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Building block (chemistry)

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114:, or in order to realize the ideas of virtual screening and drug design are also called building blocks. To be practically useful for the modular drug or drug candidate assembly, the building blocks should be either mono-functionalised or possessing selectively chemically addressable functional groups, for example, orthogonally protected. Selection criteria applied to organic functionalized molecules to be included in the building block collections for medicinal chemistry are usually based on empirical rules aimed at 134:
collections prepared for fast and reliable construction of small-molecule sets of compounds (libraries) for biological screening became one of the major strategies for pharmaceutical industry involved in drug discovery; modular, usually one-step synthesis of compounds for biological screening from building blocks turned out to be in most cases faster and more reliable than multistep, even convergent syntheses of target compounds.
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The building block approach to drug discovery changed the landscape of chemical industry which supports medicinal chemistry. Major chemical suppliers for medicinal chemistry like Maybridge, Chembridge, Enamine adjusted their business correspondingly. By the end of the 1990th the use of building block
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A.J. Cairns; J.A. Perman; L. Wojtas; V.Ch. Kravtsov; M.H. Alkordi; M.Eddaoudi; M.J. Zaworotko (2008). "Supermolecular Building Blocks (SBBs) and Crystal Design: 12-Connected Open Frameworks Based on a Molecular Cubohemioctahedron".
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V.S. Yarmolchuk; O.V. Shishkin; V.S. Starova; O.A. Zaporozhets; O. Kravchuk; S. Zozulya; I.V. Komarov; P.K. Mykhailiuk (2013). "Synthesis and Characterization of β-Trifluoromethyl-Substituted Pyrrolidines".
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A.V. Tymtsunik; V.A. Bilenko; S.O. Kokhan; O.O. Grygorenko; D.M. Volochnyuk; I.V. Komarov (2012). "1-Alkyl-5-((di)alkylamino) Tetrazoles: Building Blocks for Peptide Surrogates".
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R.Breinbauer; I. R. Vetter; H.Waldmann (2002). "From Protein Domains to Drug Candidates—Natural Products as Guiding Principles in the Design and Synthesis of Compound Libraries".
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properties, therefore, the fluorine-substituted building blocks in drug design increase the probability of finding drug leads. Other examples include natural and unnatural
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O. K. Farha; C. D. Malliakas; M.G. Kanatzidis; J.T. Hupp (2010). "Control over Catenation in Metal−Organic Frameworks via Rational Design of the Organic Building Block".
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F.W. Goldberg; J.G. Kettle; T. Kogej; M.W.D. Perry; N.P. Tomkinson (2015). "Designing novel building blocks is an overlooked strategy to improve compound quality".
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G. Schneider; M.-L. Lee; M. Stahl; P. Schneider (2000). "De novo design of molecular architectures by evolutionary assembly of drug-derived building blocks".
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L. Zang; Y. Che; J.S. Moore (2008). "One-Dimensional Self-Assembly of Planar π-Conjugated Molecules: Adaptable Building Blocks for Organic Nanodevices".
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A. Kluczyk; T. Popek; T. Kiyota; P. de Macedo; P. Stefanowicz; C. Lazar; Y. Konishi (2002). "Drug Evolution: p-Aminobenzoic Acid as a Building Block".
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Organic functionalized molecules (reagents), carefully selected for the use in modular synthesis of novel drug candidates, in particular, by
98:. Of special interest for this purpose are the building blocks common to known biologically active compounds, in particular, known drugs, or 1058:
O.O. Grygorenko; D.S. Radchenko; D.M. Volochnyuk; A.A. Tolmachev; I.V. Komarov (2011). "Bicyclic Conformationally Restricted Diamines".
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A. Linusson; J. Gottfries; F. Lindgren; S. Wold (2000). "Statistical Molecular Design of Building Blocks for Combinatorial Chemistry".
535: 672:"Conformationally restricted monoprotected diamines as scaffolds for design of biologically active compounds and peptidomimetics" 1021:"Conformationally rigid cyclic α-amino acids in the design of peptidomimetics, peptide models and biologically active compounds" 248:"Dendrimers and other dendritic macromolecules: From building blocks to functional assemblies in nanoscience and nanotechnology" 102:. There are algorithms for de novo design of molecular architectures by assembly of drug-derived virtual building blocks. 34:
which is used to describe a virtual molecular fragment or a real chemical compound the molecules of which possess reactive
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complexes. Using building blocks ensures strict control of what a final compound or a (supra)molecular construct will be.
162: 149:-containing building blocks. Introduction of the fluorine into a molecule has been shown to be beneficial for its 670:
A.N. Shivanyuk; D.M. Volochnyuk; I.V. Komarov; K.G. Nazarenko; D.S. Radchenko; A. Kostyuk; A.A. Tomachev (2007).
806:"A MARKET GROWS, BLOCK BY BLOCK. Pharmaceutical building-block business attracts firms from ACROSS THE GLOBE". 47: 876: 111: 43: 122:
replacements of the molecular fragments in drug candidates could be made using analogous building blocks.
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Construction of complex molecular architectures is easily possible using simple building blocks
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G. Schneider; H.-J. Böhm (2002). "Virtual screening and fast automated docking methods".
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G. Schneider; U. Fechner (2005). "Computer-based de novo design of drug-like molecules".
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Typical examples of building block collections for medicinal chemistry are libraries of
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libraries, collections of conformationally constrained bifunctionalized compounds and
38:. Building blocks are used for bottom-up modular assembly of molecular architectures: 1142: 1044: 473: 430: 722: 586: 115: 39: 1005: 911: 749: 173: 119: 87: 371: 819: 414: 158: 62:, the term defines either imaginable, virtual molecular fragments or chemical 933:
M Schlosser (2006). "CF3-Bearing Aromatic and Heterocyclic Building Blocks".
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J. Wang; T. Hou (2010). "Drug and Drug Candidate Building Block Analysis".
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10.1002/1521-3773(20020816)41:16<2878::AID-ANIE2878>3.0.CO;2-B
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R.S. Tu; M. Tirrell (2004). "Bottom-up design of biomimetic assemblies".
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and two building blocks BB1 and BB2 from which it could be synthesized
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I. Muegge (2003). "Selection criteria for drug-like compounds".
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I.V. Komarov; A.O. Grigorenko; A.V. Turov; V.P. Khilya (2004).
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J. Drews (2000). "Drug Discovery: A Historical Perspective".
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Index


chemistry
functional groups
nano-particles
metal-organic frameworks
supra-molecular
medicinal chemistry
reagents
drugs
drug candidates
drug discovery
drug design
virtual screening
biological targets
natural products
combinatorial chemistry
drug-like
Bioisosteric
chemical industry
fluorine
pharmacokinetic
pharmacodynamic
amino acid
diversity-oriented

Saxagliptin
Organic Building Blocks of the Chemical Industry
doi
10.1021/ar800030w
PMID

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