21:
155:
129:
239:
This bot has created or amended ~9,000 pages corresponding to mammalian genes. Each new page was seeded with content from databases in the public domain. This content included information about the gene's symbol, description, function, genomic location, structure and identifiers. Genes which did
218:
for protein structure images corresponding to the protein box subject. If it finds one, the image is added; if not and sufficient information is available, the bot generates, uploads, and links a new image. This bot does not create pages or edit full-text articles (for the time being). The source
167:
The Gene Wiki project was initiated in 2007 or so as an effort to systematically improve the state of gene articles in
Knowledge (XXG). The primary mechanism for that project was data-driven bot edits based on commonly-used databases in biomedical research (e.g., NCBI Entrez, UniProt, PDB). More
213:
gene annotation service (which itself compiles information from public-domain databases) and compares it to the values in the existing article infoboxes. If the article information is out of date, incorrect, or missing, the infobox is updated with the correct values. It then scans the
524:
183:
In this phase of the
ProteinBoxBot, we will expand the scope beyond human genes and proteins. This plan is currently in its infancy and under active discussion. Scope has been discussed with
136:
465:
If a corresponding
Knowledge (XXG) page already exists, it will be automatically loaded. If not, a page creation interface will be shown (but may take up to one minute to appear).
309:
83:
184:
321:
191:
315:
175:
Currently, we are expanding this game plan to other biomedical concepts. More details are in the
ProteinBoxBot 3 section below.
519:
20:
209:
A new version of the bot was created to maintain the
Protein Boxes on Gene Wiki pages. It queries information from the
71:
67:
303:
198:
387:
398:
28:
420:
354:
343:
244:). Genes which did have these conflicts in the wikipedia namespace were flagged for manual integration (e.g.,
376:
197:). In order to centralize the discussion among all interested parties, please consult the project page at
87:
75:
504:
409:
58:
477:
It may take some time for BioGPS to register the update, but you should be able to see it by viewing the
79:
220:
43:
365:
188:
172:. Some historical context is provided in the ProteinBoxBot and ProteinBoxBot2 sections below.
215:
54:
32:
478:
253:
245:
240:
not have any existing wikipedia pages for its symbol, aliases, or title were created (e.g.,
195:
169:
160:
257:
435:
332:
224:
284:
249:
228:
39:
513:
274:
498:
269:
279:
150:
74:
edits that would be extremely tedious to do manually, in accordance with the
492:
118:
290:
505:
https://code.google.com/archive/p/protein-box-bot/source/default/source
128:
95:
Administrators: if this bot is malfunctioning or causing harm, please
241:
82:, either due to a bot malfunction, or a violation of either its
441:
tag to a page or template to prevent the bot from editing it:
15:
248:). This bot is currently being designed and developed by
310:
Knowledge (XXG):Bots/Requests for approval/ProteinBoxBot
525:
WikiProject
Molecular and Cellular Biology participants
96:
210:
455:
223:. This version is being designed and maintained by
471:after choosing the page name (follow the prompts).
499:https://code.google.com/archive/p/genewiki/source
8:
137:Molecular & Cellular Biology WikiProject
427:Disabling bot edits on specific gene pages
326:Templates used primarily by ProteinBoxBot
493:https://bitbucket.org/eclarke/pygenewiki
185:Knowledge (XXG):WikiProject Pharmacology
168:info on this initiative can be found at
459:, then search for your gene of interest
7:
322:User:ProteinBoxBot/Protein_Directory
192:Knowledge (XXG):WikiProject Medicine
123:
479:ProteinBoxBot's user contributions
256:, with substantial input from the
14:
289:plus some Wikidata-only accounts
219:code for the bot is available at
316:User:ProteinBoxBot/PBB_Log_Index
153:
127:
19:
66:It is used to make repetitive
1:
448:How to create a new gene page
134:This user is a member of the
463:View the "Gene Wiki" window.
308:Archived bot approval page:
302:Requests for page creation:
221:the GeneWiki code repository
205:ProteinBoxBot 2 (circa 2011)
179:ProteinBoxBot 3 (circa 2013)
541:
235:ProteinBoxBot (circa 2008)
199:User:ProteinBoxBot/Phase 3
520:All Knowledge (XXG) bots
421:User:ProteinBoxBot/Ideas
419:Ideas for the future:
320:Bot Page Directory:
314:Bot Log File Index:
227:in conjunction with
388:PBB Further reading
399:PBB Image citation
78:. It is currently
475:Confirm creation.
304:the requests page
148:
147:
143:
142:
108:
107:
102:
84:terms of approval
532:
440:
434:
414:
408:
403:
397:
392:
386:
381:
375:
370:
364:
359:
353:
348:
344:GNF Ortholog box
342:
337:
331:
246:Apolipoprotein_E
170:Portal:Gene Wiki
163:
161:Gene Wiki portal
158:
157:
156:
131:
124:
119:
101:
92:
65:
53:
49:
37:
23:
16:
540:
539:
535:
534:
533:
531:
530:
529:
510:
509:
488:
469:Create the page
450:
445:
438:
432:
429:
412:
406:
401:
395:
390:
384:
379:
373:
368:
362:
357:
355:GNF_Protein_box
351:
346:
340:
335:
329:
299:
297:Technical links
266:
237:
207:
181:
159:
154:
152:
149:
144:
116:
110:
93:
91:
63:
51:
47:
35:
12:
11:
5:
538:
536:
528:
527:
522:
512:
511:
508:
507:
501:
495:
487:
484:
483:
482:
472:
466:
460:
449:
446:
443:
428:
425:
424:
423:
417:
416:
415:
404:
393:
382:
371:
360:
349:
338:
324:
318:
312:
306:
298:
295:
294:
293:
287:
282:
277:
272:
265:
262:
236:
233:
206:
203:
180:
177:
165:
164:
146:
145:
141:
140:
132:
122:
117:
115:
112:
106:
105:
103:
72:semi-automated
24:
13:
10:
9:
6:
4:
3:
2:
537:
526:
523:
521:
518:
517:
515:
506:
502:
500:
496:
494:
490:
489:
485:
480:
476:
473:
470:
467:
464:
461:
458:
457:
452:
451:
447:
442:
437:
426:
422:
418:
411:
405:
400:
394:
389:
383:
378:
372:
367:
361:
356:
350:
345:
339:
334:
328:
327:
325:
323:
319:
317:
313:
311:
307:
305:
301:
300:
296:
292:
288:
286:
283:
281:
278:
276:
273:
271:
268:
267:
263:
261:
259:
255:
251:
247:
243:
234:
232:
230:
226:
222:
217:
212:
204:
202:
200:
196:
193:
189:
186:
178:
176:
173:
171:
162:
151:
139:
138:
133:
130:
126:
125:
121:
120:
113:
111:
104:
100:
98:
89:
85:
81:
77:
73:
69:
62:
60:
56:
45:
41:
34:
30:
25:
22:
18:
17:
474:
468:
462:
453:
439:}}
433:{{
430:
413:}}
407:{{
402:}}
396:{{
391:}}
385:{{
380:}}
377:PBB Controls
374:{{
369:}}
363:{{
358:}}
352:{{
347:}}
341:{{
336:}}
330:{{
238:
208:
182:
174:
166:
135:
109:
94:
55:Julialturner
38:operated by
29:user account
26:
486:Source code
410:PBB Summary
260:community.
254:JonSDSUGrad
211:MyGene.info
514:Categories
456:biogps.org
444:{{nobots}}
225:Pleiotrope
88:bot policy
76:bot policy
285:Andrew Su
250:AndrewGNF
229:AndrewGNF
68:automated
40:Andrew Su
431:Add the
275:Emitraka
264:The team
114:Overview
97:block it
270:Sebotic
216:Commons
86:or the
80:blocked
454:Go to
436:nobots
333:GNF GO
258:WP:MCB
190:) and
64:
52:
48:
36:
503:(v1)
497:(v2)
491:(v3)
280:I9606
31:is a
27:This
291:here
252:and
242:MMP9
59:talk
44:talk
366:PBB
70:or
50:and
33:bot
516::
231:.
201:.
90:.
61:).
481:.
194:(
187:(
99:.
57:(
46:)
42:(
Text is available under the Creative Commons Attribution-ShareAlike License. Additional terms may apply.
