Knowledge (XXG)

Uberon

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Chen, C. K.; Mungall, C. J.; Gkoutos, G. V.; Doelken, S. C.; Köhler, S.; Ruef, B. J.; Smith, C.; Westerfield, M.; Robinson, P. N.; Lewis, S. E.; Schofield, P. N.; Smedley, D. (2012).
485: 519: 524: 514: 27: 478: 165: 504: 201: 509: 471: 100: 223:
Mungall, Christopher J; Torniai Carlo; Gkoutos Georgios V; Lewis Suzanna E; Haendel Melissa A (2012).
197: 451: 162: 278:; Mungall, C. J.; Ashburner, M.; Westerfield, M.; Lewis, S. E. (2009). Buetow, Kenneth H (ed.). 409: 360: 311: 256: 455: 399: 391: 350: 342: 301: 291: 246: 236: 146: 275: 196:
and develops-from. One of the uses of this ontology is to integrate data from different
404: 379: 355: 330: 306: 279: 251: 224: 498: 280:"Linking Human Diseases to Animal Models Using Ontology-Based Phenotype Annotation" 189: 121: 296: 95: 192:. These structures are connected to other structures via relationships such as 241: 413: 364: 315: 260: 346: 185: 57: 111: 395: 193: 177: 169: 62: 128: 443: 26: 134: 173: 380:"MouseFinder: Candidate disease genes from mouse phenotype data" 331:"PhenomeNET: A whole-phenome approach to disease gene discovery" 181: 329:
Hoehndorf, R.; Schofield, P. N.; Gkoutos, G. V. (2011).
459: 225:"Uberon, an integrative multi-species anatomy ontology" 42:
Uberon, an integrative multi-species anatomy ontology.
429: 200:, and other species-specific ontologies such as the 145: 140: 127: 117: 107: 94: 89: 81: 73: 68: 56: 46: 38: 33: 122:http://purl.obolibrary.org/obo/uberon/merged.owl 218: 216: 168:representing a variety of structures found in 479: 8: 19: 486: 472: 18: 403: 354: 305: 295: 250: 240: 212: 16:Representation of anatomical structures 112:http://obophenotype.github.io/uberon/ 7: 440: 438: 458:. You can help Knowledge (XXG) by 14: 442: 135:http://sparql.hegroup.org/sparql 25: 520:Ontology (information science) 159:Uber-anatomy ontology (Uberon) 1: 202:Foundational Model of Anatomy 297:10.1371/journal.pbio.1000247 541: 437: 525:Biological database stubs 77:Mungall & al. (2012) 24: 242:10.1186/gb-2012-13-1-r5 515:Anatomical terminology 454:-related article is a 335:Nucleic Acids Research 52:Anatomical Structures 505:Biological databases 198:biological databases 510:Comparative anatomy 452:Biological database 274:Washington, N. L.; 163:comparative anatomy 21: 396:10.1002/humu.22051 347:10.1093/nar/gkr538 235:(1). England: R5. 467: 466: 430:http://uberon.org 155: 154: 532: 488: 481: 474: 446: 439: 418: 417: 407: 375: 369: 368: 358: 326: 320: 319: 309: 299: 290:(11): e1000247. 271: 265: 264: 254: 244: 220: 74:Primary citation 29: 22: 540: 539: 535: 534: 533: 531: 530: 529: 495: 494: 493: 492: 435: 426: 421: 377: 376: 372: 328: 327: 323: 273: 272: 268: 222: 221: 214: 210: 48: 17: 12: 11: 5: 538: 536: 528: 527: 522: 517: 512: 507: 497: 496: 491: 490: 483: 476: 468: 465: 464: 447: 433: 432: 425: 424:External links 422: 420: 419: 390:(5): 858–866. 384:Human Mutation 370: 321: 276:Haendel, M. A. 266: 211: 209: 206: 153: 152: 149: 143: 142: 138: 137: 132: 125: 124: 119: 115: 114: 109: 105: 104: 98: 92: 91: 87: 86: 83: 79: 78: 75: 71: 70: 66: 65: 60: 54: 53: 50: 44: 43: 40: 36: 35: 31: 30: 15: 13: 10: 9: 6: 4: 3: 2: 537: 526: 523: 521: 518: 516: 513: 511: 508: 506: 503: 502: 500: 489: 484: 482: 477: 475: 470: 469: 463: 461: 457: 453: 448: 445: 441: 436: 431: 428: 427: 423: 415: 411: 406: 401: 397: 393: 389: 385: 381: 374: 371: 366: 362: 357: 352: 348: 344: 340: 336: 332: 325: 322: 317: 313: 308: 303: 298: 293: 289: 285: 281: 277: 270: 267: 262: 258: 253: 248: 243: 238: 234: 230: 226: 219: 217: 213: 207: 205: 203: 199: 195: 191: 187: 183: 179: 175: 171: 167: 164: 160: 150: 148: 144: 141:Miscellaneous 139: 136: 133: 130: 126: 123: 120: 116: 113: 110: 106: 102: 99: 97: 93: 88: 84: 80: 76: 72: 67: 64: 61: 59: 55: 51: 45: 41: 37: 32: 28: 23: 460:expanding it 449: 434: 387: 383: 373: 341:(18): e119. 338: 334: 324: 287: 284:PLOS Biology 283: 269: 232: 228: 158: 156: 118:Download URL 82:Release date 229:Genome Biol 96:Data format 39:Description 499:Categories 208:References 172:, such as 47:Data types 58:Organisms 414:22331800 365:21737429 316:19956802 261:22293552 186:feathers 166:ontology 131:endpoint 49:captured 405:3327758 356:3185433 307:2774506 252:3334586 194:part-of 178:muscles 170:animals 147:License 108:Website 103:and OBO 69:Contact 63:Metazoa 34:Content 412:  402:  363:  353:  314:  304:  259:  249:  161:is a 129:Sparql 90:Access 20:Uberon 450:This 182:bones 174:lungs 456:stub 410:PMID 361:PMID 312:PMID 257:PMID 190:fins 188:and 157:The 151:open 85:2012 400:PMC 392:doi 351:PMC 343:doi 302:PMC 292:doi 247:PMC 237:doi 101:OWL 501:: 408:. 398:. 388:33 386:. 382:. 359:. 349:. 339:39 337:. 333:. 310:. 300:. 286:. 282:. 255:. 245:. 233:13 231:. 227:. 215:^ 204:. 184:, 180:, 176:, 487:e 480:t 473:v 462:. 416:. 394:: 367:. 345:: 318:. 294:: 288:7 263:. 239::

Index


Organisms
Metazoa
Data format
OWL
http://obophenotype.github.io/uberon/
http://purl.obolibrary.org/obo/uberon/merged.owl
Sparql
http://sparql.hegroup.org/sparql
License
comparative anatomy
ontology
animals
lungs
muscles
bones
feathers
fins
part-of
biological databases
Foundational Model of Anatomy


"Uberon, an integrative multi-species anatomy ontology"
doi
10.1186/gb-2012-13-1-r5
PMC
3334586
PMID
22293552

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