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EcoCyc can be accessed through the EcoCyc web site, as a set of downloadable files, and in conjunction with the
Pathway Tools software that can be installed locally on Macintosh, PC/Windows, and PC/Linux computers. The downloadable software provides capabilities that go well beyond the web version
211:
Keseler, Ingrid M; Collado-Vides Julio; Santos-Zavaleta
Alberto; Peralta-Gil Martin; Gama-Castro Socorro; Muñiz-Rascado Luis; Bonavides-Martinez César; Paley Suzanne; Krummenacker Markus; Altman Tomer; Kaipa Pallavi; Spaulding Aaron; Pacheco John; Latendresse Mario; Fulcher Carol; Sarker Malabika;
184:, transport events, and the regulation of gene expression. EcoCyc provides several genome-scale visualization tools to aid in the analysis of omics data, such as by painting gene expression or metabolomics data onto the full regulatory network of
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genes, distilled from over 36,000 scientific articles. EcoCyc is also a description of the genome and cellular networks of
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transcriptional regulation, transporters, and metabolic pathways. EcoCyc contains written summaries of
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Shearer
Alexander G; Mackie Amanda; Paulsen Ian; Gunsalus Robert P; Karp Peter D (Jan 2011).
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and gene product. Database objects also describe molecular interactions, including
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K-12. The EcoCyc project performs literature-based curation of the
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that supports scientists to carry out computational analyses.
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Karp PD, Riley M, Paley SM, Pelligrini-Toole A (1996).
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173:Data objects in the EcoCyc database describe each
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386:2006 North American (multiple; O157:H7)
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381:2006 North American (spinach; O157:H7)
214:"EcoCyc: a comprehensive database of
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228:(Database issue). England: D583–90.
16:Bioinformatics database for E. coli
640:. You can help Knowledge (XXG) by
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411:2024 United Kingdom (STEC O145)
556:Long-term evolution experiment
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267:"EcoCyc: an encyclopedia of
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42:comprehensive database of
697:Biological database stubs
108:Keseler & al. (2011)
24:
376:2005 South Wales (O157)
636:-related article is a
396:2011 Germany (O104:H4)
271:genes and metabolism"
687:Biological databases
361:1993 Jack in the Box
634:Biological database
530:Verotoxin-producing
391:2009 United Kingdom
287:10.1093/nar/24.1.32
234:10.1093/nar/gkq1143
143:biological database
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490:Enteroaggregative
401:2015 United States
182:metabolic pathways
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606:Theodor Escherich
566:Molecular biology
495:Enterohemorrhagic
275:Nucleic Acids Res
222:Nucleic Acids Res
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86:SRI International
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105:Primary citation
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44:Escherichia coli
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442:FNR regulon
281:(1): 32–9.
192:of EcoCyc.
39:Description
681:Categories
596:Rho factor
586:Pathogenic
581:Min System
546:Aerobactin
427:CPS operon
196:References
96:Peter Karp
82:Laboratory
591:EnvZ/OmpR
354:Outbreaks
147:bacterium
52:Organisms
510:O104:H21
252:21097882
218:biology"
145:for the
46:biology.
539:Related
525:O157:H7
515:O104:H4
482:Strains
305:8594595
243:3013716
186:E. coli
175:E. coli
168:E. coli
164:E. coli
160:E. coli
156:E. coli
118:Website
92:Authors
65:Contact
34:Content
576:LacUV5
561:EcoCyc
452:RecBCD
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296:145574
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139:EcoCyc
123:ecocyc
113:Access
20:EcoCyc
632:This
420:Genes
141:is a
99:et al
638:stub
520:O121
472:RpoS
467:RpoN
462:RpoF
457:RpoE
447:OmpT
432:DnaG
301:PMID
248:PMID
178:gene
125:.org
437:Fis
291:PMC
283:doi
238:PMC
230:doi
133:In
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Text is available under the Creative Commons Attribution-ShareAlike License. Additional terms may apply.
