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first problem that I see is that the diagram uses x1, x2, x3 to denote states, yet x(t) is used elsewhere to denote the hidden state variable at time step t -- i.e. x(t) is a variable that can take on one of the values in a state space S (which here contains x1, x2, x3). Perhaps s1, s2, s3 would be more appropriate as states. Also, quite a few transitions are missing from the diagram. Furthermore, the diagram apparently contains three outputs y1, y2, y3 -- yet not all probabilities are specified through appropriate edges; only three probabilities are given: The probability of observing y1 given that the state is x1 (b1), the probability of observing y2 given state x2 (b2), and the probability of observing y3 given state x3 (b3). Shouldn't the model specify a probability for observing any output given any state, i.e.
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clean. Starting probabilities only need to be assumed and must total 1.00. Regardless of the starting point, one will arrive at the correct probability of what type of day it was. The probabilities can be solved directly using
Gaussian Elimination, the Grassmann Algorithm or indirectly using the Power Method, Jacobi's Method, or The Gauss-Seidel Method,Successive Over-Relaxation.
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emissions typically uses separate emission priors for each state, the reason being that otherwise the emission parameters would have to be statistically independent of the state sequence, which they are not. Joint conjugate emission priors aren't even typical for mixture models, which are a special case of HMM (with fixed uniform transitions), cf.
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I've added the genie-ball-urn model from
Rabiner 89 just at the start of the article. People who search for hmm in wikipedia are searching for something understandable. As it is now, research papers about hmms like Rabiner's one are much more understandable and accessible than wikipedia. I think the
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Indeed, to my understanding, a factorial HMM is a specific instance of an HMM, such that an exact solution is possible. With K HMM chains, and J possible states for each variable for a FHMM, we need an HMM with JˆK states - which means that a straightforward forward-backward algorithm would quickly
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of sequences. This is at least mentioned in the section "Using hidden Markov models". Therefore the sentence "The calculation can however be sped up enormously using the
Forward algorithm or the equivalent Backward algorithm" is not consistent in the context of the article and references the wrong
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Indeed I wondered about the reference to the
Viterbi algorithm for speeding up the calculation of posterior probabilities of an observed sequence. It is my understanding that the forward-backward algorithm calculates the posterior probability of a sequence and the Viterbi calculates the most likely
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Moreover, I think there is a problem with the diagram describing state transitions (i.e. the one at the top right), which, as far as I can tell, is supposed to graphically illustrate the probabilistic parameters of an HMM, i.e. the probabilities of state transitions and of making observations. The
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The article claims that a "typical
Bayesian HMM" has shared priors for its emission parameters. I'd really like to see some references for that. While a shared prior is used in cases like Dirichlet Process priors, the case given here, which uses Normal-(Inverse) Gamma as a conjugate for Gaussian
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The concrete example is good; however, the probability of the day being rainy or sunny is stated to be 57% and 43% respectively without giving the basis for the conclusion. These probabilities are dependent solely on the state transition diagram and are not dependent on the output: walk, shop,
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be intractable. According to the above reference, a more efficient exact inference is possible (through a junction tree? See references therein), but still quickly intractable. At last they propose a variational algorithm to approximate the inference (hence the citation in the main article).
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Shouldn't that be a mobile phone this day and age. Since it is in a transcluded example (which I think is a very poor choice for plain text content) someone with better transcluded-fu should edit it and maybe just cut and paste it as plain text in the article. No sensible reason for it to be
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The parameters of a hidden Markov model are of two types, transition probabilities and emission probabilities (also known as output probabilities). The transition probabilities control the way the hidden state at time t is chosen given the hidden state at time t − 1 {\displaystyle t-1}.
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P<-matrix(c( .7,.3, .4,.6 ),ncol=2,byrow=T) Identity<-matrix(c( 1,0, 0,1 ),ncol=2,byrow=T) A<-P n<-matrix(c(.6,.4),ncol=2) c<-1 cat(paste(c,n,'\n')) while(TRUE){ c<-c+1 nnew<-n%*%A cat(paste(c,nnew,'\n')) if(abs(nnew-n)/abs(n)<0.00000001){break} if(c:
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urn-model is much more readable to someone who has never attended a lecture on markov processes than the current article. I also discussed why people actually use HMMs and why the urn-model is just one possible model. There is some overlap with the current article.
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I think a far better reference would be
Churchill GA (1989) Stochastic models for heterogeneous DNA sequences. Bull Math Biol 51:79–94, which I think might be the first paper suggesting that a DNA sequence is determined by states in a Markove Model.
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UPDATE: After a number of months, it remains unclear why this section exists and what material it presents. Since no one came forward to address this, I am deleting this section as lacking substance and merely taking up space.
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algorithm, IMHO. In order to not confuse the article and to leave any modifications to the original author I will not do any changes here but start editing the forward-backward page. Hopefully this will be less confusing.
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In the second sentence we can read:" In a hidden Markov model, the state is not directly visible, but output, dependent on the state, is visible". It's me or it is a little difficult to understand?
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Agreed, Plato's cave seems like a bit of a stretch here. Probably a more down-to-earth explanation would be appropriate. Feel free to rework it if you have a better expression. Happy editing,
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in the state space? As it is, I think the diagram creates more confusion than it resolves; the second diagram showing the general architecture is what I expect to see in an article on HMMs.
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In the second half of the 1980s, HMMs began to be applied to the analysis of biological sequences, in particular DNA. Since then, they have become ubiquitous in the field of bioinformatics.
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This section reads like a random copy-paste from a relevant source without indicating what that source was. Please define the underlying concepts and introduce the subject carefully.
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I would have like to see something about covariates. --What they are. --Whether they are taken to modify the transition matrix or the probability distributions of the observables.
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I agree. Even the definition provides no context. It is also seriously lacking in inline citations. It needs quite a bit of work if it is to maintain its Good
Article status.
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Rationally, after a rainy day, the likely chance of a sunny day is much higher since rain is a release of water that was deposited in the sky as clouds during sunny days. . .
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I think this article needs a more formal definition where the various components (state transition matrix, output probabilities, state space, etc) are listed explicitly.
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Please correct me if I'm wrong, but doesn't the forward-backward algorithm actually compute the exact probability of an observed sequence? I'm referring to my
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It errs slightly on the technical side, but given the nature of the topic it is difficult not to. Overall, I'd suppose a good article proposal.
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I clarified the excellent urn example with some things that weren't clear without either knowing them already or referring to the cited work.
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state 2 doesn't produce the star so sequences 2 and 4 aren't possible for the observed sequence. I don't know how to correct this error.
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That reference seems relevant for the passage. However, I would disagree with the following statement (which is why I added a warning):
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Should be three things not two? The preceding weather guessing game model also includes "start probabilities". Don't we need that too?
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as two contributors with recent wiki activity, what are your thoughts? Comments from anyone else are also welcomed, of course. Thanks!
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1362:, these subpages are now deprecated. The comments may be irrelevant or outdated; if so, please feel free to remove this section.
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transcluded, unless it is in a huge number of articles, and I doubt the sanity of having it in numbers of articles. --
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interesting as well: HMM used to analyze sequences of HTTPS requests to find the most plausible resources accessed.
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Maybe we can add a paragraph describing the three main functions: Evaluate, Decode and Learn. What do you think?
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This article could be improved by including examples from bioinformatics such as protein family profile HMMs. -
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The urn thing makes it sound like the balls aren't replaced but for the process to work they would have to be
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Is the reference to Plato's allegory absolutely necessary ? I don't feel like it helps the explanation here.
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on
Knowledge (XXG). If you would like to participate, please visit the project page, where you can join
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on
Knowledge (XXG). If you would like to participate, please visit the project page, where you can join
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on
Knowledge (XXG). If you would like to participate, please visit the project page, where you can join
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on 25 August 2016. For the contribution history and old versions of the redirected page, please see
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There are three maintenance tags in the lead that need to be addressed before this can pass GA.
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Hope this helps, and if people agree with it, the main article shall be changed accordingly.
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In this example, there is only a 30% chance that tomorrow will be sunny if today is rainy.
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This article seems in quite good shape, and has been rated B-class and top-importance by
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Last edited at 23:14, 8 December 2007 (UTC). Substituted at 17:53, 29 April 2016 (UTC)
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We does everyone think of the following replacement graphs/diagrams in SVG format? --
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This solves the probabilities of a rain or sunny day by iterating to convergence.
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Here is an implementation in R of the Power Method of solving the probabilities:
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Ghahramani, Zoubin; Jordan, Michael I. (1997). "Factorial Hidden Markov Model".
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Also, "Structural Architecture" ... what other kind of architecture is there?
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Huge amounts of citations needed, so I'm placing the article on hold.
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https://www.sciencedirect.com/science/article/pii/S0169716105250162
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Hi, the textbook explanation of HMM's link seems to be broken.
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2042:Unknown-importance Molecular Biology articles
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96:Put new text under old text.
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1968:Cimon Avaro; on a pogostick.
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606:First paragraph
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545:High-importance
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486:High‑importance
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1819:No Dead links
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1808:No DAB links
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1634:GA Criteria:
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852:'s references
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644:First Diagram
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597:its talk page
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369:(assessed as
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177:Find sources:
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164:Verifiability
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106:Learn to edit
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1881:Amkilpatrick
1837:
1833:Amkilpatrick
1633:
1595:
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1573:
1560:
1549:Instructions
1450:Amkilpatrick
1423:
1400:— Preceding
1392:
1384:
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1323:— Preceding
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717:— Preceding
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664:Mental Model
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263:WikiProjects
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73:This is the
52:
43:please do so
31:
30:
26:
1893:Consermonor
1854:Consermonor
1627:GA Criteria
1604:Consermonor
1563:transcluded
1199:—Preceding
1180:Loniousmonk
810:About rain.
782:—Preceding
744:—Preceding
671:Maximilianh
651:Maximilianh
592:its history
202:free images
85:not a forum
2021:Categories
1999:Covariates
1961:Telephone?
1844:WP:SCICITE
1516:Authorship
1502:GA toolbox
1440:. Pinging
862:ciphergoth
850:User:Jiali
581:page were
431:Statistics
422:statistics
394:Statistics
37:under the
1898:Opus meum
1859:Opus meum
1609:Opus meum
1575:Reviewer:
1539:Templates
1530:Reviewing
1495:GA Review
1287:Jldurrieu
835:MarkSweep
825:Shushinla
703:BubbaRich
142:if needed
125:Be polite
75:talk page
1618:Criteria
1588:contribs
1544:Criteria
1402:unsigned
1370:tameeria
1337:contribs
1325:unsigned
1201:unsigned
1080:Thorwald
867:I found
784:unsigned
758:contribs
750:Leven101
746:unsigned
719:unsigned
685:insanely
625:Untitled
520:Robotics
511:Robotics
483:Robotics
253:GA-class
110:get help
83:This is
81:article.
47:reassess
1888:Iazyges
1849:Iazyges
1599:Iazyges
1578:Iazyges
1465:Klbrain
1446:Klbrain
1329:RMLane1
1189:Tomixdf
547:on the
458:on the
287:COMPBIO
208:WP refs
196:scholar
1937:(talk)
1438:WP:GAI
1074:Graphs
583:merged
259:scale.
180:Google
54:Review
1565:from
1320:] )
1107:linas
585:into
223:JSTOR
184:books
138:Seek
2009:talk
1972:talk
1952:talk
1932:corn
1918:talk
1788:6.b
1777:6.a
1761:5.a
1745:4.a
1729:3.b
1718:3.a
1701:2.d
1690:2.c
1679:2.b
1668:2.a
1652:1.b
1641:1.a
1582:talk
1483:talk
1469:talk
1454:talk
1444:and
1428:for
1410:talk
1374:talk
1333:talk
1291:talk
1232:talk
1228:BJJV
1221:path
1209:talk
1016:for
892:JeDi
877:talk
869:this
792:talk
754:talk
727:talk
707:talk
693:talk
675:talk
655:talk
616:talk
539:High
216:FENS
190:news
127:and
1929:AIR
1398:.
1313:-->
1260:doi
1141:KYN
450:Mid
341:???
230:TWL
49:it.
2023::
2011:)
1974:)
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108:;
63:).
2007:(
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1883::
1879:@
1835::
1831:@
1826:Y
1815:Y
1795:Y
1784:Y
1768:Y
1752:Y
1736:Y
1725:Y
1708:Y
1697:Y
1686:Y
1675:Y
1659:Y
1648:Y
1585:·
1580:(
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