygen moves to the oxygen. As a result, a tetrahedral intermediate is generated.
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levels may be required in the diagnosis of hemorrhagic or thrombotic conditions.
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Proceedings of the National Academy of Sciences of the United States of America
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Hedstrom L (December 2002). "Serine protease mechanism and specificity".
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is employed to determine the exocrine activity of the pancreas, e.g., in
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bond with the serine protease, inhibiting its function. The best-studied
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Each amino acid in the triad performs a specific task in this process:
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are designated by their catalytic nucleophile, (S: serine proteases).
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Hinge motion in disordered activation domain in Trypsinogen (PDB ID:
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Phage K1F endosialidase CIMCD self-cleaving protein (Enterobacteria
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In a final reaction, the bond formed in the first step between the
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carbon re-forms the double bond with the oxygen. As a result, the
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It was discovered that additional amino acids of the protease,
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can donate backbone hydrogens for hydrogen bonding. When the
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The activation of trypsinogen by trypsin is relatively slow
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Now, water comes into the reaction. Water replaces the
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online database for peptidases and their inhibitors:
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Serine proteases are inhibited by a diverse group of
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Biochemical and Biophysical Research Communications
1074:and the overall structure is favored, lowering the 199: 187: 175: 170: 147: 135: 123: 111: 99: 87: 75: 70: 58: 53: 32: 1769:Evnin LB, Vásquez JR, Craik CS (September 1990). 1241:Serine proteases are paired with serine protease 946:The whole reaction can be summarized as follows: 820:. This is the classic example used to illustrate 1184:(self digestion), yielding active chymotrypsin. 1628:Khade PM, Kumar A, Jernigan RL (January 2020). 915:-OH group, thus coordinating the attack of the 318:. The majority belong to the S1 family of the 3051: 2586: 2142: 1199:It is activated by cleavage through trypsin. 1047:, are involved in creating what is called an 1018:carbon moves to attack the hydrogen that the 8: 1934:"Kimball's Biology Pages, Serine Proteases" 860:195 (hence the name "serine protease") and 3058: 3044: 3036: 2593: 2579: 2571: 2183: 2149: 2135: 2127: 1524:- Database of protease evolutionary groups 1205:As can be seen, trypsinogen activation to 1022:just acquired. The now electron-deficient 888:has an -OH group that is able to act as a 329:, P: superfamily, containing a mixture of 167: 38: 2119:at the U.S. National Library of Medicine 2062: 1901: 1864: 1812: 1794: 1710: 1653: 1109:polypeptide cannot bind effectively, and 580:Murein tetrapeptidase LD-carboxypeptidase 294:protease classification system counts 16 1394:, is an important diagnostic marker for 1119: 998:of the cleaved peptide, and attacks the 355: 3333: 1550: 907:nitrogen has the ability to accept the 266:. They are found ubiquitously in both 2606:serine proteases/serine endopeptidases 1082:Regulation of serine protease activity 29: 7: 1834: 1832: 1315:, and may function in the arthropod 1303:serine peptidase inhibitors, called 773:, tissue activating plasminogen and 618:S1, S3, S6, S7, S29, S30, S31, S32, 2519:Amyloid precursor protein secretase 840:serine protease reaction mechanism 298:(as of 2013) each containing many 25: 1506:Protease inhibitor (pharmacology) 700:S48, S62, S68, S71, S72, S79, S81 3336: 2504:Proteasome endopeptidase complex 2004:International Immunopharmacology 1390:Serine protease, as released by 972:carbon, and the nitrogen of the 1972:10.1016/j.peptides.2008.07.026 1736:Trends in Biochemical Sciences 1035:Additional stabilizing effects 1030:of the peptide is now ejected. 900:peptide bond of the substrate. 348:). The hinges predicted using 1: 2818:Urinary plasminogen activator 2368:Serine type carboxypeptidases 2350:Angiotensin-converting enzyme 357:Families of serine proteases 2813:Tissue plasminogen activator 2016:10.1016/j.intimp.2022.108573 1634:Journal of Molecular Biology 1511:Protease inhibitor (biology) 1272:, studied for their role in 1144:When trypsinogen enters the 620:S39, S46, S55, S64, S65, S75 322:(superfamily) of proteases. 302:. Each superfamily uses the 228:, a typical serine protease. 903:A pair of electrons on the 816:, to create a nucleophilic 402:S9, S10, S15, S28, S33, S37 3380: 1912:10.1016/j.bbrc.2009.04.022 1857:10.1038/s41570-022-00393-7 1748:10.1016/j.tibs.2009.08.001 1254:serine protease inhibitors 3214:Michaelis–Menten kinetics 2904:Proteinase 3/Myeloblastin 1845:Nature Reviews. Chemistry 1703:10.1016/j.bpj.2021.10.017 1646:10.1016/j.jmb.2019.11.018 1496:Proteases in angiogenesis 1385:prostate cancer screening 1381:prostate-specific antigen 1307:, has been identified in 1103:postmortem investigations 166: 37: 3106:Diffusion-limited enzyme 2330:Tripeptidyl peptidase II 2121:Medical Subject Headings 1064:tetrahedral intermediate 808:is a serine protease in 278:-like (trypsin-like) or 2499:Threonine endopeptidase 2325:Tripeptidyl peptidase I 1796:10.1073/pnas.87.17.6659 1501:Intramembrane proteases 1396:type 1 hypersensitivity 605:Drosophila melanogaster 462:S21, S73, S77, S78, S80 426:D-Ala-D-Ala peptidase C 306:or dyad in a different 2958:Proprotein convertases 2489:Aspartic acid protease 2313:Dipeptidyl peptidase-4 2111:Saint Louis University 872:catalysis, in which a 841: 797:tend to be preferred. 585:Pseudomonas aeruginosa 391:Bacillus licheniformis 353: 229: 3199:Eadie–Hofstee diagram 3132:Allosteric regulation 2808:Plasminogen activator 2320:Tripeptidyl peptidase 839: 709:Substrate specificity 406:Prolyl oligopeptidase 343: 237:serine endopeptidases 220: 3209:Lineweaver–Burk plot 2948:Prolyl endopeptidase 2494:Metalloendopeptidase 2399:Metalloexopeptidases 2303:Dipeptidyl peptidase 2055:10.1128/JVI.03677-13 1476:Convergent evolution 1415:Antimicrobial effect 1374:chronic pancreatitis 1335:and predisposing to 1333:protein C deficiency 822:convergent evolution 644:Penicillin G acylase 312:convergent evolution 2509:HslU—HslV peptidase 2453:Metalloexopeptidase 2043:Journal of Virology 1787:1990PNAS...87.6659E 1695:2021BpJ...120.4955K 1683:Biophysical Journal 1491:The Proteolysis Map 1402:. More useful than 1270:alpha 1-antitrypsin 1148:from the pancreas, 832:Catalytic mechanism 684:DmpA aminopeptidase 358: 316:catalytic mechanism 3168:Enzyme superfamily 3101:Enzyme promiscuity 2100:2017-04-04 at the 1406:due to the longer 1360:Coagulation factor 1233:There are certain 1099:Acute pancreatitis 1090:Zymogen activation 842: 356: 354: 262:at the (enzyme's) 230: 3324: 3323: 3033: 3032: 2830:Complement system 2622:Digestive enzymes 2568: 2567: 2517:Other/ungrouped: 2484:Cysteine protease 2461: 2460: 2379: 2049:(10): 5608–5616. 1781:(17): 6659–6663. 1689:(22): 4955–4965. 1607:10.1021/cr900368a 1572:10.1021/cr000033x 1566:(12): 4501–4524. 1203: 1202: 1076:activation energy 745:Chymotrypsin-like 706: 705: 689:Brucella anthropi 310:and so represent 222:Crystal structure 215: 214: 211: 210: 130:metabolic pathway 16:(Redirected from 3371: 3341: 3340: 3332: 3204:Hanes–Woolf plot 3147:Enzyme activator 3142:Enzyme inhibitor 3116:Enzyme catalysis 3060: 3053: 3046: 3037: 2595: 2588: 2581: 2572: 2534:Beta-secretase 2 2529:Beta-secretase 1 2405:Carboxypeptidase 2401: 2377: 2184: 2151: 2144: 2137: 2128: 2117:Serine+proteases 2107:Serine Proteases 2095:Serine Peptidase 2077: 2076: 2066: 2034: 2028: 2027: 1998: 1992: 1991: 1955: 1949: 1948: 1946: 1945: 1936:. Archived from 1930: 1924: 1923: 1905: 1885: 1879: 1878: 1868: 1836: 1827: 1826: 1816: 1798: 1766: 1760: 1759: 1731: 1725: 1724: 1714: 1674: 1668: 1667: 1657: 1625: 1619: 1618: 1595:Chemical Reviews 1590: 1584: 1583: 1560:Chemical Reviews 1555: 1439:Serine hydrolase 1398:reactions e.g., 1167:Chymotrypsinogen 1120: 1072:transition state 968:-OH attacks the 892:, attacking the 669:Escherichia coli 649:Escherichia coli 510:Escherichia coli 490:Escherichia coli 465:Cytomegalovirus 451:Escherichia coli 446:Signal peptidase 431:Escherichia coli 359: 233:Serine proteases 168: 42: 30: 27:Class of enzymes 21: 18:Serine proteases 3379: 3378: 3374: 3373: 3372: 3370: 3369: 3368: 3349: 3348: 3347: 3335: 3327: 3325: 3320: 3232:Oxidoreductases 3218: 3194:Enzyme kinetics 3182: 3178:List of enzymes 3151: 3120: 3091:Catalytic triad 3069: 3064: 3034: 3029: 2931: 2908: 2874: 2824: 2661: 2630:Enteropeptidase 2616: 2599: 2569: 2564: 2545: 2539:Gamma secretase 2524:Alpha secretase 2479:Serine protease 2457: 2446:Other/ungrouped 2441: 2397: 2384: 2380:-Transpeptidase 2354: 2336: 2289: 2254: 2169: 2155: 2102:Wayback Machine 2086: 2081: 2080: 2036: 2035: 2031: 2000: 1999: 1995: 1957: 1956: 1952: 1943: 1941: 1932: 1931: 1927: 1903:10.1.1.150.1086 1887: 1886: 1882: 1838: 1837: 1830: 1768: 1767: 1763: 1733: 1732: 1728: 1676: 1675: 1671: 1627: 1626: 1622: 1592: 1591: 1587: 1557: 1556: 1552: 1547: 1542: 1486:Catalytic triad 1434: 1417: 1370:cystic fibrosis 1353: 1325: 1323:Role in disease 1231: 1178:pi-chymotrypsin 1150:enteropeptidase 1146:small intestine 1092: 1084: 1037: 940:electronegative 834: 814:catalytic triad 803: 801:Subtilisin-like 783: 767: 747: 723: 711: 619: 485:Lon-A peptidase 364: 304:catalytic triad 288: 49: 33:Serine protease 28: 23: 22: 15: 12: 11: 5: 3377: 3375: 3367: 3366: 3361: 3351: 3350: 3346: 3345: 3322: 3321: 3319: 3318: 3305: 3292: 3279: 3266: 3253: 3240: 3226: 3224: 3220: 3219: 3217: 3216: 3211: 3206: 3201: 3196: 3190: 3188: 3184: 3183: 3181: 3180: 3175: 3170: 3165: 3159: 3157: 3156:Classification 3153: 3152: 3150: 3149: 3144: 3139: 3134: 3128: 3126: 3122: 3121: 3119: 3118: 3113: 3108: 3103: 3098: 3093: 3088: 3083: 3077: 3075: 3071: 3070: 3065: 3063: 3062: 3055: 3048: 3040: 3031: 3030: 3028: 3027: 3026: 3025: 3020: 3010: 3005: 2996: 2982: 2977: 2972: 2971: 2970: 2965: 2955: 2950: 2945: 2939: 2937: 2933: 2932: 2930: 2929: 2924: 2918: 2916: 2910: 2909: 2907: 2906: 2901: 2896: 2891: 2885: 2883: 2876: 2875: 2873: 2872: 2867: 2866: 2865: 2860: 2850: 2845: 2840: 2834: 2832: 2826: 2825: 2823: 2822: 2821: 2820: 2815: 2805: 2793: 2792: 2791: 2790: 2785: 2780: 2775: 2770: 2765: 2760: 2755: 2750: 2745: 2740: 2735: 2730: 2725: 2720: 2715: 2705: 2700: 2695: 2690: 2685: 2680: 2671: 2669: 2663: 2662: 2660: 2659: 2658: 2657: 2652: 2642: 2637: 2632: 2626: 2624: 2618: 2617: 2602:Endopeptidases 2600: 2598: 2597: 2590: 2583: 2575: 2566: 2565: 2563: 2562: 2560:Staphylokinase 2556: 2554: 2547: 2546: 2544: 2543: 2542: 2541: 2536: 2531: 2526: 2514: 2513: 2512: 2511: 2506: 2496: 2491: 2486: 2481: 2475: 2473: 2463: 2462: 2459: 2458: 2456: 2455: 2449: 2447: 2443: 2442: 2440: 2439: 2438: 2437: 2432: 2427: 2422: 2417: 2412: 2402: 2394: 2392: 2386: 2385: 2383: 2382: 2374: 2364: 2362: 2356: 2355: 2353: 2352: 2346: 2344: 2338: 2337: 2335: 2334: 2333: 2332: 2327: 2317: 2316: 2315: 2310: 2299: 2297: 2291: 2290: 2288: 2287: 2286: 2285: 2280: 2275: 2264: 2262: 2256: 2255: 2253: 2252: 2251: 2250: 2245: 2244: 2243: 2238: 2228: 2223: 2218: 2213: 2208: 2203: 2196:Aminopeptidase 2192: 2190: 2181: 2171: 2170: 2156: 2154: 2153: 2146: 2139: 2131: 2125: 2124: 2114: 2104: 2085: 2084:External links 2082: 2079: 2078: 2029: 1993: 1966:(3): 622–632. 1950: 1925: 1896:(4): 417–420. 1880: 1851:(7): 451–469. 1828: 1761: 1742:(9): 453–463. 1726: 1669: 1640:(2): 508–522. 1620: 1601:(6): PR1–P31. 1585: 1549: 1548: 1546: 1543: 1541: 1540: 1535: 1530: 1525: 1519: 1513: 1508: 1503: 1498: 1493: 1488: 1483: 1478: 1473: 1468: 1467: 1466: 1461: 1456: 1451: 1441: 1435: 1433: 1430: 1416: 1413: 1412: 1411: 1388: 1377: 1366:Fecal elastase 1363: 1352: 1351:Diagnostic use 1349: 1324: 1321: 1230: 1227: 1226: 1225: 1222: 1201: 1200: 1197: 1192: 1186: 1185: 1174: 1169: 1163: 1162: 1142: 1137: 1131: 1130: 1127: 1124: 1091: 1088: 1083: 1080: 1036: 1033: 1032: 1031: 1008: 992: 981: 962: 944: 943: 932:hydrogen bonds 920: 901: 896:carbon of the 833: 830: 802: 799: 782: 779: 769:These include 766: 763: 746: 743: 722: 719: 710: 707: 704: 703: 701: 698: 694: 693: 681: 678: 674: 673: 661: 658: 654: 653: 641: 638: 634: 633: 621: 616: 610: 609: 597: 594: 590: 589: 577: 574: 570: 569: 557: 554: 550: 549: 537: 534: 530: 529: 522: 519: 515: 514: 502: 499: 495: 494: 482: 479: 475: 474: 463: 460: 456: 455: 443: 440: 436: 435: 423: 420: 416: 415: 403: 400: 396: 395: 383: 380: 376: 375: 372: 367: 287: 286:Classification 284: 255:serves as the 213: 212: 209: 208: 203: 197: 196: 191: 185: 184: 179: 173: 172: 164: 163: 152: 145: 144: 139: 133: 132: 127: 121: 120: 115: 109: 108: 103: 97: 96: 91: 85: 84: 79: 73: 72: 68: 67: 62: 56: 55: 51: 50: 43: 35: 34: 26: 24: 14: 13: 10: 9: 6: 4: 3: 2: 3376: 3365: 3362: 3360: 3357: 3356: 3354: 3344: 3339: 3334: 3330: 3316: 3312: 3311: 3306: 3303: 3299: 3298: 3293: 3290: 3286: 3285: 3280: 3277: 3273: 3272: 3267: 3264: 3260: 3259: 3254: 3251: 3247: 3246: 3241: 3238: 3234: 3233: 3228: 3227: 3225: 3221: 3215: 3212: 3210: 3207: 3205: 3202: 3200: 3197: 3195: 3192: 3191: 3189: 3185: 3179: 3176: 3174: 3173:Enzyme family 3171: 3169: 3166: 3164: 3161: 3160: 3158: 3154: 3148: 3145: 3143: 3140: 3138: 3137:Cooperativity 3135: 3133: 3130: 3129: 3127: 3123: 3117: 3114: 3112: 3109: 3107: 3104: 3102: 3099: 3097: 3096:Oxyanion hole 3094: 3092: 3089: 3087: 3084: 3082: 3079: 3078: 3076: 3072: 3068: 3061: 3056: 3054: 3049: 3047: 3042: 3041: 3038: 3024: 3021: 3019: 3016: 3015: 3014: 3011: 3009: 3008:Streptokinase 3006: 3004: 3000: 2997: 2994: 2990: 2986: 2983: 2981: 2978: 2976: 2973: 2969: 2966: 2964: 2961: 2960: 2959: 2956: 2954: 2951: 2949: 2946: 2944: 2941: 2940: 2938: 2934: 2928: 2925: 2923: 2920: 2919: 2917: 2915: 2911: 2905: 2902: 2900: 2897: 2895: 2892: 2890: 2887: 2886: 2884: 2882: 2881:immune system 2877: 2871: 2870:C3-convertase 2868: 2864: 2861: 2859: 2856: 2855: 2854: 2851: 2849: 2846: 2844: 2841: 2839: 2836: 2835: 2833: 2831: 2827: 2819: 2816: 2814: 2811: 2810: 2809: 2806: 2804: 2801: 2799: 2795: 2794: 2789: 2786: 2784: 2781: 2779: 2776: 2774: 2771: 2769: 2766: 2764: 2761: 2759: 2756: 2754: 2751: 2749: 2746: 2744: 2741: 2739: 2736: 2734: 2731: 2729: 2726: 2724: 2721: 2719: 2716: 2714: 2711: 2710: 2709: 2706: 2704: 2701: 2699: 2696: 2694: 2691: 2689: 2686: 2684: 2681: 2679: 2676: 2673: 2672: 2670: 2668: 2664: 2656: 2653: 2651: 2648: 2647: 2646: 2643: 2641: 2638: 2636: 2633: 2631: 2628: 2627: 2625: 2623: 2619: 2614: 2611: 2607: 2603: 2596: 2591: 2589: 2584: 2582: 2577: 2576: 2573: 2561: 2558: 2557: 2555: 2552: 2548: 2540: 2537: 2535: 2532: 2530: 2527: 2525: 2522: 2521: 2520: 2516: 2515: 2510: 2507: 2505: 2502: 2501: 2500: 2497: 2495: 2492: 2490: 2487: 2485: 2482: 2480: 2477: 2476: 2474: 2472: 2471:Endopeptidase 2468: 2464: 2454: 2451: 2450: 2448: 2444: 2436: 2433: 2431: 2428: 2426: 2423: 2421: 2418: 2416: 2413: 2411: 2408: 2407: 2406: 2403: 2400: 2396: 2395: 2393: 2391: 2387: 2381: 2375: 2373: 2369: 2366: 2365: 2363: 2361: 2357: 2351: 2348: 2347: 2345: 2343: 2339: 2331: 2328: 2326: 2323: 2322: 2321: 2318: 2314: 2311: 2309: 2306: 2305: 2304: 2301: 2300: 2298: 2296: 2292: 2284: 2281: 2279: 2276: 2274: 2271: 2270: 2269: 2266: 2265: 2263: 2261: 2257: 2249: 2246: 2242: 2239: 2237: 2234: 2233: 2232: 2229: 2227: 2224: 2222: 2219: 2217: 2214: 2212: 2209: 2207: 2204: 2202: 2199: 2198: 2197: 2194: 2193: 2191: 2189: 2185: 2182: 2180: 2176: 2172: 2167: 2163: 2159: 2152: 2147: 2145: 2140: 2138: 2133: 2132: 2129: 2122: 2118: 2115: 2112: 2108: 2105: 2103: 2099: 2096: 2092: 2088: 2087: 2083: 2074: 2070: 2065: 2060: 2056: 2052: 2048: 2044: 2040: 2033: 2030: 2025: 2021: 2017: 2013: 2009: 2005: 1997: 1994: 1989: 1985: 1981: 1977: 1973: 1969: 1965: 1961: 1954: 1951: 1940:on 2005-12-13 1939: 1935: 1929: 1926: 1921: 1917: 1913: 1909: 1904: 1899: 1895: 1891: 1884: 1881: 1876: 1872: 1867: 1862: 1858: 1854: 1850: 1846: 1842: 1835: 1833: 1829: 1824: 1820: 1815: 1810: 1806: 1802: 1797: 1792: 1788: 1784: 1780: 1776: 1772: 1765: 1762: 1757: 1753: 1749: 1745: 1741: 1737: 1730: 1727: 1722: 1718: 1713: 1708: 1704: 1700: 1696: 1692: 1688: 1684: 1680: 1673: 1670: 1665: 1661: 1656: 1651: 1647: 1643: 1639: 1635: 1631: 1624: 1621: 1616: 1612: 1608: 1604: 1600: 1596: 1589: 1586: 1581: 1577: 1573: 1569: 1565: 1561: 1554: 1551: 1544: 1539: 1536: 1534: 1531: 1529: 1526: 1523: 1520: 1517: 1514: 1512: 1509: 1507: 1504: 1502: 1499: 1497: 1494: 1492: 1489: 1487: 1484: 1482: 1479: 1477: 1474: 1472: 1469: 1465: 1462: 1460: 1457: 1455: 1452: 1450: 1447: 1446: 1445: 1442: 1440: 1437: 1436: 1431: 1429: 1427: 1423: 1414: 1409: 1405: 1401: 1397: 1393: 1389: 1386: 1382: 1378: 1375: 1371: 1367: 1364: 1361: 1358: 1357: 1356: 1350: 1348: 1346: 1342: 1338: 1334: 1330: 1322: 1320: 1318: 1317:immune system 1314: 1310: 1306: 1302: 1297: 1295: 1291: 1287: 1283: 1279: 1275: 1271: 1267: 1263: 1259: 1256:) can form a 1255: 1251: 1246: 1244: 1239: 1236: 1228: 1223: 1220: 1219: 1218: 1216: 1212: 1208: 1198: 1196: 1193: 1191: 1188: 1187: 1183: 1179: 1175: 1173: 1170: 1168: 1165: 1164: 1160: 1159:autocatalytic 1156: 1151: 1147: 1143: 1141: 1138: 1136: 1133: 1132: 1128: 1125: 1122: 1121: 1118: 1116: 1112: 1106: 1104: 1100: 1096: 1089: 1087: 1081: 1079: 1077: 1073: 1069: 1065: 1061: 1057: 1053: 1051: 1046: 1042: 1034: 1029: 1025: 1021: 1017: 1013: 1009: 1006: 1001: 997: 993: 990: 986: 982: 979: 975: 971: 967: 963: 960: 957: 953: 949: 948: 947: 941: 937: 933: 929: 928:aspartic acid 926:group on the 925: 921: 918: 914: 910: 906: 902: 899: 895: 891: 887: 883: 882: 881: 878: 875: 871: 866: 863: 859: 855: 851: 847: 846:superfamilies 838: 831: 829: 827: 823: 819: 815: 811: 807: 800: 798: 796: 792: 788: 781:Elastase-like 780: 778: 776: 772: 765:Thrombin-like 764: 762: 760: 756: 755:phenylalanine 752: 744: 742: 740: 739:glutamic acid 736: 735:aspartic acid 732: 728: 720: 718: 716: 708: 702: 699: 696: 695: 691: 690: 685: 682: 679: 676: 675: 671: 670: 665: 664:Dipeptidase E 662: 659: 656: 655: 651: 650: 645: 642: 639: 636: 635: 631: 630: 625: 622: 617: 615: 612: 611: 607: 606: 601: 598: 595: 592: 591: 587: 586: 581: 578: 575: 572: 571: 567: 566: 561: 558: 555: 552: 551: 547: 546: 541: 538: 535: 532: 531: 527: 523: 520: 517: 516: 512: 511: 506: 503: 501:S14, S41, S49 500: 497: 496: 492: 491: 486: 483: 481:S16, S50, S69 480: 477: 476: 472: 468: 464: 461: 458: 457: 453: 452: 447: 444: 441: 438: 437: 433: 432: 427: 424: 422:S11, S12, S13 421: 418: 417: 413: 412: 407: 404: 401: 398: 397: 393: 392: 387: 384: 381: 378: 377: 373: 371: 368: 366: 361: 360: 351: 347: 342: 338: 336: 332: 328: 327:superfamilies 323: 321: 317: 313: 309: 305: 301: 297: 296:superfamilies 293: 285: 283: 281: 277: 273: 269: 265: 261: 258: 254: 250: 246: 245:peptide bonds 242: 238: 234: 227: 223: 219: 207: 204: 202: 198: 195: 192: 190: 186: 183: 180: 178: 174: 169: 165: 162: 159: 156: 153: 150: 146: 143: 140: 138: 134: 131: 128: 126: 122: 119: 116: 114: 110: 107: 106:NiceZyme view 104: 102: 98: 95: 92: 90: 86: 83: 80: 78: 74: 69: 66: 63: 61: 57: 52: 47: 41: 36: 31: 19: 3310:Translocases 3307: 3294: 3281: 3268: 3255: 3245:Transferases 3242: 3229: 3086:Binding site 2798:fibrinolysis 2796: 2674: 2640:Chymotrypsin 2605: 2478: 2435:Glutamate II 2230: 2179:Exopeptidase 2046: 2042: 2032: 2007: 2003: 1996: 1963: 1959: 1953: 1942:. Retrieved 1938:the original 1928: 1893: 1889: 1883: 1848: 1844: 1778: 1774: 1764: 1739: 1735: 1729: 1686: 1682: 1672: 1637: 1633: 1623: 1598: 1594: 1588: 1563: 1559: 1553: 1538:Proteinase K 1428:and others. 1418: 1354: 1331:can lead to 1326: 1299:A family of 1298: 1266:antithrombin 1261: 1247: 1240: 1232: 1214: 1211:chymotrypsin 1210: 1206: 1204: 1189: 1177: 1172:chymotrypsin 1166: 1134: 1107: 1093: 1085: 1059: 1055: 1048: 1044: 1040: 1038: 956:nucleophilic 945: 917:peptide bond 879: 867: 843: 804: 784: 768: 748: 724: 721:Trypsin-like 712: 687: 667: 647: 627: 624:Chymotrypsin 603: 583: 565:Homo sapiens 563: 545:Homo sapiens 543: 508: 505:Clp protease 488: 449: 429: 409: 389: 324: 308:protein fold 289: 276:chymotrypsin 257:nucleophilic 243:that cleave 236: 232: 231: 94:BRENDA entry 3081:Active site 2703:Factor XIIa 2683:Factor VIIa 2667:Coagulation 2372:Cathepsin A 2308:Cathepsin C 2268:Dipeptidase 1481:Proteolysis 1400:anaphylaxis 1383:is used in 1274:coagulation 1190:Proelastase 1135:Trypsinogen 1115:proteolysis 1111:proteolysis 952:polypeptide 890:nucleophile 850:amino acids 810:prokaryotes 646:precursor ( 560:Lactoferrin 540:Nucleoporin 471:herpesvirus 331:nucleophile 272:prokaryotes 264:active site 82:IntEnz view 54:Identifiers 3353:Categories 3284:Isomerases 3258:Hydrolases 3125:Regulation 2985:Subtilisin 2927:Batroxobin 2708:Kallikrein 2698:Factor XIa 2688:Factor IXa 2655:Pancreatic 2650:Neutrophil 2010:: 108573. 1944:2008-06-02 1545:References 1533:Subtilisin 1528:Keratinase 1454:threonine- 1392:mast cells 1345:SARS-CoV-2 1337:thrombosis 1305:pacifastin 1278:thrombosis 1250:inhibitors 1243:inhibitors 1235:inhibitors 1229:Inhibition 1180:undergoes 1028:C-terminus 996:N-terminus 806:Subtilisin 759:tryptophan 629:Bos taurus 411:Sus scrofa 386:Subtilisin 280:subtilisin 268:eukaryotes 260:amino acid 151:structures 118:KEGG entry 3364:Proteases 3359:EC 3.4.21 3163:EC number 3013:Cathepsin 2999:Sedolisin 2975:Prostasin 2693:Factor Xa 2553:: Unknown 2231:Methionyl 2162:proteases 2158:Hydrolase 1898:CiteSeerX 1459:aspartic- 1449:cysteine- 1422:Influenza 1408:half-life 1404:histamine 1343:activate 1329:protein C 1301:arthropod 1282:emphysema 1182:autolysis 1020:histidine 1005:histidine 985:histidine 974:histidine 936:histidine 934:with the 911:from the 905:histidine 874:substrate 870:ping-pong 826:evolution 526:phage K1F 467:assemblin 374:Examples 71:Databases 3187:Kinetics 3111:Cofactor 3074:Activity 2914:Venombin 2899:Tryptase 2894:Granzyme 2848:Factor I 2843:Factor D 2838:Factor B 2678:Thrombin 2675:factors: 2645:Elastase 2226:Glutamyl 2216:Cystinyl 2211:Aspartyl 2109:site at 2098:Archived 2073:24600012 2024:35183035 1980:18775459 1960:Peptides 1920:19364497 1875:35702592 1756:19726197 1721:34687719 1664:31786268 1615:20377171 1580:12475199 1464:metallo- 1444:Protease 1432:See also 1313:crayfish 1258:covalent 1215:elastase 1195:elastase 1123:Zymogen 1095:Zymogens 1068:carbonyl 1050:oxyanion 1024:carbonyl 1016:carbonyl 1014:and the 1000:carbonyl 989:carbonyl 978:carbonyl 970:carbonyl 930:in turn 924:carboxyl 909:hydrogen 898:scissile 894:carbonyl 771:thrombin 751:tyrosine 731:arginine 640:S45, S63 600:Rhomboid 442:S24, S26 370:Families 335:families 300:families 249:proteins 206:proteins 194:articles 182:articles 155:RCSB PDB 65:3.4.21.- 3343:Biology 3297:Ligases 3067:Enzymes 2953:Pronase 2943:Acrosin 2889:Chymase 2803:Plasmin 2635:Trypsin 2206:Arginyl 2201:Alanine 2064:4019123 1988:8797134 1866:9185726 1823:2204062 1805:2355359 1783:Bibcode 1712:8633836 1691:Bibcode 1655:7029793 1516:TopFIND 1471:PA clan 1341:TMPRSS2 1309:locusts 1262:serpins 1207:trypsin 1140:trypsin 1126:Enzyme 1117:occur. 1060:Ser 195 1056:Gly 193 1054:. Both 1045:Ser 195 1041:Gly 193 791:glycine 787:alanine 775:plasmin 715:enzymes 469:(human 382:S8, S53 350:PACKMAN 320:PA clan 314:of the 282:-like. 241:enzymes 226:Trypsin 142:profile 125:MetaCyc 3329:Portal 3271:Lyases 2980:Reelin 2922:Ancrod 2879:Other 2613:3.4.21 2551:3.4.99 2467:3.4.21 2390:3.4.17 2360:3.4.16 2342:3.4.15 2295:3.4.14 2260:3.4.13 2221:Leucyl 2188:3.4.11 2175:3.4.11 2123:(MeSH) 2091:MEROPS 2071:  2061:  2022:  1986:  1978:  1918:  1900:  1873:  1863:  1821:  1811:  1803:  1754:  1719:  1709:  1662:  1652:  1613:  1578:  1522:MEROPS 1379:Serum 1155:lysine 1129:Notes 1012:serine 966:serine 959:serine 913:serine 886:serine 818:serine 795:valine 727:lysine 365:family 363:Super- 292:MEROPS 253:Serine 239:) are 189:PubMed 171:Search 161:PDBsum 101:ExPASy 89:BRENDA 77:IntEnz 60:EC no. 3223:Types 2989:Furin 2936:Other 2863:MASP2 2858:MASP1 2788:KLK15 2783:KLK14 2778:KLK13 2773:KLK12 2768:KLK11 2763:KLK10 2469:-25: 2177:-19: 2113:(SLU) 1984:S2CID 1814:54596 1801:JSTOR 1290:AEBSF 542:145 ( 137:PRIAM 3315:list 3308:EC7 3302:list 3295:EC6 3289:list 3282:EC5 3276:list 3269:EC4 3263:list 3256:EC3 3250:list 3243:EC2 3237:list 3230:EC1 3003:TPP1 2853:MASP 2758:KLK9 2753:KLK8 2748:KLK7 2743:KLK6 2738:KLK5 2733:KLK4 2728:KLK3 2723:KLK2 2718:KLK1 2168:3.4) 2089:The 2069:PMID 2020:PMID 1976:PMID 1916:PMID 1871:PMID 1819:PMID 1752:PMID 1717:PMID 1660:PMID 1611:PMID 1576:PMID 1426:hRSV 1311:and 1294:PMSF 1292:and 1286:A1AT 1280:and 1268:and 1264:are 1213:and 1058:and 1052:hole 1043:and 964:The 950:The 922:The 884:The 856:57, 793:and 757:and 697:None 602:-1 ( 346:2PTN 325:For 290:The 270:and 235:(or 201:NCBI 158:PDBe 113:KEGG 46:1CBW 2993:S1P 2713:PSA 2059:PMC 2051:doi 2012:doi 2008:106 1968:doi 1908:doi 1894:383 1861:PMC 1853:doi 1809:PMC 1791:doi 1744:doi 1707:PMC 1699:doi 1687:120 1650:PMC 1642:doi 1638:432 1603:doi 1599:110 1568:doi 1564:102 1372:or 862:Asp 858:Ser 854:His 741:). 737:or 729:or 660:S51 626:A ( 596:S54 576:S66 556:S60 536:S59 521:S74 473:5) 448:I ( 251:. 247:in 224:of 177:PMC 149:PDB 3355:: 2610:EC 2604:: 2415:A2 2378:DD 2370:: 2166:EC 2160:: 2067:. 2057:. 2047:88 2045:. 2041:. 2018:. 2006:. 1982:. 1974:. 1964:30 1962:. 1914:. 1906:. 1892:. 1869:. 1859:. 1847:. 1843:. 1831:^ 1817:. 1807:. 1799:. 1789:. 1779:87 1777:. 1773:. 1750:. 1740:34 1738:. 1715:. 1705:. 1697:. 1685:. 1681:. 1658:. 1648:. 1636:. 1632:. 1609:. 1597:. 1574:. 1562:. 1424:, 1319:. 1296:. 1161:. 852:: 828:. 789:, 761:. 753:, 692:) 680:P1 677:PE 672:) 657:PC 652:) 637:PB 632:) 614:PA 608:) 593:ST 588:) 573:SS 568:) 553:SR 548:) 533:SP 528:) 518:SO 513:) 498:SK 493:) 478:SJ 459:SH 454:) 439:SF 434:) 419:SE 414:) 399:SC 394:) 379:SB 3331:: 3317:) 3313:( 3304:) 3300:( 3291:) 3287:( 3278:) 3274:( 3265:) 3261:( 3252:) 3248:( 3239:) 3235:( 3059:e 3052:t 3045:v 3023:G 3018:A 3001:/ 2995:4 2991:/ 2987:/ 2968:2 2963:1 2800:: 2615:) 2608:( 2594:e 2587:t 2580:v 2430:E 2425:C 2420:B 2410:A 2283:3 2278:2 2273:1 2248:O 2241:2 2236:1 2164:( 2150:e 2143:t 2136:v 2075:. 2053:: 2026:. 2014:: 1990:. 1970:: 1947:. 1922:. 1910:: 1877:. 1855:: 1849:6 1825:. 1793:: 1785:: 1758:. 1746:: 1723:. 1701:: 1693:: 1666:. 1644:: 1617:. 1605:: 1582:. 1570:: 1376:. 1284:/ 1276:/ 961:. 942:. 919:. 686:( 666:( 582:( 562:( 507:( 487:( 428:( 408:( 388:( 48:. 20:)

Index

Serine proteases

1CBW
EC no.
3.4.21.-
IntEnz
IntEnz view
BRENDA
BRENDA entry
ExPASy
NiceZyme view
KEGG
KEGG entry
MetaCyc
metabolic pathway
PRIAM
profile
PDB
RCSB PDB
PDBe
PDBsum
PMC
articles
PubMed
articles
NCBI
proteins

Crystal structure
Trypsin

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