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Spike protein

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The COVID-19 pandemic necessitated identification of viral particles in electron micrographs of patient tissue samples. A number of reports misidentified normal subcellular structures as coronaviruses due to their superficial resemblance to coronavirus morphology, and because the distinctive spikes
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system proposed in the 1960s, used the appearance and morphology of the "peplos" and peplomers as important characteristics for classification. More recently, the term "peplos" is considered a synonym for
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Mao, Youdong; Wang, Liping; Gu, Christopher; Herschhorn, Alon; Xiang, Shi-Hua; Haim, Hillel; Yang, Xinzhen; Sodroski, Joseph (September 2012).
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Kyriakidis, Nikolaos C.; López-Cortés, Andrés; González, Eduardo Vásconez; Grimaldos, Alejandra Barreto; Prado, Esteban Ortiz (December 2021).
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The term "peplomer" refers to an individual spike from the viral surface; collectively the layer of material at the outer surface of the
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Wang, Yuhang; Grunewald, Matthew; Perlman, Stanley (2020). "Coronaviruses: An Updated Overview of Their Replication and Pathogenesis".
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Bullock, Hannah A.; Goldsmith, Cynthia S.; Zaki, Sherif R.; Martines, Roosecelis B.; Miller, Sara E. (April 2021).
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Spikes or peplomers are usually rod- or club-shaped projections from the viral surface. Spike proteins are
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for the cell-surface receptor is usually located at the tip of the spike. Many spike proteins are
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in response to infection. For this reason the spike protein has been the focus of development for
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Woo, Patrick C. Y.; Huang, Yi; Lau, Susanna K. P.; Yuen, Kwok-Yung (24 August 2010).
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Le, Tung Thanh; Cramer, Jakob P.; Chen, Robert; Mayhew, Stephen (October 2020).
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Lwoff, André; Tournier, Paul (October 1966). "The Classification of Viruses".
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gene, collectively forming a spike protein complex that mediates viral entry.
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Lwoff, A.; Horne, R.; Tournier, P. (1 January 1962). "A System of Viruses".
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has been referred to as the "peplos". The term is derived from the Greek
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coronaviruses), have an additional shorter surface protein known as
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Comptes rendus hebdomadaires des séances de l'Académie des sciences
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subgroups have two surface proteins described as peplomers,
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Solodovnikov, Alexey; Arkhipova, Valeria (29 July 2021).
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in response to the COVID-19 pandemic caused by the virus
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Glycoprotein spike on a viral capsid or viral envelope
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Lwoff, A; Horne, RW; Tournier, P (13 June 1962). "".
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with other viral proteins, such as those forming the
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activity as a result, or in other cases they may be
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Cold Spring Harbor Symposia on Quantitative Biology
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These are 83:that forms a large structure known as a 529: 458: 645: 264:Spikes or peplomers can be visible in 7: 725:10.1146/annurev.mi.20.100166.000401 630:Fenner and White's medical virology 682:10.1016/B978-0-12-814515-9.02550-9 91:projecting from the surface of an 14: 842:Harrison, Stephen C. (May 2015). 371:of coronaviruses are apparent by 323:and is responsible for mediating 60:of one of the trimeric spikes of 628:Burrell, Christopher J. (2016). 489: 475: 461: 212:Spikes typically have a role in 167:that anchors the protein in the 667:Deng, X.; Baker, S.C. (2021). 453:of viruses with surface spikes 159:with typically large external 1: 944:Nature Reviews Drug Discovery 713:Annual Review of Microbiology 407:protein with both functions. 1093:Emerging Infectious Diseases 821:10.1101/sqb.1962.027.001.008 497:Human immunodeficiency virus 420:human immunodeficiency virus 177:protein–protein interactions 897:10.1007/978-1-0716-0900-2_1 856:10.1016/j.virol.2015.03.043 98:. The proteins are usually 1210: 1005:10.1038/s41541-021-00292-w 957:10.1038/d41573-020-00151-8 757:The dictionary of virology 434:, both expressed from the 31:Coronavirus spike proteins 18: 375:but much less visible in 317:coronavirus spike protein 216:. They may interact with 21:Coronavirus spike protein 673:Encyclopedia of Virology 426:formed by two proteins, 250:membrane fusion proteins 37:, the virus that causes 844:"Viral membrane fusion" 755:Mahy, B. W. J. (2009). 1105:10.3201/eid2704.204337 405:hemagglutinin esterase 365:hemagglutinin esterase 331:and accounts for most 321:class I fusion protein 218:cell-surface receptors 64: 50: 175:. They may also form 114:History and etymology 56: 29: 850:. 479–480: 498–507. 451:Electron micrographs 187:, more commonly via 183:. They are usually 165:transmembrane domain 49:are shown in orange. 589:The Free Dictionary 266:electron micrograph 65: 51: 1154:10.1038/nsmb.2351 906:978-1-0716-0899-9 424:protein complexes 383:Influenza viruses 353:betacoronaviruses 341:COVID-19 vaccines 270:enveloped viruses 157:membrane proteins 41:. The protein is 1201: 1176: 1175: 1165: 1133: 1127: 1126: 1116: 1099:(4): 1023–1031. 1084: 1078: 1077: 1067: 1057: 1055:10.3390/v2081803 1048:(8): 1804–1820. 1033: 1027: 1026: 1016: 984: 978: 977: 959: 935: 929: 928: 918: 884: 878: 877: 867: 839: 833: 832: 804: 798: 797: 777: 771: 770: 752: 737: 736: 708: 697: 696: 684: 664: 658: 657: 651: 643: 625: 602: 601: 599: 597: 580: 575:(3rd ed.). 574: 565: 559: 558: 556: 554: 545:. Archived from 534: 518:Viral life cycle 493: 479: 465: 335:produced by the 274:orthomyxoviruses 226:hemagglutinizing 77:peplomer protein 1209: 1208: 1204: 1203: 1202: 1200: 1199: 1198: 1184: 1183: 1180: 1179: 1135: 1134: 1130: 1086: 1085: 1081: 1035: 1034: 1030: 986: 985: 981: 950:(10): 667–668. 937: 936: 932: 907: 886: 885: 881: 841: 840: 836: 806: 805: 801: 779: 778: 774: 767: 754: 753: 740: 710: 709: 700: 693: 666: 665: 661: 644: 640: 627: 626: 605: 595: 593: 582: 567: 566: 562: 552: 550: 549:on 30 July 2021 536: 535: 531: 526: 509: 504: 503: 502: 499: 494: 485: 483:Influenza virus 480: 471: 466: 455: 454: 446: 413: 389:influenza virus 385: 359:(not including 310: 278:paramyxoviruses 262: 234:influenza virus 232:. For example, 220:located on the 210: 153: 116: 24: 17: 12: 11: 5: 1207: 1205: 1197: 1196: 1186: 1185: 1178: 1177: 1148:(9): 893–899. 1128: 1079: 1028: 979: 930: 905: 879: 834: 799: 772: 765: 738: 698: 691: 659: 639:978-0123751560 638: 603: 592:. Farlex. 2011 560: 528: 527: 525: 522: 521: 520: 515: 508: 505: 501: 500: 495: 488: 486: 481: 474: 472: 467: 460: 457: 456: 449: 448: 447: 445: 442: 412: 409: 384: 381: 373:negative stain 309: 306: 261: 258: 209: 206: 169:viral envelope 152: 149: 145:viral envelope 130:, such as the 128:viral taxonomy 115: 112: 15: 13: 10: 9: 6: 4: 3: 2: 1206: 1195: 1192: 1191: 1189: 1182: 1173: 1169: 1164: 1159: 1155: 1151: 1147: 1143: 1139: 1132: 1129: 1124: 1120: 1115: 1110: 1106: 1102: 1098: 1094: 1090: 1083: 1080: 1075: 1071: 1066: 1061: 1056: 1051: 1047: 1043: 1039: 1032: 1029: 1024: 1020: 1015: 1010: 1006: 1002: 998: 994: 990: 983: 980: 975: 971: 967: 963: 958: 953: 949: 945: 941: 934: 931: 926: 922: 917: 912: 908: 902: 898: 894: 890: 889:Coronaviruses 883: 880: 875: 871: 866: 861: 857: 853: 849: 845: 838: 835: 830: 826: 822: 818: 814: 810: 803: 800: 795: 791: 787: 783: 776: 773: 768: 766:9780080920368 762: 758: 751: 749: 747: 745: 743: 739: 734: 730: 726: 722: 718: 714: 707: 705: 703: 699: 694: 692:9780128145166 688: 683: 678: 674: 670: 663: 660: 655: 649: 641: 635: 631: 624: 622: 620: 618: 616: 614: 612: 610: 608: 604: 591: 590: 585: 578: 577:Elsevier, Inc 573: 572: 564: 561: 548: 544: 540: 533: 530: 523: 519: 516: 514: 511: 510: 506: 498: 492: 487: 484: 478: 473: 470: 464: 459: 452: 443: 441: 439: 438: 433: 429: 425: 421: 417: 410: 408: 406: 402: 401:hemagglutinin 398: 394: 393:neuraminidase 390: 382: 380: 378: 374: 368: 366: 362: 358: 357:embecoviruses 354: 350: 346: 342: 338: 337:immune system 334: 330: 326: 322: 318: 314: 313:Coronaviruses 308:Coronaviruses 307: 305: 303: 299: 295: 291: 290:coronaviruses 287: 283: 282:rhabdoviruses 279: 275: 271: 267: 259: 257: 255: 251: 247: 243: 242:neuraminidase 239: 238:hemagglutinin 235: 231: 227: 224:and may have 223: 219: 215: 207: 205: 203: 202:glycosylation 200: 198: 193: 191: 186: 185:glycoproteins 182: 178: 174: 170: 166: 162: 158: 150: 148: 146: 141: 137: 133: 129: 125: 121: 113: 111: 109: 105: 101: 100:glycoproteins 97: 94: 90: 86: 82: 78: 74: 73:spike protein 70: 63: 59: 55: 48: 44: 40: 36: 32: 28: 22: 1181: 1145: 1141: 1131: 1096: 1092: 1082: 1045: 1041: 1031: 996: 993:npj Vaccines 992: 982: 947: 943: 933: 888: 882: 847: 837: 812: 808: 802: 785: 781: 775: 756: 719:(1): 45–74. 716: 712: 672: 662: 629: 594:. Retrieved 587: 581:as cited in 570: 563: 551:. Retrieved 547:the original 532: 435: 418:such as the 416:Retroviruses 414: 411:Retroviruses 386: 377:thin section 369: 311: 302:retroviruses 298:arenaviruses 294:bunyaviruses 263: 246:binding site 211: 196: 189: 181:nucleocapsid 154: 117: 88: 84: 76: 72: 66: 43:glycosylated 675:: 198–207. 513:Viral entry 355:, known as 325:viral entry 286:filoviruses 214:viral entry 163:, a single 161:ectodomains 788:: 4225–7. 584:"peplomer" 524:References 469:SARS-CoV-2 345:SARS-CoV-2 333:antibodies 268:images of 151:Properties 102:that form 62:SARS-CoV-2 35:SARS-CoV-2 999:(1): 28. 974:221503034 815:: 51–55. 648:cite book 361:SARS-like 329:antigenic 222:host cell 208:Functions 93:enveloped 1194:Virology 1188:Category 1172:22864288 1123:33600302 1074:21994708 1023:33619260 966:32887942 925:32833200 874:25866377 848:Virology 829:13931895 794:14467544 596:30 March 507:See also 349:subgenus 315:exhibit 272:such as 260:Examples 254:antigens 140:Tournier 89:peplomer 69:virology 58:3D print 45:and its 39:COVID-19 1163:3443289 1114:8007326 1065:3185738 1042:Viruses 1014:7900244 916:7682345 865:4424100 733:5330240 579:. 2007. 553:30 July 444:Gallery 351:of the 230:enzymes 199:-linked 192:-linked 108:trimers 81:protein 47:glycans 1170:  1160:  1121:  1111:  1072:  1062:  1021:  1011:  972:  964:  923:  913:  903:  872:  862:  827:  792:  763:  731:  689:  636:  399:) and 397:enzyme 300:, and 244:. The 173:virion 124:peplos 120:virion 104:dimers 970:S2CID 432:gp120 387:Most 194:than 136:Horne 132:Lwoff 96:virus 85:spike 79:is a 1168:PMID 1119:PMID 1070:PMID 1019:PMID 962:PMID 921:PMID 901:ISBN 870:PMID 825:PMID 790:PMID 761:ISBN 729:PMID 687:ISBN 654:link 634:ISBN 598:2011 555:2021 430:and 428:gp41 395:(an 347:. A 240:and 71:, a 1158:PMC 1150:doi 1109:PMC 1101:doi 1060:PMC 1050:doi 1009:PMC 1001:doi 952:doi 911:PMC 893:doi 860:PMC 852:doi 817:doi 786:254 721:doi 677:doi 543:N+1 437:env 110:. 106:or 87:or 75:or 67:In 1190:: 1166:. 1156:. 1146:19 1144:. 1140:. 1117:. 1107:. 1097:27 1095:. 1091:. 1068:. 1058:. 1044:. 1040:. 1017:. 1007:. 995:. 991:. 968:. 960:. 948:19 946:. 942:. 919:. 909:. 899:. 868:. 858:. 846:. 823:. 813:27 811:. 784:. 741:^ 727:. 717:20 715:. 701:^ 685:. 671:. 650:}} 646:{{ 606:^ 586:. 379:. 367:. 304:. 296:, 292:, 288:, 284:, 280:, 276:, 256:. 204:. 147:. 1174:. 1152:: 1125:. 1103:: 1076:. 1052:: 1046:2 1025:. 1003:: 997:6 976:. 954:: 927:. 895:: 876:. 854:: 831:. 819:: 796:. 769:. 735:. 723:: 695:. 679:: 656:) 642:. 600:. 557:. 197:O 190:N 138:– 134:– 23:.

Index

Coronavirus spike protein

Coronavirus spike proteins
SARS-CoV-2
COVID-19
glycosylated
glycans

3D print
SARS-CoV-2
virology
protein
enveloped
virus
glycoproteins
dimers
trimers
virion
peplos
viral taxonomy
Lwoff
Horne
Tournier
viral envelope
membrane proteins
ectodomains
transmembrane domain
viral envelope
virion
protein–protein interactions

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