Knowledge (XXG)

Protein structure reconstruction

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Gront, Dominik; Kmiecik, Sebastian; Kolinski, Andrzej (2007-07-15). "Backbone building from quadrilaterals: a fast and accurate algorithm for protein backbone reconstruction from alpha carbon coordinates".
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Moore, Benjamin L.; Kelley, Lawrence A.; Barber, James; Murray, James W.; MacDonald, James T. (2013-08-15). "High-quality protein backbone reconstruction from alpha carbons using Gaussian mixture models".
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atoms only. There are many computational tools for protein structure reconstruction that are usually focused on specific reconstruction tasks which include: backbone reconstruction from alpha carbons,
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Badaczewska-Dawid, Aleksandra E.; Kolinski, Andrzej; Kmiecik, Sebastian (2020-01-01).
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reconstruction from heavy atoms positions and recovery of protein structure from
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Canutescu, Adrian A.; Shelenkov, Andrew A.; Dunbrack, Roland L. (2003).
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from incomplete coarse-grained representations like, for example,
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Vendruscolo, Michele; Kussell, Edo; Domany, Eytan (1997-10-01).
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Reconstruction of proteins from incomplete representations
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refers to constructing an atomic-resolution model of a
49: 39: 168:Computational and Structural Biotechnology Journal 221:"Recovery of protein structure from contact maps" 540: 289:Rotkiewicz, Piotr; Skolnick, Jeffrey (2008). 8: 547: 533: 475: 322: 254: 236: 195: 151: 7: 501: 499: 284: 282: 157: 155: 519:. You can help Knowledge (XXG) by 401:Journal of Computational Chemistry 349:Journal of Computational Chemistry 295:Journal of Computational Chemistry 14: 503: 74:Protein structure reconstruction 23: 1: 256:10.1016/S1359-0278(97)00041-2 587: 498: 180:10.1016/j.csbj.2019.12.007 133:Side chain reconstruction 117:Backbone reconstruction 38:, as no other articles 515:-related article is a 96:reconstruction from 82:protein contact maps 460:10.1110/ps.03154503 247:1997cond.mat..5211V 225:Folding and Design 57:for suggestions. 47:to this page from 528: 527: 413:10.1002/jcc.23330 407:(22): 1881–1889. 361:10.1002/jcc.20624 307:10.1002/jcc.20906 78:protein structure 71: 70: 578: 549: 542: 535: 507: 500: 490: 489: 479: 454:(9): 2001–2014. 439: 433: 432: 395: 389: 388: 355:(9): 1593–1597. 343: 337: 336: 326: 301:(9): 1460–1465. 286: 277: 276: 258: 240: 238:cond-mat/9705211 216: 210: 209: 199: 159: 66: 63: 52: 50:related articles 27: 19: 586: 585: 581: 580: 579: 577: 576: 575: 556: 555: 554: 553: 496: 494: 493: 448:Protein Science 441: 440: 436: 397: 396: 392: 345: 344: 340: 288: 287: 280: 218: 217: 213: 161: 160: 153: 148: 114: 84:, positions of 67: 61: 58: 48: 45:introduce links 28: 17: 12: 11: 5: 584: 582: 574: 573: 568: 558: 557: 552: 551: 544: 537: 529: 526: 525: 508: 492: 491: 434: 390: 338: 278: 231:(5): 295–306. 211: 150: 149: 147: 144: 143: 142: 139: 130: 129: 126: 123: 113: 110: 102:hydrogen atoms 98:backbone chain 90:backbone chain 88:atoms only or 69: 68: 55:Find link tool 31: 29: 22: 15: 13: 10: 9: 6: 4: 3: 2: 583: 572: 571:Protein stubs 569: 567: 564: 563: 561: 550: 545: 543: 538: 536: 531: 530: 524: 522: 518: 514: 509: 506: 502: 497: 487: 483: 478: 473: 469: 465: 461: 457: 453: 449: 445: 438: 435: 430: 426: 422: 418: 414: 410: 406: 402: 394: 391: 386: 382: 378: 374: 370: 366: 362: 358: 354: 350: 342: 339: 334: 330: 325: 320: 316: 312: 308: 304: 300: 296: 292: 285: 283: 279: 274: 270: 266: 262: 257: 252: 248: 244: 239: 234: 230: 226: 222: 215: 212: 207: 203: 198: 193: 189: 185: 181: 177: 173: 169: 165: 158: 156: 152: 145: 140: 137: 136: 135: 134: 127: 124: 121: 120: 119: 118: 111: 109: 107: 103: 99: 95: 91: 87: 83: 79: 75: 65: 56: 51: 46: 42: 41: 37: 32:This article 30: 26: 21: 20: 521:expanding it 510: 495: 451: 447: 437: 404: 400: 393: 352: 348: 341: 298: 294: 228: 224: 214: 171: 167: 132: 131: 116: 115: 106:contact maps 86:alpha carbon 73: 72: 59: 33: 174:: 162–176. 94:side-chains 62:August 2023 560:Categories 146:References 53:; try the 40:link to it 468:1469-896X 369:0192-8651 315:1096-987X 265:1359-0278 188:2001-0370 43:. Please 566:Proteins 486:12930999 429:10928754 421:23703289 377:17342707 333:18196502 206:31969975 112:Software 513:protein 477:2323997 385:8836253 324:2692024 273:9377713 243:Bibcode 197:6961067 138:Pulchra 122:Pulchra 100:atoms, 484:  474:  466:  427:  419:  383:  375:  367:  331:  321:  313:  271:  263:  204:  194:  186:  36:orphan 34:is an 511:This 425:S2CID 381:S2CID 233:arXiv 141:SCWRL 517:stub 482:PMID 464:ISSN 417:PMID 373:PMID 365:ISSN 329:PMID 311:ISSN 269:PMID 261:ISSN 202:PMID 184:ISSN 472:PMC 456:doi 409:doi 357:doi 319:PMC 303:doi 251:doi 192:PMC 176:doi 128:PD2 125:BBQ 562:: 480:. 470:. 462:. 452:12 450:. 446:. 423:. 415:. 405:34 403:. 379:. 371:. 363:. 353:28 351:. 327:. 317:. 309:. 299:29 297:. 293:. 281:^ 267:. 259:. 249:. 241:. 227:. 223:. 200:. 190:. 182:. 172:18 170:. 166:. 154:^ 108:. 548:e 541:t 534:v 523:. 488:. 458:: 431:. 411:: 387:. 359:: 335:. 305:: 275:. 253:: 245:: 235:: 229:2 208:. 178:: 64:) 60:(

Index


orphan
link to it
introduce links
related articles
Find link tool
protein structure
protein contact maps
alpha carbon
backbone chain
side-chains
backbone chain
hydrogen atoms
contact maps


"Computational reconstruction of atomistic protein structures from coarse-grained models"
doi
10.1016/j.csbj.2019.12.007
ISSN
2001-0370
PMC
6961067
PMID
31969975
"Recovery of protein structure from contact maps"
arXiv
cond-mat/9705211
Bibcode
1997cond.mat..5211V

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